AT1G67790

Sieve element occlusion N-terminus

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
25417542 .. 25420099
2558 bp
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UTR
Exon/CDS
Intron
AT1G67790.1

Sequence Viewer

Length: 1995 bp
ATGAATTTCCGACGCGACATCTCTGCTCTGAATGAAGACATCATAGTTGAGCAGCTACTTCGTAGCCATGATCCAGACGGTCGCTGGCTTGATTCCGAAATGCTGCTTCAAGAAGTCGAAACCATCTTAAGCTTTGTTCTGCAAAATGATGTTTCTAGACCGCTTCTGACAGAGAATTGTATCACCACCATTGAAGTTTTTGACTCAAAGGAAACACTACCATACGCTATCTTCAGAATCTCCGTTCAGATGCTTTGTCCATGTACTGGGGAAAATGAGATCCGGAAAAGGACAATGGTTTTGTTTGATCTTCTCAAGGAATACAGATGGGATGCAAAAGCTGTGTTAGTACTAGGAGTCCTTGCCGCAACATATGGAGGACTATTGCTACCAGTTCATCTGGCCATCTGTGATCCCGTTGCAGCATCAATTGCAAAACTCAACCAGTTGCCTATTGAGAGAACCAAGTTCAGACCGTGGTTAGAGTCTCTAAACTTGCTCATTAAAGCCATGGTGGATGTAACCAAATGCATCATCAAATTTGAAAAAATTCCATTTAAACAAGCGAAGCTAGACAACAACATTTTGGGAGAAACCTTGTCTAACATCTATCTGACTACTTATCGGGTTGTCAAAAGTGCACTCACATGCATGCAGCAGATCCCTTATTTCAAGCAAACGCAGCAGGCAAAAAAATCAAGGAAAACAGCAGCGGAACTTTCAATTGAATCAAGGAGAGCAGCAGGAGAACTGTCTAGTTTGGGATATCAGTTGCTGAACATACACACCCGCCTCAACAAGCAGGTAGAAGATTGCAGCACACAAATAGAGGAAGAAATCAATCAAAGGCTTAGAAACATTAACATAGAGACTCATCAAGACAACCAAGACGTACTCCACCTACTTTTTTCTCTACAAGATGATTTGCCACTTCAACAATACTCCAGACAGATATCTATAACTGAGGTACAAGATAAGGTAACACTACTGCTATTATCAAAGCCACCAGTAGAGCCACTTTTCTTCCTACTCCAACAGCTATACGATCATCCATCTAACACCAACACAGAACAAAACTACGAGATCATATGGGTTCCAATACCATCATCCCAAAAATGGACAGACGAAGAGAAAGAAATCTTCGATTTCTACTCCAATTCCTTACCATGGATCTCAGTAAGGCAACCATGGTTGATGAGCTCCACAATACTCAACTTTTTCAAACAAGAATGGCATTATAAAGATAACGAAGCAATGTTGGTTGTTATCGATTCTAACGGGAGGTTCGTCAACATGAATGCCATGGATATGGTGTTGATTTGGGGTGTTAAAGCATATCCATTCTCAGTTTCTAGAGAAGATGAGCTTTGGAAAGAACATGGATGGTCTATCAATCTCTTGCTTGATGGAATTCATCCTACATTTGAAGGAAGAGAGATCTGCATATTCGGAAGCGAGAATTTGGATTGGATTGACGAATTTGTGTCACTAGCGAGAAAAATTCAAAACCTAGGGTTCCAGTTAGAGCTGATTTACCTAAGCAACCAGAGACGAGACGAGCGAGCCATGGAAGAGAGCTCAATTTTGTTCAGTCCTACATTGCAACAGCTCTTCTGGCTCCGATTAGAAAGCATCGAAAGATCAAAACTCAAGCGGATTGTAATTGAACCATCGAAACCTGATCGTGTTTTTGAAGAAGTTAGGAACCTTCTCGACTTCGATTACGGGAAACATAGAGGTTGGGGAATCATTGGGAATGGATCAACTGCGGAGACGGTTGATGGAGAGAAGATGACGGAGAGGATGAGAAAGATTGTGCGGTGGGGAGAGTATGCGAAGGGGTTGGGTTTTACGGAGGCGATTGAGATTGCGGCGGAGAAGCCGTGTGAACTGAGTCACACGGCGGTTGTTCCGTTTGAAGAAGCGTTGACGATGAAAGTTGTCACGTGCGAGAAATGTAAGTGGCCAATGAAGAGGTTTGTTGCATATCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

664

Amino Acids

77.12

Weight (kDa)

5.4

Isoelectric Point (pI)

54.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SEO_N PF14576 11 - 289 5.8e-70 Sieve element occlusion N-terminus
SEO_C PF14577 451 - 664 1.6e-51 Sieve element occlusion C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1239
Acc36I ACCTGC 1 cut(s) 793
AccB7I CCANNNNNTGG 1 cut(s) 266
AccII CGCG 1 cut(s) 15
AccIII TCCGGA 1 cut(s) 282
AclWI GGATC 6 cut(s) 65, 274, 407, 655, 1178, 1768
AcoI YGGCCR 2 cut(s) 402, 1964
AcsI RAATTY 7 cut(s) 4, 539, 549, 1410, 1459, 1478, 1500
AcuI CTGAAG 1 cut(s) 217
AcvI CACGTG 1 cut(s) 1947
AfaI GTAC 4 cut(s) 265, 351, 894, 969
AfiI CCNNNNNNNGG 3 cut(s) 266, 1116, 1167
AflII CTTAAG 1 cut(s) 127
Alw21I GWGCWC 3 cut(s) 643, 1202, 1580
Alw26I GTCTC 5 cut(s) 492, 863, 1543, 1548, 1766
Alw44I GTGCAC 1 cut(s) 639
AlwI GGATC 6 cut(s) 65, 274, 407, 655, 1178, 1768
AlwNI CAGNNNCTG 1 cut(s) 775
Aor13HI TCCGGA 1 cut(s) 282
AoxI GGCC 2 cut(s) 402, 1964
ApaLI GTGCAC 1 cut(s) 639
ApeKI GCWGC 8 cut(s) 52, 103, 422, 655, 682, 710, 740, 816
ApoI RAATTY 7 cut(s) 4, 539, 549, 1410, 1459, 1478, 1500
ArsI GACNNNNNNTTYG 2 cut(s) 283, 315
Asp700I GAANNNNTTC 1 cut(s) 549
AspA2I CCTAGG 1 cut(s) 1510
AsuHPI GGTGA 1 cut(s) 175
AvrII CCTAGG 1 cut(s) 1510
BaeGI GKGCMC 1 cut(s) 643
BalI TGGCCA 2 cut(s) 404, 1966
BanII GRGCYC 2 cut(s) 1202, 1580
BbrPI CACGTG 1 cut(s) 1947
BbsI GAAGAC 1 cut(s) 42
Bbv12I GWGCWC 3 cut(s) 643, 1202, 1580
BbvI GCAGC 8 cut(s) 64, 90, 434, 667, 694, 722, 752, 828
BccI CCATC 9 cut(s) 131, 321, 413, 1060, 1111, 1377, 1400, 1678, 1775
BceAI ACGGC 2 cut(s) 1867, 1917
BcgI CGANNNNNNTGC 4 cut(s) 5, 39, 41, 75
BcoDI GTCTC 5 cut(s) 492, 863, 1543, 1548, 1766
BfaI CTAG 7 cut(s) 156, 353, 572, 756, 1353, 1490, 1511
BfrI CTTAAG 1 cut(s) 127
BfuAI ACCTGC 1 cut(s) 793
BglII AGATCT 1 cut(s) 1437
BlnI CCTAGG 1 cut(s) 1510
BmcAI AGTACT 1 cut(s) 351
BmiI GGNNCC 4 cut(s) 1095, 1517, 1619, 1706
BmrI ACTGGG 1 cut(s) 276
BmsI GCATC 5 cut(s) 240, 322, 434, 540, 1641
BmuI ACTGGG 1 cut(s) 276
BpiI GAAGAC 1 cut(s) 42
BpmI CTGGAG 1 cut(s) 928
Bpu10I CCTNAGC 1 cut(s) 1538
BpuEI CTTGAG 2 cut(s) 299, 1634
Bsa29I ATCGAT 1 cut(s) 1269
BsaAI YACGTR 1 cut(s) 1947
BsaJI CCNNGG 7 cut(s) 476, 510, 1166, 1187, 1302, 1510, 1566
BsaWI WCCGGW 1 cut(s) 282
BsaXI ACNNNNNCTCC 2 cut(s) 1868, 1898
Bsc4I CCNNNNNNNGG 3 cut(s) 266, 1116, 1167
Bse1I ACTGG 5 cut(s) 271, 392, 445, 1007, 1519
Bse3DI GCAATG 2 cut(s) 1260, 1598
BseAI TCCGGA 1 cut(s) 282
BseCI ATCGAT 1 cut(s) 1269
BseDI CCNNGG 7 cut(s) 476, 510, 1166, 1187, 1302, 1510, 1566
BseGI GGATG 7 cut(s) 337, 523, 1048, 1106, 1388, 1414, 1809
BseLI CCNNNNNNNGG 3 cut(s) 266, 1116, 1167
BseMI GCAATG 2 cut(s) 1260, 1598
BseMII CTCAG 4 cut(s) 954, 1188, 1359, 1883
BseNI ACTGG 5 cut(s) 271, 392, 445, 1007, 1519
BseSI GKGCMC 1 cut(s) 643
BseXI GCAGC 8 cut(s) 64, 90, 434, 667, 694, 722, 752, 828
Bsh1236I CGCG 1 cut(s) 15
Bsh1285I CGRYCG 1 cut(s) 82
BshFI GGCC 2 cut(s) 404, 1966
BshVI ATCGAT 1 cut(s) 1269
BsiEI CGRYCG 1 cut(s) 82
BsiHKAI GWGCWC 3 cut(s) 643, 1202, 1580
BsiSI CCGG 1 cut(s) 283
BslI CCNNNNNNNGG 3 cut(s) 266, 1116, 1167
BsmAI GTCTC 5 cut(s) 492, 863, 1543, 1548, 1766
BsmBI CGTCTC 3 cut(s) 1543, 1548, 1766
BsmI GAATGC 1 cut(s) 1303
BsnI GGCC 2 cut(s) 404, 1966
Bsp1286I GDGCHC 3 cut(s) 643, 1202, 1580
Bsp13I TCCGGA 1 cut(s) 282
Bsp19I CCATGG 5 cut(s) 510, 1166, 1187, 1302, 1566
BspANI GGCC 2 cut(s) 404, 1966
BspCNI CTCAG 4 cut(s) 955, 1187, 1358, 1884
BspDI ATCGAT 1 cut(s) 1269
BspEI TCCGGA 1 cut(s) 282
BspFNI CGCG 1 cut(s) 15
BspLI GGNNCC 4 cut(s) 1095, 1517, 1619, 1706
BspMI ACCTGC 1 cut(s) 793
BspPI GGATC 6 cut(s) 65, 274, 407, 655, 1178, 1768
BspQI GCTCTTC 1 cut(s) 1616
BspTI CTTAAG 1 cut(s) 127
BsrDI GCAATG 2 cut(s) 1260, 1598
BsrI ACTGG 5 cut(s) 271, 392, 445, 1007, 1519
BssECI CCNNGG 7 cut(s) 476, 510, 1166, 1187, 1302, 1510, 1566
BssT1I CCWWGG 6 cut(s) 510, 1166, 1187, 1302, 1510, 1566
Bst4CI ACNGT 4 cut(s) 80, 477, 753, 1777
Bst6I CTCTTC 5 cut(s) 1122, 1426, 1566, 1616, 1967
BstAFI CTTAAG 1 cut(s) 127
BstAPI GCANNNNNTGC 1 cut(s) 431
BstBAI YACGTR 1 cut(s) 1947
BstC8I GCNNGC 4 cut(s) 86, 653, 687, 1563
BstDEI CTNAG 6 cut(s) 851, 963, 1174, 1345, 1538, 1892
BstDSI CCRYGG 6 cut(s) 476, 510, 1166, 1187, 1302, 1566
BstF5I GGATG 7 cut(s) 337, 523, 1048, 1106, 1388, 1414, 1809
BstFNI CGCG 1 cut(s) 15
BstMAI GTCTC 5 cut(s) 492, 863, 1543, 1548, 1766
BstMCI CGRYCG 1 cut(s) 82
BstMWI GCNNNNNNNGC 3 cut(s) 431, 682, 1615
BstNSI RCATGY 2 cut(s) 651, 655
BstSLI GKGCMC 1 cut(s) 643
BstUI CGCG 1 cut(s) 15
BstV1I GCAGC 8 cut(s) 64, 90, 434, 667, 694, 722, 752, 828
BstV2I GAAGAC 1 cut(s) 42
BstX2I RGATCY 4 cut(s) 279, 660, 1170, 1437
BstXI CCANNNNNNTGG 1 cut(s) 1309
BstYI RGATCY 4 cut(s) 279, 660, 1170, 1437
Bsu15I ATCGAT 1 cut(s) 1269
BsuRI GGCC 2 cut(s) 404, 1966
BsuTUI ATCGAT 1 cut(s) 1269
BtgI CCRYGG 6 cut(s) 476, 510, 1166, 1187, 1302, 1566
BtsCI GGATG 7 cut(s) 337, 523, 1048, 1106, 1388, 1414, 1809
BveI ACCTGC 1 cut(s) 793
Cac8I GCNNGC 4 cut(s) 86, 653, 687, 1563
CaiI CAGNNNCTG 1 cut(s) 775
ClaI ATCGAT 1 cut(s) 1269
CseI GACGC 1 cut(s) 21
Csp6I GTAC 4 cut(s) 264, 350, 893, 968
CviQI GTAC 4 cut(s) 264, 350, 893, 968
DdeI CTNAG 6 cut(s) 851, 963, 1174, 1345, 1538, 1892
DraI TTTAAA 1 cut(s) 559
EaeI YGGCCR 2 cut(s) 402, 1964
Eam1104I CTCTTC 5 cut(s) 1122, 1426, 1566, 1616, 1967
EarI CTCTTC 5 cut(s) 1122, 1426, 1566, 1616, 1967
EciI GGCGGA 1 cut(s) 1889
Ecl136II GAGCTC 2 cut(s) 1200, 1578
Eco130I CCWWGG 6 cut(s) 510, 1166, 1187, 1302, 1510, 1566
Eco24I GRGCYC 2 cut(s) 1202, 1580
Eco32I GATATC 2 cut(s) 767, 954
Eco53kI GAGCTC 2 cut(s) 1200, 1578
Eco57I CTGAAG 1 cut(s) 217
Eco72I CACGTG 1 cut(s) 1947
EcoICRI GAGCTC 2 cut(s) 1200, 1578
EcoRI GAATTC 1 cut(s) 1410
EcoRV GATATC 2 cut(s) 767, 954
EcoT14I CCWWGG 6 cut(s) 510, 1166, 1187, 1302, 1510, 1566
EcoT22I ATGCAT 2 cut(s) 533, 653
EcoT38I GRGCYC 2 cut(s) 1202, 1580
ErhI CCWWGG 6 cut(s) 510, 1166, 1187, 1302, 1510, 1566
Esp3I CGTCTC 3 cut(s) 1543, 1548, 1766
FalI AAGNNNNNCTT 2 cut(s) 1350, 1382
FauI CCCGC 1 cut(s) 797
FauNDI CATATG 2 cut(s) 373, 1088
FokI GGATG 7 cut(s) 344, 530, 1035, 1093, 1395, 1401, 1816
FriOI GRGCYC 2 cut(s) 1202, 1580
FspBI CTAG 7 cut(s) 156, 353, 572, 756, 1353, 1490, 1511
GsuI CTGGAG 1 cut(s) 928
HaeIII GGCC 2 cut(s) 404, 1966
HapII CCGG 1 cut(s) 283
HgaI GACGC 1 cut(s) 21
HincII GTYRAC 2 cut(s) 1291, 1929
HindII GTYRAC 2 cut(s) 1291, 1929
HindIII AAGCTT 1 cut(s) 130
HpaII CCGG 1 cut(s) 283
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 4 cut(s) 641, 1291, 1889, 1929
Hpy188III TCNNGA 8 cut(s) 74, 110, 156, 283, 878, 945, 1353, 1712
Hpy8I GTNNAC 4 cut(s) 641, 1291, 1889, 1929
Hpy99I CGWCG 1 cut(s) 15
HpyAV CCTTC 3 cut(s) 1421, 1718, 1831
HpyCH4III ACNGT 4 cut(s) 80, 477, 753, 1777
HpyCH4IV ACGT 2 cut(s) 891, 1946
HpyF10VI GCNNNNNNNGC 3 cut(s) 431, 682, 1615
HpyF3I CTNAG 6 cut(s) 851, 963, 1174, 1345, 1538, 1892
HpySE526I ACGT 2 cut(s) 891, 1946
Kpn2I TCCGGA 1 cut(s) 282
LguI GCTCTTC 1 cut(s) 1616
LmnI GCTCC 2 cut(s) 1205, 1623
Lsp1109I GCAGC 8 cut(s) 64, 90, 434, 667, 694, 722, 752, 828
LweI GCATC 5 cut(s) 240, 322, 434, 540, 1641
MaeI CTAG 7 cut(s) 156, 353, 572, 756, 1353, 1490, 1511
MaeII ACGT 2 cut(s) 891, 1946
MaeIII GTNAC 5 cut(s) 520, 979, 1485, 1895, 1942
MfeI CAATTG 2 cut(s) 429, 723
MflI RGATCY 4 cut(s) 279, 660, 1170, 1437
MhlI GDGCHC 3 cut(s) 643, 1202, 1580
MlsI TGGCCA 2 cut(s) 404, 1966
MluNI TGGCCA 2 cut(s) 404, 1966
MlyI GAGTC 5 cut(s) 197, 366, 494, 865, 1903
MmeI TCCRAC 2 cut(s) 34, 1057
MnlI CCTC 9 cut(s) 371, 803, 823, 958, 1275, 1730, 1794, 1849, 1968
Mox20I TGGCCA 2 cut(s) 404, 1966
Mph1103I ATGCAT 2 cut(s) 533, 653
MroI TCCGGA 1 cut(s) 282
MroXI GAANNNNTTC 1 cut(s) 549
MscI TGGCCA 2 cut(s) 404, 1966
MseI TTAA 5 cut(s) 128, 504, 558, 861, 1329
MslI CAYNNNNRTG 3 cut(s) 646, 650, 1307
Msp20I TGGCCA 2 cut(s) 404, 1966
MspA1I CMGCKG 1 cut(s) 713
MspCI CTTAAG 1 cut(s) 127
MspI CCGG 1 cut(s) 283
MunI CAATTG 2 cut(s) 429, 723
Mva1269I GAATGC 1 cut(s) 1303
MvnI CGCG 1 cut(s) 15
MwoI GCNNNNNNNGC 3 cut(s) 431, 682, 1615
NcoI CCATGG 5 cut(s) 510, 1166, 1187, 1302, 1566
NdeI CATATG 2 cut(s) 373, 1088
NlaIV GGNNCC 4 cut(s) 1095, 1517, 1619, 1706
NmuCI GTSAC 3 cut(s) 1485, 1895, 1942
NsiI ATGCAT 2 cut(s) 533, 653
NspI RCATGY 2 cut(s) 651, 655
PaeI GCATGC 1 cut(s) 655
PciSI GCTCTTC 1 cut(s) 1616
PcsI WCGNNNNNNNCGW 2 cut(s) 1284, 1558
PctI GAATGC 1 cut(s) 1303
PdmI GAANNNNTTC 1 cut(s) 549
PfeI GAWTC 5 cut(s) 92, 237, 728, 1271, 1746
PflMI CCANNNNNTGG 1 cut(s) 266
PleI GAGTC 5 cut(s) 197, 365, 493, 865, 1902
PmaCI CACGTG 1 cut(s) 1947
PmlI CACGTG 1 cut(s) 1947
PpsI GAGTC 5 cut(s) 197, 365, 493, 865, 1902
Ppu21I YACGTR 1 cut(s) 1947
PsiI TTATAA 1 cut(s) 1239
Psp124BI GAGCTC 2 cut(s) 1202, 1580
PspCI CACGTG 1 cut(s) 1947
PspN4I GGNNCC 4 cut(s) 1095, 1517, 1619, 1706
PstNI CAGNNNCTG 1 cut(s) 775
PsuI RGATCY 4 cut(s) 279, 660, 1170, 1437
RsaI GTAC 4 cut(s) 265, 351, 894, 969
RsaNI GTAC 4 cut(s) 264, 350, 893, 968
RseI CAYNNNNRTG 3 cut(s) 646, 650, 1307
SacI GAGCTC 2 cut(s) 1202, 1580
SapI GCTCTTC 1 cut(s) 1616
SaqAI TTAA 5 cut(s) 128, 504, 558, 861, 1329
ScaI AGTACT 1 cut(s) 351
SchI GAGTC 5 cut(s) 197, 366, 494, 865, 1903
SduI GDGCHC 3 cut(s) 643, 1202, 1580
SfaNI GCATC 5 cut(s) 240, 322, 434, 540, 1641
SmiMI CAYNNNNRTG 3 cut(s) 646, 650, 1307
SmlI CTYRAG 3 cut(s) 127, 314, 1649
SmoI CTYRAG 3 cut(s) 127, 314, 1649
SphI GCATGC 1 cut(s) 655
SspMI CTAG 7 cut(s) 156, 353, 572, 756, 1353, 1490, 1511
SstI GAGCTC 2 cut(s) 1202, 1580
StyI CCWWGG 6 cut(s) 510, 1166, 1187, 1302, 1510, 1566
TaaI ACNGT 4 cut(s) 80, 477, 753, 1777
TaiI ACGT 2 cut(s) 894, 1949
TaqI TCGA 7 cut(s) 117, 1143, 1269, 1635, 1673, 1713, 1719
TatI WGTACW 2 cut(s) 263, 349
TauI GCSGC 2 cut(s) 368, 1874
TfiI GAWTC 5 cut(s) 92, 237, 728, 1271, 1746
Tru1I TTAA 5 cut(s) 128, 504, 558, 861, 1329
Tru9I TTAA 5 cut(s) 128, 504, 558, 861, 1329
TseFI GTSAC 3 cut(s) 1485, 1895, 1942
TseI GCWGC 8 cut(s) 52, 103, 422, 655, 682, 710, 740, 816
Tsp45I GTSAC 3 cut(s) 1485, 1895, 1942
TspDTI ATGAA 7 cut(s) 17, 48, 386, 1310, 1403, 1949, 1985
TspGWI ACGGA 4 cut(s) 232, 1811, 1868, 1902
Van91I CCANNNNNTGG 1 cut(s) 266
Vha464I CTTAAG 1 cut(s) 127
VneI GTGCAC 1 cut(s) 639
XapI RAATTY 7 cut(s) 4, 539, 549, 1410, 1459, 1478, 1500
XbaI TCTAGA 2 cut(s) 155, 1352
XceI RCATGY 2 cut(s) 651, 655
XcmI CCANNNNNNNNNTGG 1 cut(s) 81
XmaJI CCTAGG 1 cut(s) 1510
XmnI GAANNNNTTC 1 cut(s) 549
XspI CTAG 7 cut(s) 156, 353, 572, 756, 1353, 1490, 1511
ZrmI AGTACT 1 cut(s) 351
Zsp2I ATGCAT 2 cut(s) 533, 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.