Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008092

Physical Location & Seq

Genomic Coordinates Forward (+)

41302152 .. 41308934

Gene Structure 6783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0243800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2490 bp

ATGCTGGCGAGGGAATCGAGCAGTTCGAACTTCGATCTTCCCGAGGAAGTGCTGCGAGTTCTGCCGCCCGATCCTTTCGAGCAGCTCGATGTGGCCCGCAAGATCACCTCCATTGCCCTCGCGACACGTGTCTCCTCCCTCGAGTCCGAGACCGACGCTCTTCGCGCCCAGCTCGCCGACAAGGACCACCTCGTCGCCGACCTCCAGGCCCAGGTCCAGTCCCTCGACGCCTCTCTCTCCGACACCGCCGACAAGCTCGCCCTCGCTGAGAGGGAAAAGGAGGAGTTGTTGAAGGAGAAGAGCTACCTGTCCAATACTGTGAGGAAGCTCAACAGAGATGTCTCCAAGTTGGAGGTGTTCAGAAAGACGCTTATGCGTTCGCTGCAGGAGGAGGACGAGAGTGGAGCTTCGGAAGTGGTTGCTAAGGCGGAGGAGCAGACCGGAGAGAGCTTATCCTCTCAATCGCAGACTGGACCTGCAGAACATGATGCCACATTCCCACCTTCGAGAACATCTTCAATCCAGAGCCAGAGCCAATTCGCTGAAACAGGAAGCACATATACTGAGGATCGTGACACAAATGCATCGAGGGCTCCACGCATATCACCGGGGCTCCTATTAGCATCCCAAACCAGCACACCGCGGCTTACTCCCCCTGGTTCTCCTCCTATCTATTCGGCATCCACATCCCCAACTAGGACATCAAAGCCGGTGTCCCCAAGGCGGCATTCCATGTCATTTGCTACCTCAAGAGGCATGTTTGATGATAGATCTTCGGTGCCCTCAAGCCATCACGGCTCCATGCCAGGCGCTGAACATGGAAGGACCCGAGTGGATGGGAAAGAATTTTTCCGCCAAGTCAGGAGTCGTTTGTCTTATGAGCAGTTTGGTGCATTTCTGGCAAATGTTAAGGAACTAAATGCCCACAAGCAAACAAAAGAGGAGACTCTGCATAAAGCTGATGAGATATTTGGCCCAGATAATAAGGATCTCAATGGCTCGCGCGACGTCCCCAAAGAAAATCAAGAAGGACAGGCTGCTAGCTCGGCACCAGCTGCTACTACCGTGGCTGCTAGTCCTGCAGGAGGTAGTACAACAAGAAGATCAAGAGCTGGATTCTCCGACACCTTTTCAAACCATGATTTGAGAGCATTGAGATTGGAGGAGACGGTCATAGATGACTGTACTCCTCGAGATGTTCTTGAGGATGACTACTCAAGAAGCTTAGAATCTGAAGCATCAACTCCCAAGGCAAGCACTTCAGACTCGGAAGGAAAAGTCAATAATGGCCCCATTCGTGGTTTCTTCAGAATGTTGAGAAGAGGACAGCAACCCTTCCCTCCTGTGAAGATTCCAGCAAAACCAAAACTCACAAGACGGAAAAGTAAACGAATAAGAGAAGACCTCATTCCACCACTCAACAGTCCCGCTCTGAGGTCTCCTCTGGATCCTGAACTATACGGCTTCAAATCTTCCTGGAAGAATTACTCACTCTCAGAGCTCCAAGCTGCAACCAACAACTTTGGCAATGAGAACTTGATTGGGGAGGGGGGCTATGCTGAAGTTTACAAGGGGACATTGGAAGATGGGCAGATTGTCGCAATTAAACGTCTAACTAGAGGTAACCCAGAAGAAATGACAGCAGACTTCTTATCTGAGCTTGGTGTTATAGTTCATGTTGACCACCCCAACATAGCAAAACTGATTGGGTATGGGGTTGAAGGAGGGATGCACCTTGTTCTTCATTTGTCTCCCCACGGGAGCCTAGCATCTATACTATATGGCCCGAGAGAGATACTAGATTGGGGCATCAGATATAAAGTAGCTTTAGGGACGGCTAAGGGCCTTGTGTATCTTCATGAGGGGTGCCAGAGAAGAATTATCCACAAAGATATTAAGGCTTCTAATATATTGCTCACAGAGGATTTTGAGCCTCAGATATCTGATTTCGGGCTAGCAAAGTGGCTACCAGATCAATGGACTCACCACATTGTATCAAAATTTGAAGGCACATTTGGCTACCTTCCCCCTGAGTTCTTCATGCATGGCATAGTAGATGAAAAAACTGATGTCTATGCATACGGGGTACTATTATTAGAGCTCATCACTGGCCGGCAAGCTTTGGATAGCTCACATAAAAGCCTTGTCATGTGGGCCAAACCTTTACTCATGCAAAATAATATTAAAGAGCTAGCTGATCCAAGCCTTGTTGATGTCTATGATGTGGAACAAATGAAATGTCTTGCCTCGATAGCTTCGATGTGTGTACAGCAGTCTTCAGTGAATCGACCACAAATGAGACAGATTGTCCAGGTCTTACAAGGTGATCAAGAGAGTTTGGATCTTGTAAAAAAACGGCAAAAGTCTAAAAAACTTGAGAGGACATATTCTGAGGAGCTCTTAGATGCAGACGAGTACAACTCCACCAAGTATTTAACTGATCTGGATAAGCGTCTGGAGTTTGTTTTAGGCCCCTGTAATGAAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

829

Amino Acids

91.94

Weight (kDa)

5.83

Isoelectric Point (pI)

51.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At4g15545_C	PF25972	277 - 331	8.1e-29	At4g15545-like, C-terminal domain
Pkinase	PF00069	511 - 771	9.8e-38	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	512 - 773	1.1e-39	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67410 AT1G67410
fragaria_vesca	FvH4_4g23900 FvH4_4g23900 FvH4_4g23900
malus_domestica	MD13G1117800.v1.1 MD16G1118000.v1.1
prunus_persica	Prupe.1G227200_v2.0.a1
pyrus_communis	pycom02g07330 pycom13g10190 pycom16g10110
rosa_chinensis	RchiOBHm_Chr4g0430541
rosa_laevigata	RLG00000006971
rosa_multiflora	Rmu_sc0000131.1_g000025
rosa_roxburghii	Rroxscaffold_5G00372300
rosa_rugosa	Rorug04G0243800 Rorug04G0243900 Rorug04G0243900 Rorug04G0244000
rosa_samantha	Rh4AG300100 Rh4BG307200 Rh4CG323800 Rh4DG304500
rosa_wichuraiana	Rw4G026040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	191
AatII	GACGTC	1 cut(s)	1011
Acc36I	ACCTGC	1 cut(s)	484
AccB1I	GGYRCC	3 cut(s)	778, 1048, 1866
AccBSI	CCGCTC	1 cut(s)	1430
AccII	CGCG	5 cut(s)	122, 165, 643, 1003, 1005
AciI	CCGC	9 cut(s)	65, 97, 246, 428, 641, 643, 724, 853, 1428
AclWI	GGATC	7 cut(s)	65, 576, 996, 1442, 1455, 2192, 2349
AcoI	YGGCCR	1 cut(s)	2110
AcsI	RAATTY	2 cut(s)	845, 2000
AcuI	CTGAAG	5 cut(s)	1245, 1254, 1291, 1581, 2262
AcvI	CACGTG	1 cut(s)	128
AcyI	GRCGYC	2 cut(s)	228, 1008
AfaI	GTAC	5 cut(s)	1093, 1186, 2088, 2268, 2417
AfiI	CCNNNNNNNGG	6 cut(s)	211, 696, 723, 1085, 1298, 1434
AflIII	ACRYGT	2 cut(s)	125, 127
AgsI	TTSAA	6 cut(s)	292, 519, 1134, 1468, 1721, 2006
AhdI	GACNNNNNGTC	1 cut(s)	2306
AjnI	CCWGG	6 cut(s)	204, 210, 655, 805, 1475, 2310
AjuI	GAANNNNNNNTTGG	4 cut(s)	712, 744, 1998, 2030
Alw21I	GWGCWC	3 cut(s)	1503, 2103, 2400
Alw26I	GTCTC	8 cut(s)	136, 143, 346, 938, 1160, 1443, 1755, 2293
AlwI	GGATC	7 cut(s)	65, 576, 996, 1442, 1455, 2192, 2349
AlwNI	CAGNNNCTG	1 cut(s)	812
Ama87I	CYCGRG	5 cut(s)	41, 140, 828, 1191, 1786
AoxI	GGCC	9 cut(s)	93, 207, 973, 1288, 1783, 1843, 2110, 2154, 2470
ApeKI	GCWGC	7 cut(s)	52, 82, 382, 1037, 1055, 1070, 1508
ApoI	RAATTY	2 cut(s)	845, 2000
ArsI	GACNNNNNNTTYG	4 cut(s)	698, 730, 2224, 2256
Asp700I	GAANNNNTTC	1 cut(s)	514
AspLEI	GCGC	3 cut(s)	167, 812, 1005
AsuC2I	CCSGG	1 cut(s)	609
AsuHPI	GGTGA	4 cut(s)	97, 597, 1976, 2336
AsuII	TTCGAA	1 cut(s)	26
AsuNHI	GCTAGC	3 cut(s)	1040, 1954, 2191
AvaI	CYCGRG	5 cut(s)	41, 140, 828, 1191, 1786
AvaII	GGWCC	4 cut(s)	184, 214, 473, 825
BaeGI	GKGCMC	1 cut(s)	783
BamHI	GGATCC	1 cut(s)	1447
BanI	GGYRCC	3 cut(s)	778, 1048, 1866
BanII	GRGCYC	5 cut(s)	595, 615, 1503, 2103, 2400
BarI	GAAGNNNNNNTAC	2 cut(s)	544, 576
BbrPI	CACGTG	1 cut(s)	128
BbsI	GAAGAC	2 cut(s)	1407, 2268
Bbv12I	GWGCWC	3 cut(s)	1503, 2103, 2400
BbvI	GCAGC	7 cut(s)	39, 94, 369, 1024, 1042, 1057, 1495
BccI	CCATC	3 cut(s)	798, 830, 1580
BceAI	ACGGC	4 cut(s)	811, 1477, 1851, 2372
BciT130I	CCWGG	6 cut(s)	206, 212, 657, 807, 1477, 2312
BclI	TGATCA	1 cut(s)	2326
BcnI	CCSGG	1 cut(s)	609
BcoDI	GTCTC	8 cut(s)	136, 143, 346, 938, 1160, 1443, 1755, 2293
BfaI	CTAG	8 cut(s)	696, 1041, 1074, 1617, 1766, 1799, 1955, 2192
BfmI	CTRYAG	3 cut(s)	383, 477, 1080
BfoI	RGCGCY	1 cut(s)	813
BfuAI	ACCTGC	1 cut(s)	484
BglI	GCCNNNNNGGC	1 cut(s)	795
BglII	AGATCT	1 cut(s)	770
Bme1390I	CCNGG	7 cut(s)	206, 212, 609, 657, 807, 1477, 2312
Bme18I	GGWCC	4 cut(s)	184, 214, 473, 825
BmeRI	GACNNNNNGTC	1 cut(s)	2306
BmeT110I	CYCGRG	5 cut(s)	41, 140, 828, 1191, 1786
BmrFI	CCNGG	7 cut(s)	206, 212, 609, 657, 807, 1477, 2312
BmsI	GCATC	9 cut(s)	478, 593, 632, 689, 1247, 1719, 1778, 1818, 2395
BmtI	GCTAGC	3 cut(s)	1044, 1958, 2195
BoxI	GACNNNNGTC	1 cut(s)	128
BpiI	GAAGAC	2 cut(s)	1407, 2268
BplI	GAGNNNNNCTC	6 cut(s)	1389, 1421, 1426, 1458, 2405, 2437
BpmI	CTGGAG	2 cut(s)	188, 2477
Bpu10I	CCTNAGC	2 cut(s)	423, 1839
Bpu14I	TTCGAA	1 cut(s)	26
BpuEI	CTTGAG	5 cut(s)	733, 769, 1201, 1223, 2396
BpuMI	CCSGG	1 cut(s)	609
BsaAI	YACGTR	1 cut(s)	128
BsaHI	GRCGYC	2 cut(s)	228, 1008
BsaI	GGTCTC	2 cut(s)	143, 1443
BsaJI	CCNNGG	9 cut(s)	42, 210, 608, 641, 655, 719, 1065, 1248, 1756
BsaWI	WCCGGW	1 cut(s)	440
BsaXI	ACNNNNNCTCC	4 cut(s)	272, 302, 597, 627
Bsc4I	CCNNNNNNNGG	6 cut(s)	211, 696, 723, 1085, 1298, 1434
Bse118I	RCCGGY	2 cut(s)	709, 2112
Bse1I	ACTGG	3 cut(s)	217, 475, 2113
Bse3DI	GCAATG	2 cut(s)	111, 1534
BseBI	CCWGG	6 cut(s)	206, 212, 657, 807, 1477, 2312
BseDI	CCNNGG	9 cut(s)	42, 210, 608, 641, 655, 719, 1065, 1248, 1756
BseGI	GGATG	6 cut(s)	623, 680, 686, 841, 1213, 1734
BseLI	CCNNNNNNNGG	6 cut(s)	211, 696, 723, 1085, 1298, 1434
BseMI	GCAATG	2 cut(s)	111, 1534
BseMII	CTCAG	8 cut(s)	258, 555, 1424, 1509, 1647, 1949, 2022, 2382
BseNI	ACTGG	3 cut(s)	217, 475, 2113
BseSI	GKGCMC	1 cut(s)	783
BseXI	GCAGC	7 cut(s)	39, 94, 369, 1024, 1042, 1057, 1495
BseYI	CCCAGC	1 cut(s)	168
Bsh1236I	CGCG	5 cut(s)	122, 165, 643, 1003, 1005
BshFI	GGCC	9 cut(s)	95, 209, 975, 1290, 1785, 1845, 2112, 2156, 2472
BshNI	GGYRCC	3 cut(s)	778, 1048, 1866
BsiHKAI	GWGCWC	3 cut(s)	1503, 2103, 2400
BsiHKCI	CYCGRG	5 cut(s)	41, 140, 828, 1191, 1786
BsiSI	CCGG	4 cut(s)	441, 608, 710, 2113
BslFI	GGGAC	6 cut(s)	205, 700, 995, 1410, 1588, 1846
BslI	CCNNNNNNNGG	6 cut(s)	211, 696, 723, 1085, 1298, 1434
BsmAI	GTCTC	8 cut(s)	136, 143, 346, 938, 1160, 1443, 1755, 2293
BsmBI	CGTCTC	1 cut(s)	1160
BsmFI	GGGAC	6 cut(s)	205, 700, 995, 1410, 1588, 1846
BsmI	GAATGC	1 cut(s)	727
BsnI	GGCC	9 cut(s)	95, 209, 975, 1290, 1785, 1845, 2112, 2156, 2472
Bso31I	GGTCTC	2 cut(s)	143, 1443
BsoBI	CYCGRG	5 cut(s)	41, 140, 828, 1191, 1786
Bsp119I	TTCGAA	1 cut(s)	26
Bsp1286I	GDGCHC	6 cut(s)	595, 615, 783, 1503, 2103, 2400
Bsp1407I	TGTACA	1 cut(s)	2266
Bsp68I	TCGCGA	1 cut(s)	122
BspACI	CCGC	9 cut(s)	65, 97, 246, 428, 641, 643, 724, 853, 1428
BspANI	GGCC	9 cut(s)	95, 209, 975, 1290, 1785, 1845, 2112, 2156, 2472
BspCNI	CTCAG	8 cut(s)	259, 556, 1425, 1508, 1648, 1948, 2023, 2383
BspFNI	CGCG	5 cut(s)	122, 165, 643, 1003, 1005
BspHI	TCATGA	1 cut(s)	1858
BspMAI	CTGCAG	3 cut(s)	387, 481, 1084
BspMI	ACCTGC	1 cut(s)	484
BspOI	GCTAGC	3 cut(s)	1044, 1958, 2195
BspPI	GGATC	7 cut(s)	65, 576, 996, 1442, 1455, 2192, 2349
BspQI	GCTCTTC	2 cut(s)	165, 293
BspT104I	TTCGAA	1 cut(s)	26
BspT107I	GGYRCC	3 cut(s)	778, 1048, 1866
BspTNI	GGTCTC	2 cut(s)	143, 1443
BsrBI	CCGCTC	1 cut(s)	1430
BsrDI	GCAATG	2 cut(s)	111, 1534
BsrFI	RCCGGY	2 cut(s)	709, 2112
BsrGI	TGTACA	1 cut(s)	2266
BsrI	ACTGG	3 cut(s)	217, 475, 2113
BssAI	RCCGGY	2 cut(s)	709, 2112
BssECI	CCNNGG	9 cut(s)	42, 210, 608, 641, 655, 719, 1065, 1248, 1756
BssNI	GRCGYC	2 cut(s)	228, 1008
BssT1I	CCWWGG	2 cut(s)	719, 1248
Bst2UI	CCWGG	6 cut(s)	206, 212, 657, 807, 1477, 2312
Bst4CI	ACNGT	5 cut(s)	319, 1066, 1171, 1184, 1424
Bst6I	CTCTTC	3 cut(s)	165, 293, 1315
BstACI	GRCGYC	2 cut(s)	228, 1008
BstAPI	GCANNNNNTGC	1 cut(s)	1055
BstAUI	TGTACA	1 cut(s)	2266
BstBAI	YACGTR	1 cut(s)	128
BstBI	TTCGAA	1 cut(s)	26
BstDSI	CCRYGG	3 cut(s)	641, 1065, 1756
BstEII	GGTNACC	1 cut(s)	1622
BstENI	CCTNNNNNAGG	1 cut(s)	1083
BstF5I	GGATG	6 cut(s)	623, 680, 686, 841, 1213, 1734
BstFNI	CGCG	5 cut(s)	122, 165, 643, 1003, 1005
BstH2I	RGCGCY	1 cut(s)	813
BstHHI	GCGC	3 cut(s)	167, 812, 1005
BstMAI	GTCTC	8 cut(s)	136, 143, 346, 938, 1160, 1443, 1755, 2293
BstNI	CCWGG	6 cut(s)	206, 212, 657, 807, 1477, 2312
BstNSI	RCATGY	1 cut(s)	760
BstPAI	GACNNNNGTC	1 cut(s)	128
BstPI	GGTNACC	1 cut(s)	1622
BstSCI	CCNGG	7 cut(s)	204, 210, 607, 655, 805, 1475, 2310
BstSFI	CTRYAG	3 cut(s)	383, 477, 1080
BstSLI	GKGCMC	1 cut(s)	783
BstUI	CGCG	5 cut(s)	122, 165, 643, 1003, 1005
BstV1I	GCAGC	7 cut(s)	39, 94, 369, 1024, 1042, 1057, 1495
BstV2I	GAAGAC	2 cut(s)	1407, 2268
BstX2I	RGATCY	4 cut(s)	770, 988, 1447, 2341
BstXI	CCANNNNNNTGG	1 cut(s)	1977
BstYI	RGATCY	4 cut(s)	770, 988, 1447, 2341
BsuRI	GGCC	9 cut(s)	95, 209, 975, 1290, 1785, 1845, 2112, 2156, 2472
BtgI	CCRYGG	3 cut(s)	641, 1065, 1756
BtsCI	GGATG	6 cut(s)	623, 680, 686, 841, 1213, 1734
BtsIMutI	CAGTG	2 cut(s)	2106, 2286
BtuMI	TCGCGA	1 cut(s)	122
BveI	ACCTGC	1 cut(s)	484
CaiI	CAGNNNCTG	1 cut(s)	812
CciI	TCATGA	1 cut(s)	1858
CfoI	GCGC	3 cut(s)	167, 812, 1005
Cfr10I	RCCGGY	2 cut(s)	709, 2112
Cfr42I	CCGCGG	1 cut(s)	644
CseI	GACGC	4 cut(s)	164, 236, 376, 2441
Csp6I	GTAC	5 cut(s)	1092, 1185, 2087, 2267, 2416
CviQI	GTAC	5 cut(s)	1092, 1185, 2087, 2267, 2416
DrdI	GACNNNNNNGTC	1 cut(s)	191
DriI	GACNNNNNGTC	1 cut(s)	2306
DseDI	GACNNNNNNGTC	1 cut(s)	191
EaeI	YGGCCR	1 cut(s)	2110
Eam1104I	CTCTTC	3 cut(s)	165, 293, 1315
Eam1105I	GACNNNNNGTC	1 cut(s)	2306
EarI	CTCTTC	3 cut(s)	165, 293, 1315
EciI	GGCGGA	2 cut(s)	443, 842
Ecl136II	GAGCTC	3 cut(s)	1501, 2101, 2398
Eco130I	CCWWGG	2 cut(s)	719, 1248
Eco24I	GRGCYC	5 cut(s)	595, 615, 1503, 2103, 2400
Eco31I	GGTCTC	2 cut(s)	143, 1443
Eco32I	GATATC	1 cut(s)	1941
Eco47I	GGWCC	4 cut(s)	184, 214, 473, 825
Eco53kI	GAGCTC	3 cut(s)	1501, 2101, 2398
Eco57I	CTGAAG	5 cut(s)	1245, 1254, 1291, 1581, 2262
Eco72I	CACGTG	1 cut(s)	128
Eco88I	CYCGRG	5 cut(s)	41, 140, 828, 1191, 1786
Eco91I	GGTNACC	1 cut(s)	1622
EcoICRI	GAGCTC	3 cut(s)	1501, 2101, 2398
EcoNI	CCTNNNNNAGG	1 cut(s)	1083
EcoO109I	RGGNCCY	3 cut(s)	825, 1843, 2471
EcoO65I	GGTNACC	1 cut(s)	1622
EcoRII	CCWGG	6 cut(s)	204, 210, 655, 805, 1475, 2310
EcoRV	GATATC	1 cut(s)	1941
EcoT14I	CCWWGG	2 cut(s)	719, 1248
EcoT22I	ATGCAT	3 cut(s)	586, 2046, 2080
EcoT38I	GRGCYC	5 cut(s)	595, 615, 1503, 2103, 2400
ErhI	CCWWGG	2 cut(s)	719, 1248
Esp3I	CGTCTC	1 cut(s)	1160
FaqI	GGGAC	6 cut(s)	205, 700, 995, 1410, 1588, 1846
FauI	CCCGC	2 cut(s)	104, 1435
FbaI	TGATCA	1 cut(s)	2326
FokI	GGATG	6 cut(s)	610, 667, 673, 848, 1220, 1741
FriOI	GRGCYC	5 cut(s)	595, 615, 1503, 2103, 2400
FspBI	CTAG	8 cut(s)	696, 1041, 1074, 1617, 1766, 1799, 1955, 2192
GlaI	GCGC	3 cut(s)	166, 811, 1004
GsaI	CCCAGC	1 cut(s)	172
GsuI	CTGGAG	2 cut(s)	188, 2477
HaeII	RGCGCY	1 cut(s)	813
HaeIII	GGCC	9 cut(s)	95, 209, 975, 1290, 1785, 1845, 2112, 2156, 2472
HapII	CCGG	4 cut(s)	441, 608, 710, 2113
HgaI	GACGC	4 cut(s)	164, 236, 376, 2441
HhaI	GCGC	3 cut(s)	167, 812, 1005
Hin1I	GRCGYC	2 cut(s)	228, 1008
Hin6I	GCGC	3 cut(s)	165, 810, 1003
HinP1I	GCGC	3 cut(s)	165, 810, 1003
HincII	GTYRAC	1 cut(s)	1681
HindII	GTYRAC	1 cut(s)	1681
HindIII	AAGCTT	2 cut(s)	1222, 2118
HpaII	CCGG	4 cut(s)	441, 608, 710, 2113
HphI	GGTGA	4 cut(s)	97, 597, 1976, 2336
Hpy166II	GTNNAC	4 cut(s)	1388, 1567, 1681, 2267
Hpy8I	GTNNAC	4 cut(s)	1388, 1567, 1681, 2267
Hpy99I	CGWCG	4 cut(s)	158, 197, 230, 1010
HpyAV	CCTTC	9 cut(s)	286, 513, 816, 1022, 1265, 1345, 1715, 2000, 2033
HpyCH4III	ACNGT	5 cut(s)	319, 1066, 1171, 1184, 1424
HpyCH4IV	ACGT	3 cut(s)	127, 1008, 1609
HpySE526I	ACGT	3 cut(s)	127, 1008, 1609
Hsp92I	GRCGYC	2 cut(s)	228, 1008
HspAI	GCGC	3 cut(s)	165, 810, 1003
KroI	GCCGGC	1 cut(s)	2112
KroNI	GCCGGC	1 cut(s)	2114
Ksp22I	TGATCA	1 cut(s)	2326
KspI	CCGCGG	1 cut(s)	644
LguI	GCTCTTC	2 cut(s)	165, 293
LmnI	GCTCC	8 cut(s)	404, 433, 598, 618, 803, 1506, 1761, 2395
Lsp1109I	GCAGC	7 cut(s)	39, 94, 369, 1024, 1042, 1057, 1495
LweI	GCATC	9 cut(s)	478, 593, 632, 689, 1247, 1719, 1778, 1818, 2395
MaeI	CTAG	8 cut(s)	696, 1041, 1074, 1617, 1766, 1799, 1955, 2192
MaeII	ACGT	3 cut(s)	127, 1008, 1609
MaeIII	GTNAC	2 cut(s)	572, 1622
MbiI	CCGCTC	1 cut(s)	1430
MflI	RGATCY	4 cut(s)	770, 988, 1447, 2341
MhlI	GDGCHC	6 cut(s)	595, 615, 783, 1503, 2103, 2400
MluCI	AATT	6 cut(s)	536, 845, 1483, 1602, 1878, 2000
MlyI	GAGTC	5 cut(s)	152, 874, 940, 1259, 1975
MmeI	TCCRAC	3 cut(s)	264, 330, 1146
Mph1103I	ATGCAT	3 cut(s)	586, 2046, 2080
MroNI	GCCGGC	1 cut(s)	2112
MroXI	GAANNNNTTC	1 cut(s)	514
MseI	TTAA	5 cut(s)	909, 1605, 1896, 2184, 2435
MspA1I	CMGCKG	2 cut(s)	643, 1055
MspI	CCGG	4 cut(s)	441, 608, 710, 2113
MspR9I	CCNGG	7 cut(s)	206, 212, 609, 657, 807, 1477, 2312
Mva1269I	GAATGC	1 cut(s)	727
MvaI	CCWGG	6 cut(s)	206, 212, 657, 807, 1477, 2312
MvnI	CGCG	5 cut(s)	122, 165, 643, 1003, 1005
NaeI	GCCGGC	1 cut(s)	2114
NciI	CCSGG	1 cut(s)	609
NgoMIV	GCCGGC	1 cut(s)	2112
NheI	GCTAGC	3 cut(s)	1040, 1954, 2191
NmeAIII	GCCGAG	1 cut(s)	1025
NmuCI	GTSAC	1 cut(s)	572
NruI	TCGCGA	1 cut(s)	122
NsiI	ATGCAT	3 cut(s)	586, 2046, 2080
NspI	RCATGY	1 cut(s)	760
NspV	TTCGAA	1 cut(s)	26
PaeR7I	CTCGAG	2 cut(s)	140, 1191
PagI	TCATGA	1 cut(s)	1858
PciSI	GCTCTTC	2 cut(s)	165, 293
PcsI	WCGNNNNNNNCGW	4 cut(s)	23, 39, 84, 2255
PctI	GAATGC	1 cut(s)	727
PdiI	GCCGGC	1 cut(s)	2114
PdmI	GAANNNNTTC	1 cut(s)	514
PfeI	GAWTC	5 cut(s)	14, 1116, 1229, 1351, 2284
PfoI	TCCNGGA	1 cut(s)	1475
PleI	GAGTC	5 cut(s)	151, 873, 940, 1259, 1975
PmaCI	CACGTG	1 cut(s)	128
PmlI	CACGTG	1 cut(s)	128
PpsI	GAGTC	5 cut(s)	151, 873, 940, 1259, 1975
Ppu21I	YACGTR	1 cut(s)	128
PpuMI	RGGWCCY	1 cut(s)	825
PshAI	GACNNNNGTC	1 cut(s)	128
Psp124BI	GAGCTC	3 cut(s)	1503, 2103, 2400
Psp5II	RGGWCCY	1 cut(s)	825
Psp6I	CCWGG	6 cut(s)	204, 210, 655, 805, 1475, 2310
PspCI	CACGTG	1 cut(s)	128
PspEI	GGTNACC	1 cut(s)	1622
PspFI	CCCAGC	1 cut(s)	168
PspGI	CCWGG	6 cut(s)	204, 210, 655, 805, 1475, 2310
PspPPI	RGGWCCY	1 cut(s)	825
PspXI	VCTCGAGB	1 cut(s)	140
PstI	CTGCAG	3 cut(s)	387, 481, 1084
PstNI	CAGNNNCTG	1 cut(s)	812
PsuI	RGATCY	4 cut(s)	770, 988, 1447, 2341
PvuII	CAGCTG	1 cut(s)	1055
RruI	TCGCGA	1 cut(s)	122
RsaI	GTAC	5 cut(s)	1093, 1186, 2088, 2268, 2417
RsaNI	GTAC	5 cut(s)	1092, 1185, 2087, 2267, 2416
SacI	GAGCTC	3 cut(s)	1503, 2103, 2400
SacII	CCGCGG	1 cut(s)	644
SapI	GCTCTTC	2 cut(s)	165, 293
SaqAI	TTAA	5 cut(s)	909, 1605, 1896, 2184, 2435
SbfI	CCTGCAGG	1 cut(s)	1084
SchI	GAGTC	5 cut(s)	152, 874, 940, 1259, 1975
ScrFI	CCNGG	7 cut(s)	206, 212, 609, 657, 807, 1477, 2312
SdaI	CCTGCAGG	1 cut(s)	1084
SduI	GDGCHC	6 cut(s)	595, 615, 783, 1503, 2103, 2400
SfaNI	GCATC	9 cut(s)	478, 593, 632, 689, 1247, 1719, 1778, 1818, 2395
SfcI	CTRYAG	3 cut(s)	383, 477, 1080
Sfr274I	CTCGAG	2 cut(s)	140, 1191
Sfr303I	CCGCGG	1 cut(s)	644
SfuI	TTCGAA	1 cut(s)	26
SgrBI	CCGCGG	1 cut(s)	644
SinI	GGWCC	4 cut(s)	184, 214, 473, 825
SlaI	CTCGAG	2 cut(s)	140, 1191
SmlI	CTYRAG	7 cut(s)	140, 748, 784, 1191, 1202, 1216, 2375
SmoI	CTYRAG	7 cut(s)	140, 748, 784, 1191, 1202, 1216, 2375
Sse8387I	CCTGCAGG	1 cut(s)	1084
Sse9I	AATT	6 cut(s)	536, 845, 1483, 1602, 1878, 2000
SsiI	CCGC	9 cut(s)	65, 97, 246, 428, 641, 643, 724, 853, 1428
SspI	AATATT	1 cut(s)	2182
SspMI	CTAG	8 cut(s)	696, 1041, 1074, 1617, 1766, 1799, 1955, 2192
SstI	GAGCTC	3 cut(s)	1503, 2103, 2400
StyD4I	CCNGG	7 cut(s)	204, 210, 607, 655, 805, 1475, 2310
StyI	CCWWGG	2 cut(s)	719, 1248
TaaI	ACNGT	5 cut(s)	319, 1066, 1171, 1184, 1424
TaiI	ACGT	3 cut(s)	130, 1011, 1612
TaqII	GACCGA	1 cut(s)	167
TasI	AATT	6 cut(s)	536, 845, 1483, 1602, 1878, 2000
TatI	WGTACW	4 cut(s)	1091, 1184, 2266, 2415
TauI	GCSGC	3 cut(s)	67, 646, 727
TfiI	GAWTC	5 cut(s)	14, 1116, 1229, 1351, 2284
Tru1I	TTAA	5 cut(s)	909, 1605, 1896, 2184, 2435
Tru9I	TTAA	5 cut(s)	909, 1605, 1896, 2184, 2435
TscAI	CASTG	2 cut(s)	2113, 2286
TseFI	GTSAC	1 cut(s)	572
TseI	GCWGC	7 cut(s)	52, 82, 382, 1037, 1055, 1070, 1508
Tsp45I	GTSAC	1 cut(s)	572
TspDTI	ATGAA	6 cut(s)	1664, 1733, 1847, 2029, 2073, 2249
TspGWI	ACGGA	1 cut(s)	1393
TspRI	CASTG	2 cut(s)	2113, 2286
VpaK11BI	GGWCC	4 cut(s)	184, 214, 473, 825
XagI	CCTNNNNNAGG	1 cut(s)	1083
XapI	RAATTY	2 cut(s)	845, 2000
XceI	RCATGY	1 cut(s)	760
XhoI	CTCGAG	2 cut(s)	140, 1191
XmnI	GAANNNNTTC	1 cut(s)	514
XspI	CTAG	8 cut(s)	696, 1041, 1074, 1617, 1766, 1799, 1955, 2192
ZraI	GACGTC	1 cut(s)	1009
Zsp2I	ATGCAT	3 cut(s)	586, 2046, 2080

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.