Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009665.1

Orthogroup ID

OG0010971

Physical Location & Seq

Genomic Coordinates Forward (+)

3281 .. 6267

Gene Structure 2987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009665.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1818 bp

atgaacatgcctggaagtgatcccttcttgccgcaatccatatcatctttagcagaagaagtcctgattaagaagctactgctcagccatgatcccgatggtcgtcattttgattctgaactatttctttgtgcagtggagaacatcatgctttgtactacagcagaagaagttcctgatgatgtaaatttagaaaaaatggaagtggttggattagaagaaccgctcggaaagaccttcggtaagatttcacatgagatactttgcaagtggcctgatcaagaagatccacacacaaggacaatgctattatttgatttgcttggaagttataagtgggatgcaaaagtggtattagtgcttgcatcttttgtagcaagttacggtgaattgaggctcctaatgcagctatgctctagtaaccccttggcattatcagtcacaatgcttaagcagttgcctgctgacatgagtcctttgaaacctcgatttaaggccttgagtttgttagtgaatgcaatggtggatgtaacgaacatttacagtcgcctcagacagcaggtggaaatctgtcatcagcaaacagagacaaagctatattggaagctgatgaatgtcttccaggaaactcaagtggacaaccaagaggtccttcgattcttattcgctatgagggatgacttgccactcaaggattgctcctcacaagcaaagcttggtgtatctgatctgaagggcaagatagtcatactcttgttttcaaggccagagttcctttcgatagacgaaacattattgttggttcagcaaacacataatcatcctcactacaaaaacctagagggaagttacaggatcgtatggatccccattccagtttccagtcaatggaccactgctgatgcgacaatgtttgatttcttatcaagtatttttccttggtactcggtaaggaaaccctggcttcttcactcagcagtggtggcatttattaaagaagcatggaactacaaaaaggagccggtcgtggttgtgttggattcacaagggaatgtcacaaacaaaaatgtacttgacatgttacttatctggggtgtcattgcatacccattttcagcttcaagagaaaacgaactttggcaagagcagaactggaccttgcaatttatggttgatgccattgacccctgtttgaccaagtgggtagaagaagatagaaatatttgcatctatggaagcaataacatagattggatcctagaattcactggtaagatggagattataaaaagtgcaggagtaaaacttgagatggtgtatgttggcaagaggaactcaagtcaacaaacgaggaacattttaaccagggttgatcataaacaattaagcagtgtattgtcttttataaaatctcaattgttctggcttaggctgcaaagtataagaagatcaaaactccgactaggaaagccggaaactactgaccatgttctagatgaggtgtcagcactgctagatatggatggcaacaacacgaactgggcagtaatagggagaggatctaattccatggatatggtaagacttaaagggccagagcttatggaatgccttgacatgtttcccaaatggggtggaagtgttgcagagttggggttcttgagtgcacttagaaattcccttgaaccatcttttcgttctggaccttgtggtcatgactatgatgtcactctctctagtgaagaactagcactccaaggaatggtagtttgtggcaagtgtaagcaccccatgaagaagttcgttatctataaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SEO_C SEO_N

Protein Analysis

605

Amino Acids

69.01

Weight (kDa)

5.8

Isoelectric Point (pI)

41.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67790
fragaria_vesca	FvH4_4g25330 FvH4_7g07630
malus_domestica	MD16G1104700.v1.1
prunus_persica	Prupe.1G241600_v2.0.a1 Prupe.1G241600_v2.0.a1
pyrus_communis	pycom16g08930
rosa_chinensis	RchiOBHm_Chr4g0432621
rosa_laevigata	RLG00000006829
rosa_multiflora	Rmu_co8424631.1_g000001 Rmu_sc0004612.1_g000008 Rmu_sc0009665.1_g000002
rosa_roxburghii	Rroxscaffold_5G00374080
rosa_rugosa	Rorug04G0260600.1 Rorug04G0260700.1
rosa_samantha	Rh4AG315500 Rh4BG323300 Rh4CG338400 Rh4DG318900
rosa_wichuraiana	Rw4G027430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	333, 1286, 1406
AarI	CACCTGC	1 cut(s)	550
AasI	GACNNNNNNGTC	2 cut(s)	1710, 1724
Acc36I	ACCTGC	1 cut(s)	550
AccB7I	CCANNNNNTGG	2 cut(s)	888, 1762
AccBSI	CCGCTC	1 cut(s)	226
AciI	CCGC	2 cut(s)	32, 224
AclWI	GGATC	9 cut(s)	14, 86, 281, 859, 863, 872, 1249, 1262, 1567
AcsI	RAATTY	3 cut(s)	187, 1262, 1675
AcuI	CTGAAG	1 cut(s)	752
AfaI	GTAC	3 cut(s)	157, 944, 1071
AfiI	CCNNNNNNNGG	3 cut(s)	888, 1631, 1762
AflII	CTTAAG	1 cut(s)	449
AflIII	ACRYGT	2 cut(s)	1077, 1617
AgsI	TTSAA	4 cut(s)	481, 762, 1122, 1685
AjnI	CCWGG	4 cut(s)	10, 621, 959, 1364
AjuI	GAANNNNNNNTTGG	2 cut(s)	636, 668
AloI	GAACNNNNNNTCC	2 cut(s)	1737, 1769
AluBI	AGCT	7 cut(s)	76, 409, 595, 607, 715, 1118, 1600
AluI	AGCT	7 cut(s)	76, 409, 595, 607, 715, 1118, 1600
Alw21I	GWGCWC	1 cut(s)	1669
Alw26I	GTCTC	1 cut(s)	581
Alw44I	GTGCAC	1 cut(s)	1665
AlwI	GGATC	9 cut(s)	14, 86, 281, 859, 863, 872, 1249, 1262, 1567
AoxI	GGCC	4 cut(s)	272, 495, 764, 1592
ApaLI	GTGCAC	1 cut(s)	1665
ApeKI	GCWGC	2 cut(s)	406, 1432
ApoI	RAATTY	3 cut(s)	187, 1262, 1675
Asp700I	GAANNNNTTC	4 cut(s)	123, 171, 617, 1799
AspS9I	GGNCC	5 cut(s)	649, 891, 1155, 1592, 1703
AsuHPI	GGTGA	1 cut(s)	398
AvaII	GGWCC	4 cut(s)	649, 891, 1155, 1703
BaeGI	GKGCMC	1 cut(s)	1669
BamHI	GGATCC	2 cut(s)	864, 1254
BbsI	GAAGAC	1 cut(s)	610
Bbv12I	GWGCWC	1 cut(s)	1669
BbvI	GCAGC	2 cut(s)	418, 1419
BccI	CCATC	5 cut(s)	92, 1270, 1306, 1517, 1696
BciT130I	CCWGG	4 cut(s)	12, 623, 961, 1366
BclI	TGATCA	2 cut(s)	277, 1372
BcoDI	GTCTC	1 cut(s)	581
BfaI	CTAG	8 cut(s)	417, 839, 1259, 1463, 1493, 1514, 1737, 1748
BfmI	CTRYAG	1 cut(s)	159
BfrI	CTTAAG	1 cut(s)	449
BfuAI	ACCTGC	1 cut(s)	550
BisI	GCNGC	3 cut(s)	32, 407, 1433
BlpI	GCTNAGC	1 cut(s)	83
BlsI	GCNGC	3 cut(s)	33, 408, 1434
Bme1390I	CCNGG	4 cut(s)	12, 623, 961, 1366
Bme18I	GGWCC	4 cut(s)	649, 891, 1155, 1703
BmgT120I	GGNCC	5 cut(s)	649, 891, 1155, 1592, 1703
BmiI	GGNNCC	4 cut(s)	398, 866, 1020, 1256
BmrFI	CCNGG	4 cut(s)	12, 623, 961, 1366
BmrI	ACTGGG	1 cut(s)	1549
BmsI	GCATC	5 cut(s)	331, 374, 892, 1165, 1236
BmuI	ACTGGG	1 cut(s)	1549
BoxI	GACNNNNGTC	1 cut(s)	471
BpiI	GAAGAC	1 cut(s)	610
Bpu10I	CCTNAGC	1 cut(s)	1427
Bpu1102I	GCTNAGC	1 cut(s)	83
BpuEI	CTTGAG	6 cut(s)	520, 615, 674, 1321, 1328, 1681
BsaJI	CCNNGG	6 cut(s)	426, 938, 959, 1365, 1569, 1756
BsaXI	ACNNNNNCTCC	2 cut(s)	1737, 1767
Bsc4I	CCNNNNNNNGG	3 cut(s)	888, 1631, 1762
Bse118I	RCCGGY	1 cut(s)	1021
Bse1I	ACTGG	5 cut(s)	875, 882, 1157, 1273, 1544
Bse3DI	GCAATG	2 cut(s)	525, 1098
BseBI	CCWGG	4 cut(s)	12, 623, 961, 1366
BseDI	CCNNGG	6 cut(s)	426, 938, 959, 1365, 1569, 1756
BseGI	GGATG	5 cut(s)	346, 532, 682, 820, 1528
BseLI	CCNNNNNNNGG	3 cut(s)	888, 1631, 1762
BseMI	GCAATG	2 cut(s)	525, 1098
BseMII	CTCAG	3 cut(s)	97, 565, 987
BseNI	ACTGG	5 cut(s)	875, 882, 1157, 1273, 1544
BseRI	GAGGAG	1 cut(s)	691
BseSI	GKGCMC	1 cut(s)	1669
BseXI	GCAGC	2 cut(s)	418, 1419
BsgI	GTGCAG	2 cut(s)	153, 1314
Bsh1285I	CGRYCG	1 cut(s)	1026
BshFI	GGCC	4 cut(s)	274, 497, 766, 1594
BsiEI	CGRYCG	1 cut(s)	1026
BsiHKAI	GWGCWC	1 cut(s)	1669
BsiSI	CCGG	2 cut(s)	1022, 1472
BslI	CCNNNNNNNGG	3 cut(s)	888, 1631, 1762
BsmAI	GTCTC	1 cut(s)	581
BsmI	GAATGC	2 cut(s)	520, 1613
BsnI	GGCC	4 cut(s)	274, 497, 766, 1594
Bsp1286I	GDGCHC	1 cut(s)	1669
Bsp1720I	GCTNAGC	1 cut(s)	83
Bsp19I	CCATGG	1 cut(s)	1569
BspACI	CCGC	2 cut(s)	32, 224
BspANI	GGCC	4 cut(s)	274, 497, 766, 1594
BspCNI	CTCAG	3 cut(s)	96, 564, 986
BspHI	TCATGA	1 cut(s)	1714
BspLI	GGNNCC	4 cut(s)	398, 866, 1020, 1256
BspMI	ACCTGC	1 cut(s)	550
BspPI	GGATC	9 cut(s)	14, 86, 281, 859, 863, 872, 1249, 1262, 1567
BspTI	CTTAAG	1 cut(s)	449
BsrBI	CCGCTC	1 cut(s)	226
BsrDI	GCAATG	2 cut(s)	525, 1098
BsrFI	RCCGGY	1 cut(s)	1021
BsrI	ACTGG	5 cut(s)	875, 882, 1157, 1273, 1544
BssAI	RCCGGY	1 cut(s)	1021
BssECI	CCNNGG	6 cut(s)	426, 938, 959, 1365, 1569, 1756
BssT1I	CCWWGG	4 cut(s)	426, 938, 1569, 1756
Bst2UI	CCWGG	4 cut(s)	12, 623, 961, 1366
Bst4CI	ACNGT	2 cut(s)	386, 545
BstAFI	CTTAAG	1 cut(s)	449
BstC8I	GCNNGC	2 cut(s)	363, 462
BstDEI	CTNAG	5 cut(s)	83, 551, 973, 1427, 1670
BstDSI	CCRYGG	1 cut(s)	1569
BstF5I	GGATG	5 cut(s)	346, 532, 682, 820, 1528
BstMAI	GTCTC	1 cut(s)	581
BstMCI	CGRYCG	1 cut(s)	1026
BstMWI	GCNNNNNNNGC	3 cut(s)	403, 983, 1432
BstNI	CCWGG	4 cut(s)	12, 623, 961, 1366
BstNSI	RCATGY	3 cut(s)	10, 1081, 1621
BstPAI	GACNNNNGTC	1 cut(s)	471
BstSCI	CCNGG	4 cut(s)	10, 621, 959, 1364
BstSFI	CTRYAG	1 cut(s)	159
BstSLI	GKGCMC	1 cut(s)	1669
BstV1I	GCAGC	2 cut(s)	418, 1419
BstV2I	GAAGAC	1 cut(s)	610
BstX2I	RGATCY	4 cut(s)	286, 864, 1254, 1559
BstXI	CCANNNNNNTGG	1 cut(s)	1576
BstYI	RGATCY	4 cut(s)	286, 864, 1254, 1559
BsuRI	GGCC	4 cut(s)	274, 497, 766, 1594
BtgI	CCRYGG	1 cut(s)	1569
BtsCI	GGATG	5 cut(s)	346, 532, 682, 820, 1528
BtsI	GCAGTG	5 cut(s)	141, 894, 984, 1396, 1508
BtsIMutI	CAGTG	6 cut(s)	141, 894, 984, 1266, 1396, 1508
BveI	ACCTGC	1 cut(s)	550
Cac8I	GCNNGC	2 cut(s)	363, 462
CciI	TCATGA	1 cut(s)	1714
Cfr10I	RCCGGY	1 cut(s)	1021
Cfr13I	GGNCC	5 cut(s)	649, 891, 1155, 1592, 1703
Csp6I	GTAC	3 cut(s)	156, 943, 1070
CspCI	CAANNNNNGTGG	2 cut(s)	1615, 1650
CviQI	GTAC	3 cut(s)	156, 943, 1070
DdeI	CTNAG	5 cut(s)	83, 551, 973, 1427, 1670
DrdI	GACNNNNNNGTC	2 cut(s)	1710, 1724
DseDI	GACNNNNNNGTC	2 cut(s)	1710, 1724
Eco130I	CCWWGG	4 cut(s)	426, 938, 1569, 1756
Eco147I	AGGCCT	1 cut(s)	497
Eco47I	GGWCC	4 cut(s)	649, 891, 1155, 1703
Eco57I	CTGAAG	1 cut(s)	752
EcoO109I	RGGNCCY	1 cut(s)	649
EcoRI	GAATTC	1 cut(s)	1262
EcoRII	CCWGG	4 cut(s)	10, 621, 959, 1364
EcoT14I	CCWWGG	4 cut(s)	426, 938, 1569, 1756
ErhI	CCWWGG	4 cut(s)	426, 938, 1569, 1756
FalI	AAGNNNNNCTT	4 cut(s)	636, 668, 699, 731
FbaI	TGATCA	2 cut(s)	277, 1372
Fnu4HI	GCNGC	3 cut(s)	32, 407, 1433
FokI	GGATG	5 cut(s)	353, 539, 689, 807, 1535
Fsp4HI	GCNGC	3 cut(s)	32, 407, 1433
FspBI	CTAG	8 cut(s)	417, 839, 1259, 1463, 1493, 1514, 1737, 1748
GluI	GCNGC	3 cut(s)	32, 407, 1433
HaeIII	GGCC	4 cut(s)	274, 497, 766, 1594
HapII	CCGG	2 cut(s)	1022, 1472
HincII	GTYRAC	1 cut(s)	1343
HindII	GTYRAC	1 cut(s)	1343
HindIII	AAGCTT	1 cut(s)	713
HinfI	GANTC	4 cut(s)	113, 472, 657, 1040
HpaII	CCGG	2 cut(s)	1022, 1472
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	3 cut(s)	637, 1343, 1667
Hpy188I	TCNGA	6 cut(s)	118, 230, 554, 727, 732, 1460
Hpy188III	TCNNGA	9 cut(s)	64, 95, 176, 281, 1122, 1493, 1660, 1701, 1715
Hpy8I	GTNNAC	3 cut(s)	637, 1343, 1667
HpyAV	CCTTC	4 cut(s)	34, 247, 662, 727
HpyCH4III	ACNGT	2 cut(s)	386, 545
HpyF10VI	GCNNNNNNNGC	3 cut(s)	403, 983, 1432
HpyF3I	CTNAG	5 cut(s)	83, 551, 973, 1427, 1670
Ksp22I	TGATCA	2 cut(s)	277, 1372
LmnI	GCTCC	3 cut(s)	402, 704, 1018
Lsp1109I	GCAGC	2 cut(s)	418, 1419
LweI	GCATC	5 cut(s)	331, 374, 892, 1165, 1236
MaeI	CTAG	8 cut(s)	417, 839, 1259, 1463, 1493, 1514, 1737, 1748
MaeIII	GTNAC	8 cut(s)	380, 419, 439, 529, 848, 1054, 1080, 1726
MbiI	CCGCTC	1 cut(s)	226
MfeI	CAATTG	1 cut(s)	1415
MflI	RGATCY	4 cut(s)	286, 864, 1254, 1559
MhlI	GDGCHC	1 cut(s)	1669
MluCI	AATT	8 cut(s)	187, 389, 1163, 1262, 1382, 1415, 1564, 1675
MlyI	GAGTC	1 cut(s)	481
MmeI	TCCRAC	3 cut(s)	190, 1017, 1483
MroXI	GAANNNNTTC	4 cut(s)	123, 171, 617, 1799
MseI	TTAA	7 cut(s)	69, 450, 492, 993, 1361, 1385, 1587
MslI	CAYNNNNRTG	2 cut(s)	1574, 1719
MspCI	CTTAAG	1 cut(s)	449
MspI	CCGG	2 cut(s)	1022, 1472
MspR9I	CCNGG	4 cut(s)	12, 623, 961, 1366
MunI	CAATTG	1 cut(s)	1415
Mva1269I	GAATGC	2 cut(s)	520, 1613
MvaI	CCWGG	4 cut(s)	12, 623, 961, 1366
MwoI	GCNNNNNNNGC	3 cut(s)	403, 983, 1432
NcoI	CCATGG	1 cut(s)	1569
NlaIV	GGNNCC	4 cut(s)	398, 866, 1020, 1256
NmuCI	GTSAC	3 cut(s)	439, 1054, 1726
NspI	RCATGY	3 cut(s)	10, 1081, 1621
PagI	TCATGA	1 cut(s)	1714
PaqCI	CACCTGC	1 cut(s)	550
PceI	AGGCCT	1 cut(s)	497
PciI	ACATGT	2 cut(s)	1077, 1617
PctI	GAATGC	2 cut(s)	520, 1613
PdmI	GAANNNNTTC	4 cut(s)	123, 171, 617, 1799
PfeI	GAWTC	3 cut(s)	113, 657, 1040
PflMI	CCANNNNNTGG	2 cut(s)	888, 1762
PfoI	TCCNGGA	1 cut(s)	621
PkrI	GCNGC	3 cut(s)	33, 408, 1434
PleI	GAGTC	1 cut(s)	480
PpsI	GAGTC	1 cut(s)	480
PpuMI	RGGWCCY	1 cut(s)	649
PscI	ACATGT	2 cut(s)	1077, 1617
PshAI	GACNNNNGTC	1 cut(s)	471
PsiI	TTATAA	3 cut(s)	333, 1286, 1406
Psp5II	RGGWCCY	1 cut(s)	649
Psp6I	CCWGG	4 cut(s)	10, 621, 959, 1364
PspGI	CCWGG	4 cut(s)	10, 621, 959, 1364
PspN4I	GGNNCC	4 cut(s)	398, 866, 1020, 1256
PspPI	GGNCC	5 cut(s)	649, 891, 1155, 1592, 1703
PspPPI	RGGWCCY	1 cut(s)	649
PsuI	RGATCY	4 cut(s)	286, 864, 1254, 1559
RsaI	GTAC	3 cut(s)	157, 944, 1071
RsaNI	GTAC	3 cut(s)	156, 943, 1070
RseI	CAYNNNNRTG	2 cut(s)	1574, 1719
SaqAI	TTAA	7 cut(s)	69, 450, 492, 993, 1361, 1385, 1587
SatI	GCNGC	3 cut(s)	32, 407, 1433
Sau96I	GGNCC	5 cut(s)	649, 891, 1155, 1592, 1703
SchI	GAGTC	1 cut(s)	481
ScrFI	CCNGG	4 cut(s)	12, 623, 961, 1366
SduI	GDGCHC	1 cut(s)	1669
SfaNI	GCATC	5 cut(s)	331, 374, 892, 1165, 1236
SfcI	CTRYAG	1 cut(s)	159
SinI	GGWCC	4 cut(s)	649, 891, 1155, 1703
SmiMI	CAYNNNNRTG	2 cut(s)	1574, 1719
SmlI	CTYRAG	7 cut(s)	449, 499, 630, 689, 1307, 1336, 1660
SmoI	CTYRAG	7 cut(s)	449, 499, 630, 689, 1307, 1336, 1660
Sse9I	AATT	8 cut(s)	187, 389, 1163, 1262, 1382, 1415, 1564, 1675
SseBI	AGGCCT	1 cut(s)	497
SsiI	CCGC	2 cut(s)	32, 224
SspI	AATATT	1 cut(s)	1222
SspMI	CTAG	8 cut(s)	417, 839, 1259, 1463, 1493, 1514, 1737, 1748
StuI	AGGCCT	1 cut(s)	497
StyD4I	CCNGG	4 cut(s)	10, 621, 959, 1364
StyI	CCWWGG	4 cut(s)	426, 938, 1569, 1756
TaaI	ACNGT	2 cut(s)	386, 545
TaqI	TCGA	3 cut(s)	487, 655, 779
TasI	AATT	8 cut(s)	187, 389, 1163, 1262, 1382, 1415, 1564, 1675
TatI	WGTACW	2 cut(s)	155, 1069
TauI	GCSGC	1 cut(s)	34
TfiI	GAWTC	3 cut(s)	113, 657, 1040
Tru1I	TTAA	7 cut(s)	69, 450, 492, 993, 1361, 1385, 1587
Tru9I	TTAA	7 cut(s)	69, 450, 492, 993, 1361, 1385, 1587
TscAI	CASTG	6 cut(s)	141, 901, 984, 1273, 1396, 1515
TseFI	GTSAC	3 cut(s)	439, 1054, 1726
TseI	GCWGC	2 cut(s)	406, 1432
Tsp45I	GTSAC	3 cut(s)	439, 1054, 1726
TspDTI	ATGAA	3 cut(s)	17, 626, 1808
TspRI	CASTG	6 cut(s)	141, 901, 984, 1273, 1396, 1515
Van91I	CCANNNNNTGG	2 cut(s)	888, 1762
Vha464I	CTTAAG	1 cut(s)	449
VneI	GTGCAC	1 cut(s)	1665
VpaK11BI	GGWCC	4 cut(s)	649, 891, 1155, 1703
XapI	RAATTY	3 cut(s)	187, 1262, 1675
XbaI	TCTAGA	1 cut(s)	1492
XceI	RCATGY	3 cut(s)	10, 1081, 1621
XcmI	CCANNNNNNNNNTGG	1 cut(s)	95
XmnI	GAANNNNTTC	4 cut(s)	123, 171, 617, 1799
XspI	CTAG	8 cut(s)	417, 839, 1259, 1463, 1493, 1514, 1737, 1748

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.