Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008092

Physical Location & Seq

Genomic Coordinates Forward (+)

41312606 .. 41317205

Gene Structure 4600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0243900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGAAGAAGACTAGGGTTTCTTCGCCTCAGCTCTGCTTCCTCTTCTTCCTTCTCTCAACCACCACCTTTGCCACCTTCACCGTCAACCCCTCCAAAGTGAAGCAGATCTCATGGAACCCCAGAGCTTTCGTGTACGAAGGTTTGCTCACCGACTTGGAATGCGATCACTTGATCTCCATTGCGAAATCGGAGCTGAAGAGATCGGCCGTCGCCGATAACTTGTCCGGTCAGAGCAAGCTCAGCGAGGTACGCACCAGCTCCGGCATGTTCATCCCCAAGGCCAAGGATCATATTGTTGCTGGTATAGAGGACAAGCTTGCAACATGGACATTTCTCCCAAAAGAGAATGGAGAAGACATACAAGTATTGAGATATGAGCCTGGGCAGAAATATGAACCACACTATGATTACTTTGCTGACAAGGTCAATATTGCGCGGGGTGGACATCGTATAGCAACTGTACTTATGTATCTTACTGATGTGGCCAAAGGTGGTGAAACAGTGTTTCCTCTAGCAGAGGAAATTCACCGCCGAAAGGCTGCAGAACCAGATGCGAGTCTCTCTGACTGTGCAAAGAAAGGAATTGCAGTGAAACCACGAAGAGGAGATGCCCTTCTTTTCTTCAGTCTCCACCCAAACGCAGTTCCAGACGAAAACAGTCTCCATGCGGGGTGCCCAGTGATTGAAGGTGAGAAATGGTCAGCGACAAAGTGGATTCATGTTGACTCATTTGACAAGATCTTGGATACCGGTGGGAACTGCACAGATCTAAATGAGAGTTGTGACAGATGGGCTGCCCTTGGGGAATGCACCAAGAACCGAGAGTATATGGTTGGATCTGCTGGCCTTCCTGGCTACTGTAGGAGGAGTTGTAAGGTGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

294

Amino Acids

32.64

Weight (kDa)

7.55

Isoelectric Point (pI)

50.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	118 - 240	1.5e-08	2OG-Fe(II) oxygenase superfamily
2OG-FeII_Oxy_3	PF13640	120 - 240	5.9e-19	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67410 AT1G67410
fragaria_vesca	FvH4_4g23900 FvH4_4g23900 FvH4_4g23900
malus_domestica	MD13G1117800.v1.1 MD16G1118000.v1.1
prunus_persica	Prupe.1G227200_v2.0.a1
pyrus_communis	pycom02g07330 pycom13g10190 pycom16g10110
rosa_chinensis	RchiOBHm_Chr4g0430541
rosa_laevigata	RLG00000006971
rosa_multiflora	Rmu_sc0000131.1_g000025
rosa_roxburghii	Rroxscaffold_5G00372300
rosa_rugosa	Rorug04G0243800 Rorug04G0243900 Rorug04G0243900 Rorug04G0244000
rosa_samantha	Rh4AG300100 Rh4BG307200 Rh4CG323800 Rh4DG304500
rosa_wichuraiana	Rw4G026040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	672
AccII	CGCG	1 cut(s)	436
AciI	CCGC	3 cut(s)	436, 529, 668
AclWI	GGATC	2 cut(s)	294, 844
AcoI	YGGCCR	2 cut(s)	204, 483
AcsI	RAATTY	1 cut(s)	522
AcuI	CTGAAG	2 cut(s)	215, 607
AfaI	GTAC	3 cut(s)	134, 249, 462
AfiI	CCNNNNNNNGG	2 cut(s)	535, 602
AgeI	ACCGGT	1 cut(s)	749
AgsI	TTSAA	1 cut(s)	686
AjnI	CCWGG	2 cut(s)	379, 850
AluBI	AGCT	6 cut(s)	31, 125, 193, 238, 258, 316
AluI	AGCT	6 cut(s)	31, 125, 193, 238, 258, 316
Alw26I	GTCTC	3 cut(s)	563, 632, 665
AlwI	GGATC	2 cut(s)	294, 844
AoxI	GGCC	4 cut(s)	204, 279, 483, 844
ApeKI	GCWGC	2 cut(s)	539, 794
ApoI	RAATTY	1 cut(s)	522
AsiGI	ACCGGT	1 cut(s)	749
AspLEI	GCGC	1 cut(s)	436
AsuHPI	GGTGA	5 cut(s)	70, 139, 506, 518, 701
BaeGI	GKGCMC	1 cut(s)	677
BaeI	ACNNNNGTAYC	2 cut(s)	452, 485
BalI	TGGCCA	1 cut(s)	485
BanI	GGYRCC	1 cut(s)	672
BbsI	GAAGAC	2 cut(s)	14, 360
BbvCI	CCTCAGC	1 cut(s)	27
BbvI	GCAGC	2 cut(s)	526, 781
BccI	CCATC	1 cut(s)	783
BceAI	ACGGC	1 cut(s)	191
BciT130I	CCWGG	2 cut(s)	381, 852
BciVI	GTATCC	1 cut(s)	739
BcoDI	GTCTC	3 cut(s)	563, 632, 665
BfaI	CTAG	2 cut(s)	12, 512
BfmI	CTRYAG	2 cut(s)	540, 859
BfuI	GTATCC	1 cut(s)	739
BglI	GCCNNNNNGGC	1 cut(s)	852
BglII	AGATCT	3 cut(s)	105, 738, 766
BisI	GCNGC	2 cut(s)	540, 795
BlpI	GCTNAGC	1 cut(s)	239
BlsI	GCNGC	2 cut(s)	541, 796
Bme1390I	CCNGG	2 cut(s)	381, 852
BmiI	GGNNCC	2 cut(s)	116, 674
BmrFI	CCNGG	2 cut(s)	381, 852
BmrI	ACTGGG	1 cut(s)	671
BmsI	GCATC	2 cut(s)	541, 598
BmuI	ACTGGG	1 cut(s)	671
BpiI	GAAGAC	2 cut(s)	14, 360
Bpu10I	CCTNAGC	1 cut(s)	27
Bpu1102I	GCTNAGC	1 cut(s)	239
BsaJI	CCNNGG	4 cut(s)	276, 282, 380, 799
BsaWI	WCCGGW	2 cut(s)	224, 749
BsaXI	ACNNNNNCTCC	3 cut(s)	158, 188, 856
Bsc4I	CCNNNNNNNGG	2 cut(s)	535, 602
Bse118I	RCCGGY	1 cut(s)	749
Bse1I	ACTGG	1 cut(s)	677
Bse3DI	GCAATG	1 cut(s)	177
BseBI	CCWGG	2 cut(s)	381, 852
BseDI	CCNNGG	4 cut(s)	276, 282, 380, 799
BseGI	GGATG	1 cut(s)	270
BseLI	CCNNNNNNNGG	2 cut(s)	535, 602
BseMI	GCAATG	1 cut(s)	177
BseMII	CTCAG	2 cut(s)	41, 253
BseNI	ACTGG	1 cut(s)	677
BseRI	GAGGAG	2 cut(s)	618, 880
BseSI	GKGCMC	1 cut(s)	677
BseX3I	CGGCCG	1 cut(s)	204
BseXI	GCAGC	2 cut(s)	526, 781
BsgI	GTGCAG	1 cut(s)	745
Bsh1236I	CGCG	1 cut(s)	436
Bsh1285I	CGRYCG	1 cut(s)	207
BshFI	GGCC	4 cut(s)	206, 281, 485, 846
BshNI	GGYRCC	1 cut(s)	672
BshTI	ACCGGT	1 cut(s)	749
BsiEI	CGRYCG	1 cut(s)	207
BsiSI	CCGG	3 cut(s)	225, 261, 750
BslI	CCNNNNNNNGG	2 cut(s)	535, 602
BsmAI	GTCTC	3 cut(s)	563, 632, 665
BsmI	GAATGC	2 cut(s)	164, 812
BsnI	GGCC	4 cut(s)	206, 281, 485, 846
Bsp1286I	GDGCHC	1 cut(s)	677
Bsp143I	GATC	8 cut(s)	105, 163, 171, 200, 286, 738, 766, 836
Bsp1720I	GCTNAGC	1 cut(s)	239
BspACI	CCGC	3 cut(s)	436, 529, 668
BspANI	GGCC	4 cut(s)	206, 281, 485, 846
BspCNI	CTCAG	2 cut(s)	40, 252
BspFNI	CGCG	1 cut(s)	436
BspLI	GGNNCC	2 cut(s)	116, 674
BspMAI	CTGCAG	1 cut(s)	544
BspPI	GGATC	2 cut(s)	294, 844
BspT107I	GGYRCC	1 cut(s)	672
BsrDI	GCAATG	1 cut(s)	177
BsrFI	RCCGGY	1 cut(s)	749
BsrI	ACTGG	1 cut(s)	677
BssAI	RCCGGY	1 cut(s)	749
BssECI	CCNNGG	4 cut(s)	276, 282, 380, 799
BssMI	GATC	8 cut(s)	105, 163, 171, 200, 286, 738, 766, 836
BssT1I	CCWWGG	3 cut(s)	276, 282, 799
Bst2UI	CCWGG	2 cut(s)	381, 852
Bst4CI	ACNGT	6 cut(s)	82, 460, 502, 569, 659, 860
Bst6I	CTCTTC	3 cut(s)	47, 191, 595
BstC8I	GCNNGC	3 cut(s)	236, 318, 844
BstDEI	CTNAG	2 cut(s)	27, 239
BstF5I	GGATG	1 cut(s)	270
BstFNI	CGCG	1 cut(s)	436
BstHHI	GCGC	1 cut(s)	436
BstKTI	GATC	8 cut(s)	108, 166, 174, 203, 289, 741, 769, 839
BstMAI	GTCTC	3 cut(s)	563, 632, 665
BstMBI	GATC	8 cut(s)	105, 163, 171, 200, 286, 738, 766, 836
BstMCI	CGRYCG	1 cut(s)	207
BstMWI	GCNNNNNNNGC	3 cut(s)	240, 249, 852
BstNI	CCWGG	2 cut(s)	381, 852
BstNSI	RCATGY	1 cut(s)	268
BstSCI	CCNGG	2 cut(s)	379, 850
BstSFI	CTRYAG	2 cut(s)	540, 859
BstSLI	GKGCMC	1 cut(s)	677
BstUI	CGCG	1 cut(s)	436
BstV1I	GCAGC	2 cut(s)	526, 781
BstV2I	GAAGAC	2 cut(s)	14, 360
BstX2I	RGATCY	4 cut(s)	105, 738, 766, 836
BstYI	RGATCY	4 cut(s)	105, 738, 766, 836
BstZI	CGGCCG	1 cut(s)	204
BsuI	GTATCC	1 cut(s)	739
BsuRI	GGCC	4 cut(s)	206, 281, 485, 846
BtsCI	GGATG	1 cut(s)	270
BtsI	GCAGTG	1 cut(s)	594
BtsIMutI	CAGTG	3 cut(s)	507, 594, 684
Cac8I	GCNNGC	3 cut(s)	236, 318, 844
CfoI	GCGC	1 cut(s)	436
Cfr10I	RCCGGY	1 cut(s)	749
Csp6I	GTAC	3 cut(s)	133, 248, 461
CspAI	ACCGGT	1 cut(s)	749
CspCI	CAANNNNNGTGG	2 cut(s)	49, 84
CviAII	CATG	5 cut(s)	111, 265, 324, 665, 719
CviQI	GTAC	3 cut(s)	133, 248, 461
DdeI	CTNAG	2 cut(s)	27, 239
DpnI	GATC	8 cut(s)	107, 165, 173, 202, 288, 740, 768, 838
DpnII	GATC	8 cut(s)	105, 163, 171, 200, 286, 738, 766, 836
EaeI	YGGCCR	2 cut(s)	204, 483
EagI	CGGCCG	1 cut(s)	204
Eam1104I	CTCTTC	3 cut(s)	47, 191, 595
EarI	CTCTTC	3 cut(s)	47, 191, 595
EclXI	CGGCCG	1 cut(s)	204
Eco130I	CCWWGG	3 cut(s)	276, 282, 799
Eco52I	CGGCCG	1 cut(s)	204
Eco57I	CTGAAG	2 cut(s)	215, 607
EcoRII	CCWGG	2 cut(s)	379, 850
EcoT14I	CCWWGG	3 cut(s)	276, 282, 799
ErhI	CCWWGG	3 cut(s)	276, 282, 799
FaeI	CATG	5 cut(s)	114, 268, 327, 668, 722
FatI	CATG	5 cut(s)	110, 264, 323, 664, 718
FauI	CCCGC	2 cut(s)	429, 661
Fnu4HI	GCNGC	2 cut(s)	540, 795
FokI	GGATG	1 cut(s)	257
Fsp4HI	GCNGC	2 cut(s)	540, 795
FspBI	CTAG	2 cut(s)	12, 512
GlaI	GCGC	1 cut(s)	435
GluI	GCNGC	2 cut(s)	540, 795
HaeIII	GGCC	4 cut(s)	206, 281, 485, 846
HapII	CCGG	3 cut(s)	225, 261, 750
HhaI	GCGC	1 cut(s)	436
Hin1II	CATG	5 cut(s)	114, 268, 327, 668, 722
Hin6I	GCGC	1 cut(s)	434
HinP1I	GCGC	1 cut(s)	434
HincII	GTYRAC	2 cut(s)	85, 724
HindII	GTYRAC	2 cut(s)	85, 724
HindIII	AAGCTT	1 cut(s)	314
HinfI	GANTC	3 cut(s)	556, 715, 725
HpaII	CCGG	3 cut(s)	225, 261, 750
HphI	GGTGA	5 cut(s)	70, 139, 506, 518, 701
Hpy166II	GTNNAC	4 cut(s)	85, 133, 443, 724
Hpy188I	TCNGA	3 cut(s)	190, 231, 565
Hpy188III	TCNNGA	1 cut(s)	647
Hpy8I	GTNNAC	4 cut(s)	85, 133, 443, 724
Hpy99I	CGWCG	1 cut(s)	212
HpyAV	CCTTC	6 cut(s)	59, 85, 131, 623, 680, 857
HpyCH4III	ACNGT	6 cut(s)	82, 460, 502, 569, 659, 860
HpyCH4V	TGCA	6 cut(s)	320, 542, 572, 587, 762, 810
HpyF10VI	GCNNNNNNNGC	3 cut(s)	240, 249, 852
HpyF3I	CTNAG	2 cut(s)	27, 239
Hsp92II	CATG	5 cut(s)	114, 268, 327, 668, 722
HspAI	GCGC	1 cut(s)	434
Kzo9I	GATC	8 cut(s)	105, 163, 171, 200, 286, 738, 766, 836
LmnI	GCTCC	2 cut(s)	190, 263
Lsp1109I	GCAGC	2 cut(s)	526, 781
LweI	GCATC	2 cut(s)	541, 598
MaeI	CTAG	2 cut(s)	12, 512
MaeIII	GTNAC	1 cut(s)	782
MalI	GATC	8 cut(s)	107, 165, 173, 202, 288, 740, 768, 838
MboI	GATC	8 cut(s)	105, 163, 171, 200, 286, 738, 766, 836
MboII	GAAGA	9 cut(s)	12, 16, 19, 34, 37, 208, 365, 612, 613
MflI	RGATCY	4 cut(s)	105, 738, 766, 836
MhlI	GDGCHC	1 cut(s)	677
MlsI	TGGCCA	1 cut(s)	485
MluCI	AATT	2 cut(s)	522, 582
MluNI	TGGCCA	1 cut(s)	485
MlyI	GAGTC	2 cut(s)	565, 719
MmeI	TCCRAC	1 cut(s)	814
MnlI	CCTC	9 cut(s)	36, 50, 100, 238, 301, 511, 519, 596, 858
Mox20I	TGGCCA	1 cut(s)	485
MscI	TGGCCA	1 cut(s)	485
Msp20I	TGGCCA	1 cut(s)	485
MspI	CCGG	3 cut(s)	225, 261, 750
MspR9I	CCNGG	2 cut(s)	381, 852
Mva1269I	GAATGC	2 cut(s)	164, 812
MvaI	CCWGG	2 cut(s)	381, 852
MvnI	CGCG	1 cut(s)	436
MwoI	GCNNNNNNNGC	3 cut(s)	240, 249, 852
NdeII	GATC	8 cut(s)	105, 163, 171, 200, 286, 738, 766, 836
NlaIII	CATG	5 cut(s)	114, 268, 327, 668, 722
NlaIV	GGNNCC	2 cut(s)	116, 674
NmuCI	GTSAC	1 cut(s)	782
NspI	RCATGY	1 cut(s)	268
PctI	GAATGC	2 cut(s)	164, 812
PfeI	GAWTC	1 cut(s)	715
PflFI	GACNNNGTC	1 cut(s)	422
PinAI	ACCGGT	1 cut(s)	749
PkrI	GCNGC	2 cut(s)	541, 796
PleI	GAGTC	2 cut(s)	564, 719
PpsI	GAGTC	2 cut(s)	564, 719
Psp6I	CCWGG	2 cut(s)	379, 850
PspGI	CCWGG	2 cut(s)	379, 850
PspN4I	GGNNCC	2 cut(s)	116, 674
PstI	CTGCAG	1 cut(s)	544
PsuI	RGATCY	4 cut(s)	105, 738, 766, 836
PsyI	GACNNNGTC	1 cut(s)	422
RsaI	GTAC	3 cut(s)	134, 249, 462
RsaNI	GTAC	3 cut(s)	133, 248, 461
SatI	GCNGC	2 cut(s)	540, 795
Sau3AI	GATC	8 cut(s)	105, 163, 171, 200, 286, 738, 766, 836
SchI	GAGTC	2 cut(s)	565, 719
ScrFI	CCNGG	2 cut(s)	381, 852
SduI	GDGCHC	1 cut(s)	677
SfaNI	GCATC	2 cut(s)	541, 598
SfcI	CTRYAG	2 cut(s)	540, 859
Sse9I	AATT	2 cut(s)	522, 582
SsiI	CCGC	3 cut(s)	436, 529, 668
SspI	AATATT	1 cut(s)	430
SspMI	CTAG	2 cut(s)	12, 512
StyD4I	CCNGG	2 cut(s)	379, 850
StyI	CCWWGG	3 cut(s)	276, 282, 799
TaaI	ACNGT	6 cut(s)	82, 460, 502, 569, 659, 860
TasI	AATT	2 cut(s)	522, 582
TatI	WGTACW	1 cut(s)	460
TfiI	GAWTC	1 cut(s)	715
TscAI	CASTG	3 cut(s)	507, 594, 684
TseFI	GTSAC	1 cut(s)	782
TseI	GCWGC	2 cut(s)	539, 794
Tsp45I	GTSAC	1 cut(s)	782
TspDTI	ATGAA	4 cut(s)	17, 259, 408, 707
TspRI	CASTG	3 cut(s)	507, 594, 684
Tth111I	GACNNNGTC	1 cut(s)	422
XapI	RAATTY	1 cut(s)	522
XceI	RCATGY	1 cut(s)	268
XspI	CTAG	2 cut(s)	12, 512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.