Rh4DG318900

Sieve element occlusion C-terminus

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Reverse (-)
54214071 .. 54217411
3341 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG318900.1

Sequence Viewer

Length: 1848 bp
ATGGAAGTGGTTGGATTAGAAGAACCGCTCGGAAAGACCTTTGGTAAGATTTCACATGAGATACTTTGCAAGTGGCCTGATCAAGAAGATCTACACACAAGGACAATGCTATTATTTGATTTGCTTGGAAGTTATAAGTGGGATGCAAAAGTGGTATTAGTACTTGCATCTTTTGTAGCAAGTTACGGTGAATTGAGGCTCCTAATGCAGCTATGCTCTAGTAACCCCTTGGCATTATCAGTCACAATGCTTAAGCAGTTGCCTGCTGACATGAGTCCTTTGAAGCCTCGATTTAAGGCCTTGAGTTTGTTAGTGAATGCAATGGTGGATGTAACGAAGTATATCATCAAGTTTGAAAAGCTACCGCTTTCACATGTGGAGTTGGATTATGAGGAAAAGAATGCTACCAAGTCTATCATCTATATAGCTGTCTACTGGATCATTAGAGGCATCTTGAGATGCGCTTCGCAAATCACAGACTCAACACTTCTGAAATCTGAGCAATATTCAAATTCAACAATAATTGCAACATGGGAGGTCTTAAGTTTGGTGTATCGGCTGCGCAGCATTTACAGTCGCCTCAGACAGCAGGTGGAAATCTGTCATCAGCAAACAGAGACAAAGCTATATTGGAAGCTGATGAATGTCTTCCAGGAAACTCAAGTGGACAACCAAGAGGTGCTTCGACTCTTATTCGCTATGAGGGATGACTTGCCACTCAAGGATTGCTCCTCACAAGCAAAGCTTGGTGTATCTGATCTGAAGGGCAAGATAGTCATACTCTTGTTTTCAAGGCCAGAGTTCCTTTCGATAGACGAAACATTATTGTTGGTTCAGCAAACACATAATCATCCTCACTACAAAAATCTAGAGGGAAGTTACAGGATCGTATGGATCCCCATTCCAGTTTCCAGTCAATGGACCACTGCTGATGCGACAATGTTTGATTTCTTATCAAGTATTTTTCCTTGGTACTCGGTAAGGAAACCCTGGCTTCTTAACTCAGCAGTGGTGGCATTTATTAAAGAAGCATGGAACTACAAAAAGGAGCCGGTCGTGGTTGTGTTGGATTCACAAGGGAATGTCACAAACAAAAATGTACTTGACATGTTACTTATCTGGGGTGTCATTGCATACCCATTTTCAGCATCAAGAGAAAACGAACTTTGGCAAGAGCAGAACTGGACCTTGCAATTTATGGTTGATGCCATTGACCCCTGTTTGACCAAGTGGGTAGAAGAAGATAGAAATATTTGCATCTATGGAAGCAATAACATAGATTGGATCCTAGAATTCACTGGTAAGATGGAGATTATAAAAAGTGCAGGAGTAAAACTTGAGATGGTGTATGTTGGCAAGAGGAACTCAAGTCAACAAACGAGGAACATTTTAACCAGGGTTGATCATAAACAATTAAGCAGTGTATTGTCTTTTATAAAATCTCAATTGTTCTGGCTTAGGCTGCAAAGTATAAGAAGATCAAAACTCCGACTAGGAAAGCCGGAAACTACTGACCATGTTCTAGATGAGGTGTCAGCACTGCTAGATATGGATGGCAATGACACGAACTGGGCAGTAATAGGGAGAGGATCTAATTCCATGGATATGGTAAGACTTAAAGGGCCAGAGCTTATGGAATGCCTTGACATGTTTCCCAAATGGGGTGGAAGTGTTGCAGAGTTGGGGTTCTTGAGTGCACTTAGAAATTCCCTTGAACCATCTTTTCGTTCTCGACCTTGTGGTCATGACTATGATGTCACTCTCTCTAGTGAAGAACCAGCACTCCAAGGAATGATAGTTTGTGGCAAGTGTAAGCACCCCATGAAGAAGTTCGTTATCTATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

615

Amino Acids

70.64

Weight (kDa)

7.53

Isoelectric Point (pI)

37.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SEO_N PF14576 6 - 220 3.2e-65 Sieve element occlusion N-terminus
SEO_C PF14577 384 - 615 2.1e-73 Sieve element occlusion C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 135, 1316, 1436
AarI CACCTGC 1 cut(s) 580
AasI GACNNNNNNGTC 2 cut(s) 1740, 1754
Acc16I TGCGCA 1 cut(s) 563
Acc36I ACCTGC 1 cut(s) 580
AccB7I CCANNNNNTGG 1 cut(s) 918
AccBSI CCGCTC 1 cut(s) 28
AccI GTMKAC 1 cut(s) 432
AciI CCGC 2 cut(s) 26, 365
AclWI GGATC 7 cut(s) 446, 889, 893, 902, 1279, 1292, 1597
AcsI RAATTY 3 cut(s) 511, 1292, 1705
AcuI CTGAAG 1 cut(s) 782
AfaI GTAC 3 cut(s) 162, 974, 1101
AfiI CCNNNNNNNGG 2 cut(s) 918, 1661
AflII CTTAAG 2 cut(s) 251, 541
AflIII ACRYGT 3 cut(s) 373, 1107, 1647
AgsI TTSAA 6 cut(s) 283, 356, 510, 516, 792, 1715
AjnI CCWGG 3 cut(s) 651, 989, 1394
AjuI GAANNNNNNNTTGG 2 cut(s) 666, 698
AloI GAACNNNNNNTCC 2 cut(s) 1767, 1799
AluBI AGCT 7 cut(s) 211, 361, 428, 625, 637, 745, 1630
AluI AGCT 7 cut(s) 211, 361, 428, 625, 637, 745, 1630
Alw21I GWGCWC 1 cut(s) 1699
Alw26I GTCTC 1 cut(s) 611
Alw44I GTGCAC 1 cut(s) 1695
AlwI GGATC 7 cut(s) 446, 889, 893, 902, 1279, 1292, 1597
AoxI GGCC 4 cut(s) 74, 297, 794, 1622
ApaLI GTGCAC 1 cut(s) 1695
ApeKI GCWGC 4 cut(s) 208, 559, 564, 1462
ApoI RAATTY 3 cut(s) 511, 1292, 1705
Asp700I GAANNNNTTC 2 cut(s) 647, 1829
AspLEI GCGC 2 cut(s) 464, 564
AspS9I GGNCC 3 cut(s) 921, 1185, 1622
AsuHPI GGTGA 1 cut(s) 200
AvaII GGWCC 2 cut(s) 921, 1185
BaeGI GKGCMC 1 cut(s) 1699
BamHI GGATCC 2 cut(s) 894, 1284
BbsI GAAGAC 1 cut(s) 640
Bbv12I GWGCWC 1 cut(s) 1699
BbvI GCAGC 4 cut(s) 220, 546, 576, 1449
BccI CCATC 4 cut(s) 1300, 1336, 1547, 1726
BciT130I CCWGG 3 cut(s) 653, 991, 1396
BclI TGATCA 2 cut(s) 79, 1402
BcoDI GTCTC 1 cut(s) 611
BfaI CTAG 7 cut(s) 219, 869, 1289, 1493, 1523, 1544, 1767
BfrI CTTAAG 2 cut(s) 251, 541
BfuAI ACCTGC 1 cut(s) 580
BglII AGATCT 1 cut(s) 88
BisI GCNGC 4 cut(s) 209, 560, 565, 1463
BlsI GCNGC 4 cut(s) 210, 561, 566, 1464
BmcAI AGTACT 1 cut(s) 162
Bme1390I CCNGG 3 cut(s) 653, 991, 1396
Bme18I GGWCC 2 cut(s) 921, 1185
BmgT120I GGNCC 3 cut(s) 921, 1185, 1622
BmiI GGNNCC 4 cut(s) 200, 896, 1050, 1286
BmrFI CCNGG 3 cut(s) 653, 991, 1396
BmrI ACTGGG 1 cut(s) 1579
BmsI GCATC 8 cut(s) 133, 176, 449, 459, 922, 1157, 1195, 1266
BmuI ACTGGG 1 cut(s) 1579
BoxI GACNNNNGTC 1 cut(s) 273
BpiI GAAGAC 1 cut(s) 640
Bpu10I CCTNAGC 1 cut(s) 1457
BpuEI CTTGAG 7 cut(s) 322, 475, 645, 704, 1351, 1358, 1711
BsaJI CCNNGG 6 cut(s) 228, 968, 989, 1395, 1599, 1786
BsaXI ACNNNNNCTCC 2 cut(s) 1767, 1797
Bsc4I CCNNNNNNNGG 2 cut(s) 918, 1661
Bse118I RCCGGY 1 cut(s) 1051
Bse1I ACTGG 6 cut(s) 440, 905, 912, 1187, 1303, 1574
Bse3DI GCAATG 3 cut(s) 327, 1128, 1564
BseBI CCWGG 3 cut(s) 653, 991, 1396
BseDI CCNNGG 6 cut(s) 228, 968, 989, 1395, 1599, 1786
BseGI GGATG 5 cut(s) 148, 334, 712, 850, 1558
BseLI CCNNNNNNNGG 2 cut(s) 918, 1661
BseMI GCAATG 3 cut(s) 327, 1128, 1564
BseMII CTCAG 3 cut(s) 489, 595, 1017
BseNI ACTGG 6 cut(s) 440, 905, 912, 1187, 1303, 1574
BseRI GAGGAG 1 cut(s) 721
BseSI GKGCMC 1 cut(s) 1699
BseXI GCAGC 4 cut(s) 220, 546, 576, 1449
BsgI GTGCAG 1 cut(s) 1344
Bsh1285I CGRYCG 1 cut(s) 1056
BshFI GGCC 4 cut(s) 76, 299, 796, 1624
BsiEI CGRYCG 1 cut(s) 1056
BsiHKAI GWGCWC 1 cut(s) 1699
BsiSI CCGG 2 cut(s) 1052, 1502
BslI CCNNNNNNNGG 2 cut(s) 918, 1661
BsmAI GTCTC 1 cut(s) 611
BsmI GAATGC 3 cut(s) 322, 406, 1643
BsnI GGCC 4 cut(s) 76, 299, 796, 1624
Bsp1286I GDGCHC 1 cut(s) 1699
Bsp19I CCATGG 1 cut(s) 1599
BspACI CCGC 2 cut(s) 26, 365
BspANI GGCC 4 cut(s) 76, 299, 796, 1624
BspCNI CTCAG 3 cut(s) 490, 594, 1016
BspHI TCATGA 1 cut(s) 1744
BspLI GGNNCC 4 cut(s) 200, 896, 1050, 1286
BspMI ACCTGC 1 cut(s) 580
BspPI GGATC 7 cut(s) 446, 889, 893, 902, 1279, 1292, 1597
BspTI CTTAAG 2 cut(s) 251, 541
BsrBI CCGCTC 1 cut(s) 28
BsrDI GCAATG 3 cut(s) 327, 1128, 1564
BsrFI RCCGGY 1 cut(s) 1051
BsrI ACTGG 6 cut(s) 440, 905, 912, 1187, 1303, 1574
BssAI RCCGGY 1 cut(s) 1051
BssECI CCNNGG 6 cut(s) 228, 968, 989, 1395, 1599, 1786
BssT1I CCWWGG 4 cut(s) 228, 968, 1599, 1786
Bst2UI CCWGG 3 cut(s) 653, 991, 1396
Bst4CI ACNGT 2 cut(s) 188, 575
BstAFI CTTAAG 2 cut(s) 251, 541
BstC8I GCNNGC 1 cut(s) 264
BstDEI CTNAG 5 cut(s) 498, 581, 1003, 1457, 1700
BstDSI CCRYGG 1 cut(s) 1599
BstF5I GGATG 5 cut(s) 148, 334, 712, 850, 1558
BstHHI GCGC 2 cut(s) 464, 564
BstMAI GTCTC 1 cut(s) 611
BstMCI CGRYCG 1 cut(s) 1056
BstMWI GCNNNNNNNGC 3 cut(s) 205, 1013, 1462
BstNI CCWGG 3 cut(s) 653, 991, 1396
BstNSI RCATGY 3 cut(s) 377, 1111, 1651
BstPAI GACNNNNGTC 1 cut(s) 273
BstSCI CCNGG 3 cut(s) 651, 989, 1394
BstSLI GKGCMC 1 cut(s) 1699
BstV1I GCAGC 4 cut(s) 220, 546, 576, 1449
BstV2I GAAGAC 1 cut(s) 640
BstX2I RGATCY 4 cut(s) 88, 894, 1284, 1589
BstXI CCANNNNNNTGG 1 cut(s) 1606
BstYI RGATCY 4 cut(s) 88, 894, 1284, 1589
BsuRI GGCC 4 cut(s) 76, 299, 796, 1624
BtgI CCRYGG 1 cut(s) 1599
BtsCI GGATG 5 cut(s) 148, 334, 712, 850, 1558
BtsI GCAGTG 4 cut(s) 924, 1014, 1426, 1538
BtsIMutI CAGTG 5 cut(s) 924, 1014, 1296, 1426, 1538
BveI ACCTGC 1 cut(s) 580
Cac8I GCNNGC 1 cut(s) 264
CciI TCATGA 1 cut(s) 1744
CfoI GCGC 2 cut(s) 464, 564
Cfr10I RCCGGY 1 cut(s) 1051
Cfr13I GGNCC 3 cut(s) 921, 1185, 1622
Csp6I GTAC 3 cut(s) 161, 973, 1100
CspCI CAANNNNNGTGG 2 cut(s) 1645, 1680
CviQI GTAC 3 cut(s) 161, 973, 1100
DdeI CTNAG 5 cut(s) 498, 581, 1003, 1457, 1700
DrdI GACNNNNNNGTC 2 cut(s) 1740, 1754
DseDI GACNNNNNNGTC 2 cut(s) 1740, 1754
Eco130I CCWWGG 4 cut(s) 228, 968, 1599, 1786
Eco147I AGGCCT 1 cut(s) 299
Eco47I GGWCC 2 cut(s) 921, 1185
Eco57I CTGAAG 1 cut(s) 782
EcoRI GAATTC 1 cut(s) 1292
EcoRII CCWGG 3 cut(s) 651, 989, 1394
EcoT14I CCWWGG 4 cut(s) 228, 968, 1599, 1786
ErhI CCWWGG 4 cut(s) 228, 968, 1599, 1786
FalI AAGNNNNNCTT 4 cut(s) 666, 698, 729, 761
FbaI TGATCA 2 cut(s) 79, 1402
FblI GTMKAC 1 cut(s) 432
Fnu4HI GCNGC 4 cut(s) 209, 560, 565, 1463
FokI GGATG 5 cut(s) 155, 341, 719, 837, 1565
Fsp4HI GCNGC 4 cut(s) 209, 560, 565, 1463
FspBI CTAG 7 cut(s) 219, 869, 1289, 1493, 1523, 1544, 1767
FspI TGCGCA 1 cut(s) 563
GlaI GCGC 2 cut(s) 463, 563
GluI GCNGC 4 cut(s) 209, 560, 565, 1463
HaeIII GGCC 4 cut(s) 76, 299, 796, 1624
HapII CCGG 2 cut(s) 1052, 1502
HhaI GCGC 2 cut(s) 464, 564
Hin6I GCGC 2 cut(s) 462, 562
HinP1I GCGC 2 cut(s) 462, 562
HincII GTYRAC 1 cut(s) 1373
HindII GTYRAC 1 cut(s) 1373
HindIII AAGCTT 1 cut(s) 743
HinfI GANTC 4 cut(s) 274, 479, 687, 1070
HpaII CCGG 2 cut(s) 1052, 1502
HphI GGTGA 1 cut(s) 200
Hpy166II GTNNAC 4 cut(s) 433, 667, 1373, 1697
Hpy188I TCNGA 7 cut(s) 32, 492, 499, 584, 757, 762, 1490
Hpy188III TCNNGA 8 cut(s) 83, 454, 869, 1152, 1523, 1690, 1731, 1745
Hpy8I GTNNAC 4 cut(s) 433, 667, 1373, 1697
HpyAV CCTTC 1 cut(s) 757
HpyCH4III ACNGT 2 cut(s) 188, 575
HpyF10VI GCNNNNNNNGC 3 cut(s) 205, 1013, 1462
HpyF3I CTNAG 5 cut(s) 498, 581, 1003, 1457, 1700
HspAI GCGC 2 cut(s) 462, 562
Ksp22I TGATCA 2 cut(s) 79, 1402
LmnI GCTCC 3 cut(s) 204, 734, 1048
Lsp1109I GCAGC 4 cut(s) 220, 546, 576, 1449
LweI GCATC 8 cut(s) 133, 176, 449, 459, 922, 1157, 1195, 1266
MaeI CTAG 7 cut(s) 219, 869, 1289, 1493, 1523, 1544, 1767
MaeIII GTNAC 8 cut(s) 182, 221, 241, 331, 878, 1084, 1110, 1756
MbiI CCGCTC 1 cut(s) 28
MboII GAAGA 8 cut(s) 32, 98, 640, 1250, 1253, 1488, 1784, 1837
MfeI CAATTG 1 cut(s) 1445
MflI RGATCY 4 cut(s) 88, 894, 1284, 1589
MhlI GDGCHC 1 cut(s) 1699
MluCI AATT 9 cut(s) 191, 511, 522, 1193, 1292, 1412, 1445, 1594, 1705
MlyI GAGTC 3 cut(s) 283, 473, 681
MmeI TCCRAC 3 cut(s) 363, 1047, 1513
MroXI GAANNNNTTC 2 cut(s) 647, 1829
MseI TTAA 8 cut(s) 252, 294, 542, 999, 1023, 1391, 1415, 1617
MslI CAYNNNNRTG 2 cut(s) 1604, 1749
MspCI CTTAAG 2 cut(s) 251, 541
MspI CCGG 2 cut(s) 1052, 1502
MspR9I CCNGG 3 cut(s) 653, 991, 1396
MunI CAATTG 1 cut(s) 1445
Mva1269I GAATGC 3 cut(s) 322, 406, 1643
MvaI CCWGG 3 cut(s) 653, 991, 1396
MwoI GCNNNNNNNGC 3 cut(s) 205, 1013, 1462
NcoI CCATGG 1 cut(s) 1599
NlaIV GGNNCC 4 cut(s) 200, 896, 1050, 1286
NmuCI GTSAC 3 cut(s) 241, 1084, 1756
NsbI TGCGCA 1 cut(s) 563
NspI RCATGY 3 cut(s) 377, 1111, 1651
PagI TCATGA 1 cut(s) 1744
PaqCI CACCTGC 1 cut(s) 580
PceI AGGCCT 1 cut(s) 299
PciI ACATGT 3 cut(s) 373, 1107, 1647
PctI GAATGC 3 cut(s) 322, 406, 1643
PdmI GAANNNNTTC 2 cut(s) 647, 1829
PfeI GAWTC 1 cut(s) 1070
PflMI CCANNNNNTGG 1 cut(s) 918
PfoI TCCNGGA 1 cut(s) 651
PkrI GCNGC 4 cut(s) 210, 561, 566, 1464
PleI GAGTC 3 cut(s) 282, 473, 681
PpsI GAGTC 3 cut(s) 282, 473, 681
PscI ACATGT 3 cut(s) 373, 1107, 1647
PshAI GACNNNNGTC 1 cut(s) 273
PsiI TTATAA 3 cut(s) 135, 1316, 1436
Psp6I CCWGG 3 cut(s) 651, 989, 1394
PspGI CCWGG 3 cut(s) 651, 989, 1394
PspN4I GGNNCC 4 cut(s) 200, 896, 1050, 1286
PspPI GGNCC 3 cut(s) 921, 1185, 1622
PsuI RGATCY 4 cut(s) 88, 894, 1284, 1589
RsaI GTAC 3 cut(s) 162, 974, 1101
RsaNI GTAC 3 cut(s) 161, 973, 1100
RseI CAYNNNNRTG 2 cut(s) 1604, 1749
SaqAI TTAA 8 cut(s) 252, 294, 542, 999, 1023, 1391, 1415, 1617
SatI GCNGC 4 cut(s) 209, 560, 565, 1463
Sau96I GGNCC 3 cut(s) 921, 1185, 1622
ScaI AGTACT 1 cut(s) 162
SchI GAGTC 3 cut(s) 283, 473, 681
ScrFI CCNGG 3 cut(s) 653, 991, 1396
SduI GDGCHC 1 cut(s) 1699
SfaNI GCATC 8 cut(s) 133, 176, 449, 459, 922, 1157, 1195, 1266
SinI GGWCC 2 cut(s) 921, 1185
SmiMI CAYNNNNRTG 2 cut(s) 1604, 1749
SmlI CTYRAG 9 cut(s) 251, 301, 454, 541, 660, 719, 1337, 1366, 1690
SmoI CTYRAG 9 cut(s) 251, 301, 454, 541, 660, 719, 1337, 1366, 1690
Sse9I AATT 9 cut(s) 191, 511, 522, 1193, 1292, 1412, 1445, 1594, 1705
SseBI AGGCCT 1 cut(s) 299
SsiI CCGC 2 cut(s) 26, 365
SspI AATATT 2 cut(s) 506, 1252
SspMI CTAG 7 cut(s) 219, 869, 1289, 1493, 1523, 1544, 1767
StuI AGGCCT 1 cut(s) 299
StyD4I CCNGG 3 cut(s) 651, 989, 1394
StyI CCWWGG 4 cut(s) 228, 968, 1599, 1786
TaaI ACNGT 2 cut(s) 188, 575
TaqI TCGA 4 cut(s) 289, 685, 809, 1732
TasI AATT 9 cut(s) 191, 511, 522, 1193, 1292, 1412, 1445, 1594, 1705
TatI WGTACW 2 cut(s) 160, 1099
TfiI GAWTC 1 cut(s) 1070
Tru1I TTAA 8 cut(s) 252, 294, 542, 999, 1023, 1391, 1415, 1617
Tru9I TTAA 8 cut(s) 252, 294, 542, 999, 1023, 1391, 1415, 1617
TscAI CASTG 5 cut(s) 931, 1014, 1303, 1426, 1545
TseFI GTSAC 3 cut(s) 241, 1084, 1756
TseI GCWGC 4 cut(s) 208, 559, 564, 1462
Tsp45I GTSAC 3 cut(s) 241, 1084, 1756
TspDTI ATGAA 2 cut(s) 656, 1838
TspRI CASTG 5 cut(s) 931, 1014, 1303, 1426, 1545
Van91I CCANNNNNTGG 1 cut(s) 918
Vha464I CTTAAG 2 cut(s) 251, 541
VneI GTGCAC 1 cut(s) 1695
VpaK11BI GGWCC 2 cut(s) 921, 1185
XapI RAATTY 3 cut(s) 511, 1292, 1705
XbaI TCTAGA 2 cut(s) 868, 1522
XceI RCATGY 3 cut(s) 377, 1111, 1651
XmiI GTMKAC 1 cut(s) 432
XmnI GAANNNNTTC 2 cut(s) 647, 1829
XspI CTAG 7 cut(s) 219, 869, 1289, 1493, 1523, 1544, 1767
ZrmI AGTACT 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.