pycom13g10190

arabinosyltransferase ARAD1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0008092
Physical Location & Seq
Forward (+)
6828432 .. 6831440
3009 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g10190.1

Sequence Viewer

Length: 1332 bp
ATGTCAAACACAGGATCTCACAAAATGTACGGAAAAGCCTCCTTCGCTCTCATTGTCGCCTTCCTCCTCCTCATCACCTACTCAATCTTCATCGGCACCGTCGACGTCCGATCCTACTTCCTCCCGCTCGTCCCCTTATCGCCGCCGCCGGCAGCCGCCCAGTCTCTATGCGCCACCACCTCCCCGCCTCTCAAAGTCTACATGTACGATCTCCCGCGCCGCTTCAACGTCGGAATTATGAACCGCCGGAGCACCGATCAGACTCCGGTGACCGCCCGCACTTGGCCTCCGTGGCCCAAGAATTCCGGGCTCAAGAGGCAGCATAGTGTTGAGTACTGGATGATGGGCTCGCTTTTGTCCGACGGTAATGGCGGTGATGGGAGAGAGGCGGTTAGGGTTTCTGATCCGGAATTGGCCGATGCCTTCTTTGTGCCGTTTTTCTCTTCGTTGAGCTTCAATACTCATGGGCACAACATGACCGACCCGGCTACTCAGATTGATCGCCAATTGCAGGTAGATTTATTGAAAATCTTGGGGGAATCAAAGCACTGGCAAAGATCTGGAGGGAGAGACCATGTTATCCCTATGACACATCCGAATGCTTTCAGATTTCTTCGGCCACAGGTCAATGCATCAATTCAGATTGTTGTAGATTTTGGAAGGTATCCTCATGTCATGTCAAATCTGAGCAAAGATGTGGTCACTCCATATGTGCACGTTGTGGATTCCTTTACAGACGATAACCATCCAGATCCATTTGAGTCCCGCACTACGCTTCTTTTCTTCCAGGGAAGGACATACAGGAAAGATGAAGGCATTGTTCGTGTTAAATTGGCTAAAGTCTTAGCTGGTTACAATGATGTTCACTATGAGCGGAGTGTTGCAACAGGAGATAACATAAAATCGTCTACGAAACGGATGCGTTTATCAAAATTTTGTCTGCATCCGGCTGGAGACACTCCGTCTTCTTGTCGCCTATTTGATGCTATTGTGAGCCACTGTGTTCCCGTCATTGTGAGCGATGAAATTGAGCTCCCGTTTGAGGATGAAATTGACTACACCAAATTCTCACTATTCTTCTCATTCAAAGAGGCTTTGGAACCTGATTACATGGTTAATCAGCTTCGTAATGTTTCAAGGGAGAGATGGATTGAAATGTGGGGGACACTAAAGAATATTTCCCACCATTTTGAATTCCATTACCCCCCAGAGAAAGAGGATGCGGTCAATATGCTATGGAGACAGGTGAAGAACAAGCTCTCTGCCGTCAAACTTTCTGTACATAGAAGCCGGAGGTTGAAAATACCAGACTGGTGGCGGAGGAGAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

444

Amino Acids

50.92

Weight (kDa)

9.32

Isoelectric Point (pI)

51.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 62 - 374 7.4e-73 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 108
Acc36I ACCTGC 1 cut(s) 502
AccB1I GGYRCC 1 cut(s) 95
AccBSI CCGCTC 2 cut(s) 127, 874
AccI GTMKAC 3 cut(s) 102, 198, 908
AccII CGCG 1 cut(s) 217
AccIII TCCGGA 1 cut(s) 406
AclWI GGATC 4 cut(s) 22, 105, 398, 746
AcoI YGGCCR 2 cut(s) 414, 617
AcsI RAATTY 4 cut(s) 301, 932, 1064, 1193
AcyI GRCGYC 1 cut(s) 105
AdeI CACNNNGTG 1 cut(s) 721
AfaI GTAC 4 cut(s) 29, 206, 335, 1281
AfiI CCNNNNNNNGG 3 cut(s) 282, 511, 1042
AflIII ACRYGT 1 cut(s) 201
AgsI TTSAA 8 cut(s) 226, 457, 526, 1087, 1137, 1154, 1193, 1300
AhdI GACNNNNNGTC 1 cut(s) 961
AjnI CCWGG 1 cut(s) 786
AluBI AGCT 5 cut(s) 453, 848, 1033, 1123, 1258
AluI AGCT 5 cut(s) 453, 848, 1033, 1123, 1258
Alw21I GWGCWC 3 cut(s) 254, 717, 1035
Alw26I GTCTC 4 cut(s) 168, 564, 948, 1234
Alw44I GTGCAC 1 cut(s) 713
AlwI GGATC 4 cut(s) 22, 105, 398, 746
Aor13HI TCCGGA 1 cut(s) 406
AoxI GGCC 4 cut(s) 284, 293, 414, 617
ApaLI GTGCAC 1 cut(s) 713
ApeKI GCWGC 2 cut(s) 152, 319
ApoI RAATTY 4 cut(s) 301, 932, 1064, 1193
ArsI GACNNNNNNTTYG 2 cut(s) 684, 716
Asp700I GAANNNNTTC 1 cut(s) 602
AspLEI GCGC 2 cut(s) 173, 219
AspS9I GGNCC 1 cut(s) 294
AsuC2I CCSGG 2 cut(s) 307, 485
AsuHPI GGTGA 4 cut(s) 67, 280, 386, 1258
BaeGI GKGCMC 2 cut(s) 471, 717
BanI GGYRCC 1 cut(s) 95
BanII GRGCYC 3 cut(s) 312, 350, 1035
BbsI GAAGAC 1 cut(s) 957
Bbv12I GWGCWC 3 cut(s) 254, 717, 1035
BbvI GCAGC 2 cut(s) 164, 331
BccI CCATC 4 cut(s) 337, 371, 753, 1140
BceAI ACGGC 2 cut(s) 418, 1250
BcgI CGANNNNNNTGC 2 cut(s) 901, 935
BciT130I CCWGG 1 cut(s) 788
BciVI GTATCC 1 cut(s) 675
BcnI CCSGG 2 cut(s) 307, 485
BcoDI GTCTC 4 cut(s) 168, 564, 948, 1234
BfuAI ACCTGC 1 cut(s) 502
BfuI GTATCC 1 cut(s) 675
BglI GCCNNNNNGGC 1 cut(s) 292
BglII AGATCT 1 cut(s) 557
BisI GCNGC 6 cut(s) 143, 146, 153, 156, 220, 320
BlsI GCNGC 6 cut(s) 144, 147, 154, 157, 221, 321
BmcAI AGTACT 1 cut(s) 335
Bme1390I CCNGG 3 cut(s) 307, 485, 788
BmeRI GACNNNNNGTC 1 cut(s) 961
BmgT120I GGNCC 1 cut(s) 294
BmiI GGNNCC 2 cut(s) 97, 1101
BmrFI CCNGG 3 cut(s) 307, 485, 788
BmrI ACTGGG 1 cut(s) 154
BmsI GCATC 6 cut(s) 409, 641, 909, 952, 973, 1210
BmuI ACTGGG 1 cut(s) 154
BpiI GAAGAC 1 cut(s) 957
BpmI CTGGAG 2 cut(s) 582, 972
BpuEI CTTGAG 1 cut(s) 296
BpuMI CCSGG 2 cut(s) 307, 485
BsaBI GATNNNNATC 1 cut(s) 744
BsaHI GRCGYC 1 cut(s) 105
BsaI GGTCTC 1 cut(s) 564
BsaJI CCNNGG 2 cut(s) 290, 787
BsaWI WCCGGW 2 cut(s) 265, 406
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bsc4I CCNNNNNNNGG 3 cut(s) 282, 511, 1042
Bse118I RCCGGY 1 cut(s) 148
Bse1I ACTGG 4 cut(s) 160, 341, 554, 1316
Bse8I GATNNNNATC 1 cut(s) 744
BseAI TCCGGA 1 cut(s) 406
BseBI CCWGG 1 cut(s) 788
BseDI CCNNGG 2 cut(s) 290, 787
BseGI GGATG 7 cut(s) 345, 592, 745, 924, 943, 1051, 1225
BseJI GATNNNNATC 1 cut(s) 744
BseLI CCNNNNNNNGG 3 cut(s) 282, 511, 1042
BseMII CTCAG 2 cut(s) 506, 677
BseNI ACTGG 4 cut(s) 160, 341, 554, 1316
BseRI GAGGAG 2 cut(s) 56, 59
BseSI GKGCMC 2 cut(s) 471, 717
BseXI GCAGC 2 cut(s) 164, 331
Bsh1236I CGCG 1 cut(s) 217
BshFI GGCC 4 cut(s) 286, 295, 416, 619
BshNI GGYRCC 1 cut(s) 95
BsiHKAI GWGCWC 3 cut(s) 254, 717, 1035
BsiSI CCGG 8 cut(s) 149, 247, 266, 306, 407, 485, 947, 1291
BslFI GGGAC 3 cut(s) 116, 748, 1177
BslI CCNNNNNNNGG 3 cut(s) 282, 511, 1042
BsmAI GTCTC 4 cut(s) 168, 564, 948, 1234
BsmFI GGGAC 3 cut(s) 116, 748, 1177
BsmI GAATGC 1 cut(s) 604
BsnI GGCC 4 cut(s) 286, 295, 416, 619
Bso31I GGTCTC 1 cut(s) 564
Bsp1286I GDGCHC 6 cut(s) 254, 312, 350, 471, 717, 1035
Bsp13I TCCGGA 1 cut(s) 406
Bsp1407I TGTACA 1 cut(s) 1279
Bsp143I GATC 8 cut(s) 14, 110, 208, 256, 403, 499, 557, 751
BspANI GGCC 4 cut(s) 286, 295, 416, 619
BspCNI CTCAG 2 cut(s) 505, 678
BspEI TCCGGA 1 cut(s) 406
BspFNI CGCG 1 cut(s) 217
BspLI GGNNCC 2 cut(s) 97, 1101
BspMI ACCTGC 1 cut(s) 502
BspPI GGATC 4 cut(s) 22, 105, 398, 746
BspT107I GGYRCC 1 cut(s) 95
BspTNI GGTCTC 1 cut(s) 564
BsrBI CCGCTC 2 cut(s) 127, 874
BsrFI RCCGGY 1 cut(s) 148
BsrGI TGTACA 1 cut(s) 1279
BsrI ACTGG 4 cut(s) 160, 341, 554, 1316
BssAI RCCGGY 1 cut(s) 148
BssECI CCNNGG 2 cut(s) 290, 787
BssMI GATC 8 cut(s) 14, 110, 208, 256, 403, 499, 557, 751
BssNI GRCGYC 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 788
Bst4CI ACNGT 3 cut(s) 100, 365, 1001
Bst6I CTCTTC 1 cut(s) 448
BstACI GRCGYC 1 cut(s) 105
BstAUI TGTACA 1 cut(s) 1279
BstC8I GCNNGC 3 cut(s) 150, 277, 350
BstDEI CTNAG 3 cut(s) 492, 686, 844
BstDSI CCRYGG 1 cut(s) 290
BstEII GGTNACC 1 cut(s) 268
BstF5I GGATG 7 cut(s) 345, 592, 745, 924, 943, 1051, 1225
BstFNI CGCG 1 cut(s) 217
BstHHI GCGC 2 cut(s) 173, 219
BstKTI GATC 8 cut(s) 17, 113, 211, 259, 406, 502, 560, 754
BstMAI GTCTC 4 cut(s) 168, 564, 948, 1234
BstMBI GATC 8 cut(s) 14, 110, 208, 256, 403, 499, 557, 751
BstMWI GCNNNNNNNGC 3 cut(s) 44, 292, 316
BstNI CCWGG 1 cut(s) 788
BstNSI RCATGY 1 cut(s) 205
BstPI GGTNACC 1 cut(s) 268
BstSCI CCNGG 3 cut(s) 305, 483, 786
BstSLI GKGCMC 2 cut(s) 471, 717
BstUI CGCG 1 cut(s) 217
BstV1I GCAGC 2 cut(s) 164, 331
BstV2I GAAGAC 1 cut(s) 957
BstX2I RGATCY 3 cut(s) 14, 557, 751
BstXI CCANNNNNNTGG 1 cut(s) 1314
BstYI RGATCY 3 cut(s) 14, 557, 751
BsuI GTATCC 1 cut(s) 675
BsuRI GGCC 4 cut(s) 286, 295, 416, 619
BtgI CCRYGG 1 cut(s) 290
BtgZI GCGATG 1 cut(s) 1035
BtsCI GGATG 7 cut(s) 345, 592, 745, 924, 943, 1051, 1225
BtsIMutI CAGTG 2 cut(s) 547, 997
BveI ACCTGC 1 cut(s) 502
Cac8I GCNNGC 3 cut(s) 150, 277, 350
CfoI GCGC 2 cut(s) 173, 219
Cfr10I RCCGGY 1 cut(s) 148
Cfr13I GGNCC 1 cut(s) 294
Csp6I GTAC 4 cut(s) 28, 205, 334, 1280
CviAII CATG 7 cut(s) 202, 464, 475, 575, 671, 676, 1111
CviQI GTAC 4 cut(s) 28, 205, 334, 1280
DdeI CTNAG 3 cut(s) 492, 686, 844
DpnI GATC 8 cut(s) 16, 112, 210, 258, 405, 501, 559, 753
DpnII GATC 8 cut(s) 14, 110, 208, 256, 403, 499, 557, 751
DraIII CACNNNGTG 1 cut(s) 721
DriI GACNNNNNGTC 1 cut(s) 961
EaeI YGGCCR 2 cut(s) 414, 617
Eam1104I CTCTTC 1 cut(s) 448
Eam1105I GACNNNNNGTC 1 cut(s) 961
EarI CTCTTC 1 cut(s) 448
Ecl136II GAGCTC 1 cut(s) 1033
Eco24I GRGCYC 3 cut(s) 312, 350, 1035
Eco31I GGTCTC 1 cut(s) 564
Eco53kI GAGCTC 1 cut(s) 1033
Eco91I GGTNACC 1 cut(s) 268
EcoICRI GAGCTC 1 cut(s) 1033
EcoO65I GGTNACC 1 cut(s) 268
EcoRI GAATTC 2 cut(s) 301, 1193
EcoRII CCWGG 1 cut(s) 786
EcoT22I ATGCAT 1 cut(s) 634
EcoT38I GRGCYC 3 cut(s) 312, 350, 1035
FaeI CATG 7 cut(s) 205, 467, 478, 578, 674, 679, 1114
FaqI GGGAC 3 cut(s) 116, 748, 1177
FatI CATG 7 cut(s) 201, 463, 474, 574, 670, 675, 1110
FauI CCCGC 5 cut(s) 132, 192, 222, 284, 773
FauNDI CATATG 1 cut(s) 709
FblI GTMKAC 3 cut(s) 102, 198, 908
Fnu4HI GCNGC 6 cut(s) 143, 146, 153, 156, 220, 320
FokI GGATG 7 cut(s) 352, 579, 732, 930, 931, 1058, 1232
FriOI GRGCYC 3 cut(s) 312, 350, 1035
Fsp4HI GCNGC 6 cut(s) 143, 146, 153, 156, 220, 320
GlaI GCGC 2 cut(s) 172, 218
GluI GCNGC 6 cut(s) 143, 146, 153, 156, 220, 320
GsuI CTGGAG 2 cut(s) 582, 972
HaeIII GGCC 4 cut(s) 286, 295, 416, 619
HapII CCGG 8 cut(s) 149, 247, 266, 306, 407, 485, 947, 1291
HhaI GCGC 2 cut(s) 173, 219
Hin1I GRCGYC 1 cut(s) 105
Hin1II CATG 7 cut(s) 205, 467, 478, 578, 674, 679, 1114
Hin6I GCGC 2 cut(s) 171, 217
HinP1I GCGC 2 cut(s) 171, 217
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 4 cut(s) 262, 539, 725, 761
HpaII CCGG 8 cut(s) 149, 247, 266, 306, 407, 485, 947, 1291
HphI GGTGA 4 cut(s) 67, 280, 386, 1258
Hpy166II GTNNAC 5 cut(s) 103, 199, 715, 865, 909
Hpy188III TCNNGA 4 cut(s) 313, 407, 561, 749
Hpy8I GTNNAC 5 cut(s) 103, 199, 715, 865, 909
Hpy99I CGWCG 4 cut(s) 104, 107, 233, 365
HpyAV CCTTC 7 cut(s) 52, 70, 433, 654, 786, 806, 1320
HpyCH4III ACNGT 3 cut(s) 100, 365, 1001
HpyCH4IV ACGT 3 cut(s) 105, 228, 717
HpyCH4V TGCA 5 cut(s) 511, 632, 715, 884, 943
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 292, 316
HpyF3I CTNAG 3 cut(s) 492, 686, 844
HpySE526I ACGT 3 cut(s) 105, 228, 717
Hsp92I GRCGYC 1 cut(s) 105
Hsp92II CATG 7 cut(s) 205, 467, 478, 578, 674, 679, 1114
HspAI GCGC 2 cut(s) 171, 217
Kpn2I TCCGGA 1 cut(s) 406
KroI GCCGGC 1 cut(s) 148
KroNI GCCGGC 1 cut(s) 150
Kzo9I GATC 8 cut(s) 14, 110, 208, 256, 403, 499, 557, 751
LmnI GCTCC 2 cut(s) 249, 1038
Lsp1109I GCAGC 2 cut(s) 164, 331
LweI GCATC 6 cut(s) 409, 641, 909, 952, 973, 1210
MaeII ACGT 3 cut(s) 105, 228, 717
MaeIII GTNAC 3 cut(s) 268, 700, 851
MalI GATC 8 cut(s) 16, 112, 210, 258, 405, 501, 559, 753
MbiI CCGCTC 2 cut(s) 127, 874
MboI GATC 8 cut(s) 14, 110, 208, 256, 403, 499, 557, 751
MboII GAAGA 7 cut(s) 79, 435, 605, 775, 957, 1069, 1261
MfeI CAATTG 1 cut(s) 506
MflI RGATCY 3 cut(s) 14, 557, 751
MhlI GDGCHC 6 cut(s) 254, 312, 350, 471, 717, 1035
MlyI GAGTC 2 cut(s) 256, 770
MmeI TCCRAC 2 cut(s) 211, 384
Mph1103I ATGCAT 1 cut(s) 634
MroI TCCGGA 1 cut(s) 406
MroNI GCCGGC 1 cut(s) 148
MroXI GAANNNNTTC 1 cut(s) 602
MseI TTAA 2 cut(s) 828, 1116
MslI CAYNNNNRTG 1 cut(s) 597
MspI CCGG 8 cut(s) 149, 247, 266, 306, 407, 485, 947, 1291
MspR9I CCNGG 3 cut(s) 307, 485, 788
MunI CAATTG 1 cut(s) 506
Mva1269I GAATGC 1 cut(s) 604
MvaI CCWGG 1 cut(s) 788
MvnI CGCG 1 cut(s) 217
MwoI GCNNNNNNNGC 3 cut(s) 44, 292, 316
NaeI GCCGGC 1 cut(s) 150
NciI CCSGG 2 cut(s) 307, 485
NdeI CATATG 1 cut(s) 709
NdeII GATC 8 cut(s) 14, 110, 208, 256, 403, 499, 557, 751
NgoMIV GCCGGC 1 cut(s) 148
NlaIII CATG 7 cut(s) 205, 467, 478, 578, 674, 679, 1114
NlaIV GGNNCC 2 cut(s) 97, 1101
NmuCI GTSAC 2 cut(s) 268, 700
NsiI ATGCAT 1 cut(s) 634
NspI RCATGY 1 cut(s) 205
PciI ACATGT 1 cut(s) 201
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PctI GAATGC 1 cut(s) 604
PdiI GCCGGC 1 cut(s) 150
PdmI GAANNNNTTC 1 cut(s) 602
PfeI GAWTC 2 cut(s) 539, 725
PkrI GCNGC 6 cut(s) 144, 147, 154, 157, 221, 321
PleI GAGTC 2 cut(s) 256, 769
PpsI GAGTC 2 cut(s) 256, 769
PscI ACATGT 1 cut(s) 201
Psp124BI GAGCTC 1 cut(s) 1035
Psp6I CCWGG 1 cut(s) 786
PspEI GGTNACC 1 cut(s) 268
PspGI CCWGG 1 cut(s) 786
PspN4I GGNNCC 2 cut(s) 97, 1101
PspPI GGNCC 1 cut(s) 294
PsuI RGATCY 3 cut(s) 14, 557, 751
RsaI GTAC 4 cut(s) 29, 206, 335, 1281
RsaNI GTAC 4 cut(s) 28, 205, 334, 1280
RseI CAYNNNNRTG 1 cut(s) 597
SacI GAGCTC 1 cut(s) 1035
SalI GTCGAC 1 cut(s) 101
SaqAI TTAA 2 cut(s) 828, 1116
SatI GCNGC 6 cut(s) 143, 146, 153, 156, 220, 320
Sau3AI GATC 8 cut(s) 14, 110, 208, 256, 403, 499, 557, 751
Sau96I GGNCC 1 cut(s) 294
ScaI AGTACT 1 cut(s) 335
SchI GAGTC 2 cut(s) 256, 770
ScrFI CCNGG 3 cut(s) 307, 485, 788
SduI GDGCHC 6 cut(s) 254, 312, 350, 471, 717, 1035
SfaNI GCATC 6 cut(s) 409, 641, 909, 952, 973, 1210
SfiI GGCCNNNNNGGCC 1 cut(s) 292
SgrDI CGTCGACG 1 cut(s) 101
SmiMI CAYNNNNRTG 1 cut(s) 597
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
SspI AATATT 1 cut(s) 1177
SstI GAGCTC 1 cut(s) 1035
StyD4I CCNGG 3 cut(s) 305, 483, 786
TaaI ACNGT 3 cut(s) 100, 365, 1001
TaiI ACGT 3 cut(s) 108, 231, 720
TaqI TCGA 1 cut(s) 102
TaqII GACCGA 1 cut(s) 494
TatI WGTACW 2 cut(s) 333, 1279
TauI GCSGC 4 cut(s) 145, 148, 158, 222
TfiI GAWTC 2 cut(s) 539, 725
Tru1I TTAA 2 cut(s) 828, 1116
Tru9I TTAA 2 cut(s) 828, 1116
TscAI CASTG 2 cut(s) 554, 1004
TseFI GTSAC 2 cut(s) 268, 700
TseI GCWGC 2 cut(s) 152, 319
Tsp45I GTSAC 2 cut(s) 268, 700
TspDTI ATGAA 5 cut(s) 79, 254, 825, 1038, 1062
TspGWI ACGGA 4 cut(s) 45, 279, 931, 951
TspRI CASTG 2 cut(s) 554, 1004
VneI GTGCAC 1 cut(s) 713
XapI RAATTY 4 cut(s) 301, 932, 1064, 1193
XceI RCATGY 1 cut(s) 205
XmiI GTMKAC 3 cut(s) 102, 198, 908
XmnI GAANNNNTTC 1 cut(s) 602
ZraI GACGTC 1 cut(s) 106
ZrmI AGTACT 1 cut(s) 335
Zsp2I ATGCAT 1 cut(s) 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.