Rmu_sc0004612.1_g000008

Sieve element occlusion C-terminus

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004612.1
Physical Location & Seq
Forward (+)
30046 .. 33035
2990 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004612.1_g000008.1.cds

Sequence Viewer

Length: 2040 bp
atgcttggaagtgatcccttcttgccgcaatccatatcatctttagcagaagaagtcctgattaagaagctactgctcagccatgatcccgatggtcgtcattttgattctgaactatttctttgtgcagtggagaacatcatgctttgtactacagcagaagaagttcctgatgatgtaaatttagaaaaaatggaagtggttggattagaagaaccgctcggaaagaccttcggtaagatttcacatgagatactttgcaagtggcctgatcaagaagatccacacacaaggacaatgctattatttgatttgcttggaagttataagtgggatgcaaaagtggtattagtacttgcatcttttgtagcaagttacggtgaattgaggctcctaatgcagctatgctctagtaaccccttggcattatcagtcacaatgcttaagcagttgcctgctgacatgagtcctttgaaacctcgatttaaggccttgagcttgttagtgaatgcaatggtggatgtaacgaagtatatcatcaagtttgaaaagctaccgctttcacatgtggagttggattatgaggcaaagaatgctaccaagtctatcatctatatagctgtctactggatcattagaggcatcttgagatgcgcttcgcaaatcacagactcaacacttctgaaatctgagcaatattcaaattcaacaataattgcaacatgggaggtcttaagtttggtgtatcagctgcgcagcatttacagtcgcctcagacagcaggtggaaatctgtcatcagcaaacagagacaaagctatattggaagctgatgaatgtcttccaggaaactcaagtggacaaccaagaggtccttcgattcttattcgctatgagggatgacttgccactcaaggattgcttctcacaagcaaagcttggtgtatctgatctgaagggcaagatagtcatactcttgttttcaaggccagagttcctttcgatagacgaaacattattgttggttcagcaaacacataatcatcctcactacaaaaacctagagggaagttacaggatcgtatggatccccattccagtttccagtcaatggaccactgctgatgcgacaatgtttgatttcttatcaagtatttttccttggtactcggtaaggaaaccctggcttcttcactcagcagtggtggcatttattaaagaagcatggaactacaaaaaggagccggtcgtggttgtgttggattcacaagggaatgtcacaaacaaaaatgtacttgacatgttacttatctggggtgtcattgcatacccattttcagcttcaagagaaaacgaactttggcaagagcagaactggaccttgcaatttatggttgatgccattgacccctgtttgaccaagtgggtagaagaagatagaaatatttgcatctatggaagcaataacatagattggatcctagaattcactggtaagatggagattataaaaagtgcaggagtaaaacttgagatggtgtatgttggcaagaggaactcaagtcaacaaacgaggaacattttaaccagggttgatcataaacaattaagcagtgtattgtcttttataaaatctcaattgttctggcttaggctgcaaagtataagaagatcaaaactccgactaggaaagccggaaactactgaccatgttctagatgaggtgtcagcactgctagatatggatggcaacaacacgaactgggcagtaatagggagaggatctaattccatggatatggtaagacttaaagggccagagcttatggaatgccttgacatgtttcccaaatggggtggaagtgttgcagagttggggttcttgagtgcacttagaaattcccttgaaccatcttttcgttctggaccttgtggtcatgactatgatgtcactctctctagtgaagaactagcactccaaggaatggtagtttgtggcaagtgtaagcaccccatgaagaagttcgttatctataaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

679

Amino Acids

77.65

Weight (kDa)

6.03

Isoelectric Point (pI)

38.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 327, 1508, 1628
AarI CACCTGC 1 cut(s) 772
AasI GACNNNNNNGTC 2 cut(s) 1932, 1946
Acc16I TGCGCA 1 cut(s) 755
Acc36I ACCTGC 1 cut(s) 772
AccB7I CCANNNNNTGG 2 cut(s) 1110, 1984
AccBSI CCGCTC 1 cut(s) 220
AccI GTMKAC 1 cut(s) 624
AciI CCGC 3 cut(s) 26, 218, 557
AcsI RAATTY 4 cut(s) 181, 703, 1484, 1897
AcuI CTGAAG 1 cut(s) 974
AfaI GTAC 4 cut(s) 151, 354, 1166, 1293
AfiI CCNNNNNNNGG 3 cut(s) 1110, 1853, 1984
AflII CTTAAG 2 cut(s) 443, 733
AflIII ACRYGT 3 cut(s) 565, 1299, 1839
AgsI TTSAA 7 cut(s) 475, 548, 702, 708, 984, 1344, 1907
AjnI CCWGG 3 cut(s) 843, 1181, 1586
AjuI GAANNNNNNNTTGG 2 cut(s) 858, 890
AloI GAACNNNNNNTCC 2 cut(s) 1959, 1991
Alw21I GWGCWC 1 cut(s) 1891
Alw26I GTCTC 1 cut(s) 803
Alw44I GTGCAC 1 cut(s) 1887
AoxI GGCC 4 cut(s) 266, 489, 986, 1814
ApaLI GTGCAC 1 cut(s) 1887
ApeKI GCWGC 4 cut(s) 400, 751, 756, 1654
ApoI RAATTY 4 cut(s) 181, 703, 1484, 1897
Asp700I GAANNNNTTC 4 cut(s) 117, 165, 839, 2021
AspLEI GCGC 2 cut(s) 656, 756
AspS9I GGNCC 5 cut(s) 871, 1113, 1377, 1814, 1925
AsuHPI GGTGA 1 cut(s) 392
AvaII GGWCC 4 cut(s) 871, 1113, 1377, 1925
BaeGI GKGCMC 1 cut(s) 1891
BamHI GGATCC 2 cut(s) 1086, 1476
BbsI GAAGAC 1 cut(s) 832
Bbv12I GWGCWC 1 cut(s) 1891
BbvI GCAGC 4 cut(s) 412, 738, 768, 1641
BccI CCATC 5 cut(s) 86, 1492, 1528, 1739, 1918
BciT130I CCWGG 3 cut(s) 845, 1183, 1588
BclI TGATCA 2 cut(s) 271, 1594
BcoDI GTCTC 1 cut(s) 803
BfaI CTAG 8 cut(s) 411, 1061, 1481, 1685, 1715, 1736, 1959, 1970
BfmI CTRYAG 1 cut(s) 153
BfrI CTTAAG 2 cut(s) 443, 733
BfuAI ACCTGC 1 cut(s) 772
BisI GCNGC 5 cut(s) 26, 401, 752, 757, 1655
BlpI GCTNAGC 1 cut(s) 77
BlsI GCNGC 5 cut(s) 27, 402, 753, 758, 1656
BmcAI AGTACT 1 cut(s) 354
Bme1390I CCNGG 3 cut(s) 845, 1183, 1588
Bme18I GGWCC 4 cut(s) 871, 1113, 1377, 1925
BmgT120I GGNCC 5 cut(s) 871, 1113, 1377, 1814, 1925
BmiI GGNNCC 4 cut(s) 392, 1088, 1242, 1478
BmrFI CCNGG 3 cut(s) 845, 1183, 1588
BmrI ACTGGG 1 cut(s) 1771
BmsI GCATC 7 cut(s) 325, 368, 641, 651, 1114, 1387, 1458
BmuI ACTGGG 1 cut(s) 1771
BoxI GACNNNNGTC 1 cut(s) 465
BpiI GAAGAC 1 cut(s) 832
Bpu10I CCTNAGC 1 cut(s) 1649
Bpu1102I GCTNAGC 1 cut(s) 77
BpuEI CTTGAG 7 cut(s) 514, 667, 837, 896, 1543, 1550, 1903
BsaJI CCNNGG 6 cut(s) 420, 1160, 1181, 1587, 1791, 1978
BsaXI ACNNNNNCTCC 2 cut(s) 1959, 1989
Bsc4I CCNNNNNNNGG 3 cut(s) 1110, 1853, 1984
Bse118I RCCGGY 1 cut(s) 1243
Bse1I ACTGG 6 cut(s) 632, 1097, 1104, 1379, 1495, 1766
Bse3DI GCAATG 2 cut(s) 519, 1320
BseBI CCWGG 3 cut(s) 845, 1183, 1588
BseDI CCNNGG 6 cut(s) 420, 1160, 1181, 1587, 1791, 1978
BseGI GGATG 5 cut(s) 340, 526, 904, 1042, 1750
BseLI CCNNNNNNNGG 3 cut(s) 1110, 1853, 1984
BseMI GCAATG 2 cut(s) 519, 1320
BseMII CTCAG 4 cut(s) 91, 681, 787, 1209
BseNI ACTGG 6 cut(s) 632, 1097, 1104, 1379, 1495, 1766
BseSI GKGCMC 1 cut(s) 1891
BseXI GCAGC 4 cut(s) 412, 738, 768, 1641
BsgI GTGCAG 2 cut(s) 147, 1536
Bsh1285I CGRYCG 1 cut(s) 1248
BshFI GGCC 4 cut(s) 268, 491, 988, 1816
BsiEI CGRYCG 1 cut(s) 1248
BsiHKAI GWGCWC 1 cut(s) 1891
BsiSI CCGG 2 cut(s) 1244, 1694
BslI CCNNNNNNNGG 3 cut(s) 1110, 1853, 1984
BsmAI GTCTC 1 cut(s) 803
BsmI GAATGC 3 cut(s) 514, 598, 1835
BsnI GGCC 4 cut(s) 268, 491, 988, 1816
Bsp1286I GDGCHC 1 cut(s) 1891
Bsp1720I GCTNAGC 1 cut(s) 77
Bsp19I CCATGG 1 cut(s) 1791
BspACI CCGC 3 cut(s) 26, 218, 557
BspANI GGCC 4 cut(s) 268, 491, 988, 1816
BspCNI CTCAG 4 cut(s) 90, 682, 786, 1208
BspHI TCATGA 1 cut(s) 1936
BspLI GGNNCC 4 cut(s) 392, 1088, 1242, 1478
BspMI ACCTGC 1 cut(s) 772
BspTI CTTAAG 2 cut(s) 443, 733
BsrBI CCGCTC 1 cut(s) 220
BsrDI GCAATG 2 cut(s) 519, 1320
BsrFI RCCGGY 1 cut(s) 1243
BsrI ACTGG 6 cut(s) 632, 1097, 1104, 1379, 1495, 1766
BssAI RCCGGY 1 cut(s) 1243
BssECI CCNNGG 6 cut(s) 420, 1160, 1181, 1587, 1791, 1978
BssT1I CCWWGG 4 cut(s) 420, 1160, 1791, 1978
Bst2UI CCWGG 3 cut(s) 845, 1183, 1588
Bst4CI ACNGT 2 cut(s) 380, 767
BstAFI CTTAAG 2 cut(s) 443, 733
BstAPI GCANNNNNTGC 1 cut(s) 593
BstC8I GCNNGC 1 cut(s) 456
BstDEI CTNAG 6 cut(s) 77, 690, 773, 1195, 1649, 1892
BstDSI CCRYGG 1 cut(s) 1791
BstF5I GGATG 5 cut(s) 340, 526, 904, 1042, 1750
BstHHI GCGC 2 cut(s) 656, 756
BstMAI GTCTC 1 cut(s) 803
BstMCI CGRYCG 1 cut(s) 1248
BstMWI GCNNNNNNNGC 4 cut(s) 397, 593, 1205, 1654
BstNI CCWGG 3 cut(s) 845, 1183, 1588
BstNSI RCATGY 3 cut(s) 569, 1303, 1843
BstPAI GACNNNNGTC 1 cut(s) 465
BstSCI CCNGG 3 cut(s) 843, 1181, 1586
BstSFI CTRYAG 1 cut(s) 153
BstSLI GKGCMC 1 cut(s) 1891
BstV1I GCAGC 4 cut(s) 412, 738, 768, 1641
BstV2I GAAGAC 1 cut(s) 832
BstX2I RGATCY 4 cut(s) 280, 1086, 1476, 1781
BstXI CCANNNNNNTGG 1 cut(s) 1798
BstYI RGATCY 4 cut(s) 280, 1086, 1476, 1781
BsuRI GGCC 4 cut(s) 268, 491, 988, 1816
BtgI CCRYGG 1 cut(s) 1791
BtsCI GGATG 5 cut(s) 340, 526, 904, 1042, 1750
BtsI GCAGTG 5 cut(s) 135, 1116, 1206, 1618, 1730
BtsIMutI CAGTG 6 cut(s) 135, 1116, 1206, 1488, 1618, 1730
BveI ACCTGC 1 cut(s) 772
Cac8I GCNNGC 1 cut(s) 456
CciI TCATGA 1 cut(s) 1936
CfoI GCGC 2 cut(s) 656, 756
Cfr10I RCCGGY 1 cut(s) 1243
Cfr13I GGNCC 5 cut(s) 871, 1113, 1377, 1814, 1925
Csp6I GTAC 4 cut(s) 150, 353, 1165, 1292
CspCI CAANNNNNGTGG 2 cut(s) 1837, 1872
CviQI GTAC 4 cut(s) 150, 353, 1165, 1292
DdeI CTNAG 6 cut(s) 77, 690, 773, 1195, 1649, 1892
DrdI GACNNNNNNGTC 2 cut(s) 1932, 1946
DseDI GACNNNNNNGTC 2 cut(s) 1932, 1946
Eco130I CCWWGG 4 cut(s) 420, 1160, 1791, 1978
Eco147I AGGCCT 1 cut(s) 491
Eco47I GGWCC 4 cut(s) 871, 1113, 1377, 1925
Eco57I CTGAAG 1 cut(s) 974
EcoO109I RGGNCCY 1 cut(s) 871
EcoRI GAATTC 1 cut(s) 1484
EcoRII CCWGG 3 cut(s) 843, 1181, 1586
EcoT14I CCWWGG 4 cut(s) 420, 1160, 1791, 1978
ErhI CCWWGG 4 cut(s) 420, 1160, 1791, 1978
FalI AAGNNNNNCTT 6 cut(s) 858, 890, 905, 937, 921, 953
FbaI TGATCA 2 cut(s) 271, 1594
FblI GTMKAC 1 cut(s) 624
Fnu4HI GCNGC 5 cut(s) 26, 401, 752, 757, 1655
FokI GGATG 5 cut(s) 347, 533, 911, 1029, 1757
Fsp4HI GCNGC 5 cut(s) 26, 401, 752, 757, 1655
FspBI CTAG 8 cut(s) 411, 1061, 1481, 1685, 1715, 1736, 1959, 1970
FspI TGCGCA 1 cut(s) 755
GlaI GCGC 2 cut(s) 655, 755
GluI GCNGC 5 cut(s) 26, 401, 752, 757, 1655
HaeIII GGCC 4 cut(s) 268, 491, 988, 1816
HapII CCGG 2 cut(s) 1244, 1694
HhaI GCGC 2 cut(s) 656, 756
Hin6I GCGC 2 cut(s) 654, 754
HinP1I GCGC 2 cut(s) 654, 754
HincII GTYRAC 1 cut(s) 1565
HindII GTYRAC 1 cut(s) 1565
HindIII AAGCTT 1 cut(s) 935
HinfI GANTC 5 cut(s) 107, 466, 671, 879, 1262
HpaII CCGG 2 cut(s) 1244, 1694
HphI GGTGA 1 cut(s) 392
Hpy166II GTNNAC 4 cut(s) 625, 859, 1565, 1889
Hpy188I TCNGA 8 cut(s) 112, 224, 684, 691, 776, 949, 954, 1682
Hpy8I GTNNAC 4 cut(s) 625, 859, 1565, 1889
HpyAV CCTTC 4 cut(s) 28, 241, 884, 949
HpyCH4III ACNGT 2 cut(s) 380, 767
HpyF10VI GCNNNNNNNGC 4 cut(s) 397, 593, 1205, 1654
HpyF3I CTNAG 6 cut(s) 77, 690, 773, 1195, 1649, 1892
HspAI GCGC 2 cut(s) 654, 754
Ksp22I TGATCA 2 cut(s) 271, 1594
LmnI GCTCC 2 cut(s) 396, 1240
Lsp1109I GCAGC 4 cut(s) 412, 738, 768, 1641
LweI GCATC 7 cut(s) 325, 368, 641, 651, 1114, 1387, 1458
MaeI CTAG 8 cut(s) 411, 1061, 1481, 1685, 1715, 1736, 1959, 1970
MaeIII GTNAC 8 cut(s) 374, 413, 433, 523, 1070, 1276, 1302, 1948
MbiI CCGCTC 1 cut(s) 220
MfeI CAATTG 1 cut(s) 1637
MflI RGATCY 4 cut(s) 280, 1086, 1476, 1781
MhlI GDGCHC 1 cut(s) 1891
MlyI GAGTC 2 cut(s) 475, 665
MmeI TCCRAC 4 cut(s) 184, 555, 1239, 1705
MroXI GAANNNNTTC 4 cut(s) 117, 165, 839, 2021
MseI TTAA 8 cut(s) 63, 444, 486, 734, 1215, 1583, 1607, 1809
MslI CAYNNNNRTG 2 cut(s) 1796, 1941
MspA1I CMGCKG 1 cut(s) 751
MspCI CTTAAG 2 cut(s) 443, 733
MspI CCGG 2 cut(s) 1244, 1694
MspR9I CCNGG 3 cut(s) 845, 1183, 1588
MunI CAATTG 1 cut(s) 1637
Mva1269I GAATGC 3 cut(s) 514, 598, 1835
MvaI CCWGG 3 cut(s) 845, 1183, 1588
MwoI GCNNNNNNNGC 4 cut(s) 397, 593, 1205, 1654
NcoI CCATGG 1 cut(s) 1791
NlaIV GGNNCC 4 cut(s) 392, 1088, 1242, 1478
NmuCI GTSAC 3 cut(s) 433, 1276, 1948
NsbI TGCGCA 1 cut(s) 755
NspI RCATGY 3 cut(s) 569, 1303, 1843
PagI TCATGA 1 cut(s) 1936
PaqCI CACCTGC 1 cut(s) 772
PceI AGGCCT 1 cut(s) 491
PciI ACATGT 3 cut(s) 565, 1299, 1839
PctI GAATGC 3 cut(s) 514, 598, 1835
PdmI GAANNNNTTC 4 cut(s) 117, 165, 839, 2021
PfeI GAWTC 3 cut(s) 107, 879, 1262
PflMI CCANNNNNTGG 2 cut(s) 1110, 1984
PfoI TCCNGGA 1 cut(s) 843
PkrI GCNGC 5 cut(s) 27, 402, 753, 758, 1656
PleI GAGTC 2 cut(s) 474, 665
PpsI GAGTC 2 cut(s) 474, 665
PpuMI RGGWCCY 1 cut(s) 871
PscI ACATGT 3 cut(s) 565, 1299, 1839
PshAI GACNNNNGTC 1 cut(s) 465
PsiI TTATAA 3 cut(s) 327, 1508, 1628
Psp5II RGGWCCY 1 cut(s) 871
Psp6I CCWGG 3 cut(s) 843, 1181, 1586
PspGI CCWGG 3 cut(s) 843, 1181, 1586
PspN4I GGNNCC 4 cut(s) 392, 1088, 1242, 1478
PspPI GGNCC 5 cut(s) 871, 1113, 1377, 1814, 1925
PspPPI RGGWCCY 1 cut(s) 871
PsuI RGATCY 4 cut(s) 280, 1086, 1476, 1781
PvuII CAGCTG 1 cut(s) 751
RsaI GTAC 4 cut(s) 151, 354, 1166, 1293
RsaNI GTAC 4 cut(s) 150, 353, 1165, 1292
RseI CAYNNNNRTG 2 cut(s) 1796, 1941
SaqAI TTAA 8 cut(s) 63, 444, 486, 734, 1215, 1583, 1607, 1809
SatI GCNGC 5 cut(s) 26, 401, 752, 757, 1655
Sau96I GGNCC 5 cut(s) 871, 1113, 1377, 1814, 1925
ScaI AGTACT 1 cut(s) 354
SchI GAGTC 2 cut(s) 475, 665
ScrFI CCNGG 3 cut(s) 845, 1183, 1588
SduI GDGCHC 1 cut(s) 1891
SfaNI GCATC 7 cut(s) 325, 368, 641, 651, 1114, 1387, 1458
SfcI CTRYAG 1 cut(s) 153
SinI GGWCC 4 cut(s) 871, 1113, 1377, 1925
SmiMI CAYNNNNRTG 2 cut(s) 1796, 1941
SmlI CTYRAG 9 cut(s) 443, 493, 646, 733, 852, 911, 1529, 1558, 1882
SmoI CTYRAG 9 cut(s) 443, 493, 646, 733, 852, 911, 1529, 1558, 1882
SseBI AGGCCT 1 cut(s) 491
SsiI CCGC 3 cut(s) 26, 218, 557
SspI AATATT 2 cut(s) 698, 1444
SspMI CTAG 8 cut(s) 411, 1061, 1481, 1685, 1715, 1736, 1959, 1970
StuI AGGCCT 1 cut(s) 491
StyD4I CCNGG 3 cut(s) 843, 1181, 1586
StyI CCWWGG 4 cut(s) 420, 1160, 1791, 1978
TaaI ACNGT 2 cut(s) 380, 767
TaqI TCGA 3 cut(s) 481, 877, 1001
TatI WGTACW 3 cut(s) 149, 352, 1291
TauI GCSGC 1 cut(s) 28
TfiI GAWTC 3 cut(s) 107, 879, 1262
Tru1I TTAA 8 cut(s) 63, 444, 486, 734, 1215, 1583, 1607, 1809
Tru9I TTAA 8 cut(s) 63, 444, 486, 734, 1215, 1583, 1607, 1809
TscAI CASTG 6 cut(s) 135, 1123, 1206, 1495, 1618, 1737
TseFI GTSAC 3 cut(s) 433, 1276, 1948
TseI GCWGC 4 cut(s) 400, 751, 756, 1654
Tsp45I GTSAC 3 cut(s) 433, 1276, 1948
TspDTI ATGAA 2 cut(s) 848, 2030
TspRI CASTG 6 cut(s) 135, 1123, 1206, 1495, 1618, 1737
Van91I CCANNNNNTGG 2 cut(s) 1110, 1984
Vha464I CTTAAG 2 cut(s) 443, 733
VneI GTGCAC 1 cut(s) 1887
VpaK11BI GGWCC 4 cut(s) 871, 1113, 1377, 1925
XapI RAATTY 4 cut(s) 181, 703, 1484, 1897
XbaI TCTAGA 1 cut(s) 1714
XceI RCATGY 3 cut(s) 569, 1303, 1843
XcmI CCANNNNNNNNNTGG 1 cut(s) 89
XmiI GTMKAC 1 cut(s) 624
XmnI GAANNNNTTC 4 cut(s) 117, 165, 839, 2021
XspI CTAG 8 cut(s) 411, 1061, 1481, 1685, 1715, 1736, 1959, 1970
ZrmI AGTACT 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.