Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8424631.1

Orthogroup ID

OG0010971

Physical Location & Seq

Genomic Coordinates Forward (+)

233 .. 1243

Gene Structure 1011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8424631.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

atgtttgatttcttatcaagtatttttccttggtactcggtaaggaaaccctggcttcttcactcagcagtggtggcatttattaaagaagcatggaactacaaaaaggagccggtcgtggttgtgttggattcacaagggaatgtcacaaacaaaaatgtacttgacatgttacttatctggggtgtcattgcatacccattttcagcttcaagagaaaacgaactttggcaagagcagaactggaccttgcaatttatggttgatgccattgacccctgtttgaccaagtgggtagaagaagatagaaatatttgcatctatggaagcaataacatagattggatcctagaattcactggtaagatggagattataaaaagtgcaggagtaaaacttgagatggtgtatgttggcaagaggaactcaagtcaacaaacgaggaacattttaaccggggttgatcataaacaattaagcagtgtattgtcttttataaaatctcaattgttctggcttaggctgcaaagtataagaagatcaaaactccgactaggaaagccggaaactactgaccatgttctagatgaggtgtcagcactgctagatatggatggcaatgacacgaactgggcagtaatagggagaggatctaattccatggatatggtaagacttaaagggccagagcttatggaatgccttgacatgtttcccaaatggggtggaagtgttgcagagttggggttcttgagtgcacttagaaattcccttgaaccatcttttcgttctggaccttgtggtcatgactatgatgtcactctctctagtgaagaactagcactccaaggaatggtagtttgtggcaagtgtaagcaccccatgaagaagttcgttatctataaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SEO_C SEO_N

Protein Analysis

302

Amino Acids

34.49

Weight (kDa)

6.54

Isoelectric Point (pI)

43.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67790
fragaria_vesca	FvH4_4g25330 FvH4_7g07630
malus_domestica	MD16G1104700.v1.1
prunus_persica	Prupe.1G241600_v2.0.a1 Prupe.1G241600_v2.0.a1
pyrus_communis	pycom16g08930
rosa_chinensis	RchiOBHm_Chr4g0432621
rosa_laevigata	RLG00000006829
rosa_multiflora	Rmu_co8424631.1_g000001 Rmu_sc0004612.1_g000008 Rmu_sc0009665.1_g000002
rosa_roxburghii	Rroxscaffold_5G00374080
rosa_rugosa	Rorug04G0260600.1 Rorug04G0260700.1
rosa_samantha	Rh4AG315500 Rh4BG323300 Rh4CG338400 Rh4DG318900
rosa_wichuraiana	Rw4G027430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	377, 497
AasI	GACNNNNNNGTC	2 cut(s)	801, 815
AccB7I	CCANNNNNTGG	1 cut(s)	853
AclWI	GGATC	3 cut(s)	340, 353, 658
AcsI	RAATTY	2 cut(s)	353, 766
AfaI	GTAC	2 cut(s)	35, 162
AfiI	CCNNNNNNNGG	2 cut(s)	722, 853
AflIII	ACRYGT	2 cut(s)	168, 708
AgsI	TTSAA	2 cut(s)	213, 776
AjnI	CCWGG	1 cut(s)	50
AloI	GAACNNNNNNTCC	2 cut(s)	828, 860
AluBI	AGCT	2 cut(s)	209, 691
AluI	AGCT	2 cut(s)	209, 691
Alw21I	GWGCWC	1 cut(s)	760
Alw44I	GTGCAC	1 cut(s)	756
AlwI	GGATC	3 cut(s)	340, 353, 658
AoxI	GGCC	1 cut(s)	683
ApaLI	GTGCAC	1 cut(s)	756
ApeKI	GCWGC	1 cut(s)	523
ApoI	RAATTY	2 cut(s)	353, 766
Asp700I	GAANNNNTTC	1 cut(s)	890
AspS9I	GGNCC	3 cut(s)	246, 683, 794
AsuC2I	CCSGG	1 cut(s)	457
AvaII	GGWCC	2 cut(s)	246, 794
BaeGI	GKGCMC	1 cut(s)	760
BamHI	GGATCC	1 cut(s)	345
Bbv12I	GWGCWC	1 cut(s)	760
BbvI	GCAGC	1 cut(s)	510
BccI	CCATC	4 cut(s)	361, 397, 608, 787
BciT130I	CCWGG	1 cut(s)	52
BclI	TGATCA	1 cut(s)	463
BcnI	CCSGG	1 cut(s)	457
BfaI	CTAG	6 cut(s)	350, 554, 584, 605, 828, 839
BisI	GCNGC	1 cut(s)	524
BlsI	GCNGC	1 cut(s)	525
Bme1390I	CCNGG	2 cut(s)	52, 457
Bme18I	GGWCC	2 cut(s)	246, 794
BmgT120I	GGNCC	3 cut(s)	246, 683, 794
BmiI	GGNNCC	2 cut(s)	111, 347
BmrFI	CCNGG	2 cut(s)	52, 457
BmrI	ACTGGG	1 cut(s)	640
BmsI	GCATC	2 cut(s)	256, 327
BmuI	ACTGGG	1 cut(s)	640
Bpu10I	CCTNAGC	1 cut(s)	518
BpuEI	CTTGAG	3 cut(s)	412, 419, 772
BpuMI	CCSGG	1 cut(s)	457
BsaJI	CCNNGG	5 cut(s)	29, 50, 456, 660, 847
BsaXI	ACNNNNNCTCC	2 cut(s)	828, 858
Bsc4I	CCNNNNNNNGG	2 cut(s)	722, 853
Bse118I	RCCGGY	1 cut(s)	112
Bse1I	ACTGG	3 cut(s)	248, 364, 635
Bse3DI	GCAATG	2 cut(s)	189, 625
BseBI	CCWGG	1 cut(s)	52
BseDI	CCNNGG	5 cut(s)	29, 50, 456, 660, 847
BseGI	GGATG	1 cut(s)	619
BseLI	CCNNNNNNNGG	2 cut(s)	722, 853
BseMI	GCAATG	2 cut(s)	189, 625
BseMII	CTCAG	1 cut(s)	78
BseNI	ACTGG	3 cut(s)	248, 364, 635
BseSI	GKGCMC	1 cut(s)	760
BseXI	GCAGC	1 cut(s)	510
BsgI	GTGCAG	1 cut(s)	405
Bsh1285I	CGRYCG	1 cut(s)	117
BshFI	GGCC	1 cut(s)	685
BsiEI	CGRYCG	1 cut(s)	117
BsiHKAI	GWGCWC	1 cut(s)	760
BsiSI	CCGG	3 cut(s)	113, 456, 563
BslI	CCNNNNNNNGG	2 cut(s)	722, 853
BsmI	GAATGC	1 cut(s)	704
BsnI	GGCC	1 cut(s)	685
Bsp1286I	GDGCHC	1 cut(s)	760
Bsp143I	GATC	4 cut(s)	345, 463, 539, 650
Bsp19I	CCATGG	1 cut(s)	660
BspANI	GGCC	1 cut(s)	685
BspCNI	CTCAG	1 cut(s)	77
BspHI	TCATGA	1 cut(s)	805
BspLI	GGNNCC	2 cut(s)	111, 347
BspPI	GGATC	3 cut(s)	340, 353, 658
BsrDI	GCAATG	2 cut(s)	189, 625
BsrFI	RCCGGY	1 cut(s)	112
BsrI	ACTGG	3 cut(s)	248, 364, 635
BssAI	RCCGGY	1 cut(s)	112
BssECI	CCNNGG	5 cut(s)	29, 50, 456, 660, 847
BssMI	GATC	4 cut(s)	345, 463, 539, 650
BssT1I	CCWWGG	3 cut(s)	29, 660, 847
Bst2UI	CCWGG	1 cut(s)	52
BstDEI	CTNAG	3 cut(s)	64, 518, 761
BstDSI	CCRYGG	1 cut(s)	660
BstF5I	GGATG	1 cut(s)	619
BstKTI	GATC	4 cut(s)	348, 466, 542, 653
BstMBI	GATC	4 cut(s)	345, 463, 539, 650
BstMCI	CGRYCG	1 cut(s)	117
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 523
BstNI	CCWGG	1 cut(s)	52
BstNSI	RCATGY	2 cut(s)	172, 712
BstSCI	CCNGG	2 cut(s)	50, 455
BstSLI	GKGCMC	1 cut(s)	760
BstV1I	GCAGC	1 cut(s)	510
BstX2I	RGATCY	2 cut(s)	345, 650
BstXI	CCANNNNNNTGG	1 cut(s)	667
BstYI	RGATCY	2 cut(s)	345, 650
BsuRI	GGCC	1 cut(s)	685
BtgI	CCRYGG	1 cut(s)	660
BtsCI	GGATG	1 cut(s)	619
BtsI	GCAGTG	3 cut(s)	75, 487, 599
BtsIMutI	CAGTG	4 cut(s)	75, 357, 487, 599
CciI	TCATGA	1 cut(s)	805
Cfr10I	RCCGGY	1 cut(s)	112
Cfr13I	GGNCC	3 cut(s)	246, 683, 794
Csp6I	GTAC	2 cut(s)	34, 161
CspCI	CAANNNNNGTGG	2 cut(s)	706, 741
CviAII	CATG	7 cut(s)	93, 169, 578, 661, 709, 806, 883
CviJI	RGCY	8 cut(s)	55, 112, 209, 517, 523, 562, 685, 691
CviKI_1	RGCY	8 cut(s)	55, 112, 209, 517, 523, 562, 685, 691
CviQI	GTAC	2 cut(s)	34, 161
DdeI	CTNAG	3 cut(s)	64, 518, 761
DpnI	GATC	4 cut(s)	347, 465, 541, 652
DpnII	GATC	4 cut(s)	345, 463, 539, 650
DrdI	GACNNNNNNGTC	2 cut(s)	801, 815
DseDI	GACNNNNNNGTC	2 cut(s)	801, 815
Eco130I	CCWWGG	3 cut(s)	29, 660, 847
Eco47I	GGWCC	2 cut(s)	246, 794
EcoRI	GAATTC	1 cut(s)	353
EcoRII	CCWGG	1 cut(s)	50
EcoT14I	CCWWGG	3 cut(s)	29, 660, 847
ErhI	CCWWGG	3 cut(s)	29, 660, 847
FaeI	CATG	7 cut(s)	96, 172, 581, 664, 712, 809, 886
FatI	CATG	7 cut(s)	92, 168, 577, 660, 708, 805, 882
FbaI	TGATCA	1 cut(s)	463
Fnu4HI	GCNGC	1 cut(s)	524
FokI	GGATG	1 cut(s)	626
Fsp4HI	GCNGC	1 cut(s)	524
FspBI	CTAG	6 cut(s)	350, 554, 584, 605, 828, 839
GluI	GCNGC	1 cut(s)	524
HaeIII	GGCC	1 cut(s)	685
HapII	CCGG	3 cut(s)	113, 456, 563
Hin1II	CATG	7 cut(s)	96, 172, 581, 664, 712, 809, 886
HincII	GTYRAC	1 cut(s)	434
HindII	GTYRAC	1 cut(s)	434
HinfI	GANTC	1 cut(s)	131
HpaII	CCGG	3 cut(s)	113, 456, 563
Hpy166II	GTNNAC	2 cut(s)	434, 758
Hpy188I	TCNGA	1 cut(s)	551
Hpy188III	TCNNGA	5 cut(s)	213, 584, 751, 792, 806
Hpy8I	GTNNAC	2 cut(s)	434, 758
HpyCH4V	TGCA	7 cut(s)	194, 253, 318, 386, 526, 737, 758
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 523
HpyF3I	CTNAG	3 cut(s)	64, 518, 761
Hsp92II	CATG	7 cut(s)	96, 172, 581, 664, 712, 809, 886
Ksp22I	TGATCA	1 cut(s)	463
Kzo9I	GATC	4 cut(s)	345, 463, 539, 650
LmnI	GCTCC	1 cut(s)	109
Lsp1109I	GCAGC	1 cut(s)	510
LweI	GCATC	2 cut(s)	256, 327
MaeI	CTAG	6 cut(s)	350, 554, 584, 605, 828, 839
MaeIII	GTNAC	3 cut(s)	145, 171, 817
MalI	GATC	4 cut(s)	347, 465, 541, 652
MboI	GATC	4 cut(s)	345, 463, 539, 650
MboII	GAAGA	6 cut(s)	50, 311, 314, 549, 845, 898
MfeI	CAATTG	1 cut(s)	506
MflI	RGATCY	2 cut(s)	345, 650
MhlI	GDGCHC	1 cut(s)	760
MluCI	AATT	6 cut(s)	254, 353, 473, 506, 655, 766
MmeI	TCCRAC	2 cut(s)	108, 574
MnlI	CCTC	4 cut(s)	414, 435, 583, 641
MroXI	GAANNNNTTC	1 cut(s)	890
MseI	TTAA	4 cut(s)	84, 452, 476, 678
MslI	CAYNNNNRTG	2 cut(s)	665, 810
MspI	CCGG	3 cut(s)	113, 456, 563
MspR9I	CCNGG	2 cut(s)	52, 457
MunI	CAATTG	1 cut(s)	506
Mva1269I	GAATGC	1 cut(s)	704
MvaI	CCWGG	1 cut(s)	52
MwoI	GCNNNNNNNGC	2 cut(s)	74, 523
NciI	CCSGG	1 cut(s)	457
NcoI	CCATGG	1 cut(s)	660
NdeII	GATC	4 cut(s)	345, 463, 539, 650
NlaIII	CATG	7 cut(s)	96, 172, 581, 664, 712, 809, 886
NlaIV	GGNNCC	2 cut(s)	111, 347
NmuCI	GTSAC	2 cut(s)	145, 817
NspI	RCATGY	2 cut(s)	172, 712
PagI	TCATGA	1 cut(s)	805
PciI	ACATGT	2 cut(s)	168, 708
PctI	GAATGC	1 cut(s)	704
PdmI	GAANNNNTTC	1 cut(s)	890
PfeI	GAWTC	1 cut(s)	131
PflMI	CCANNNNNTGG	1 cut(s)	853
PkrI	GCNGC	1 cut(s)	525
PscI	ACATGT	2 cut(s)	168, 708
PsiI	TTATAA	2 cut(s)	377, 497
Psp6I	CCWGG	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	50
PspN4I	GGNNCC	2 cut(s)	111, 347
PspPI	GGNCC	3 cut(s)	246, 683, 794
PsuI	RGATCY	2 cut(s)	345, 650
RsaI	GTAC	2 cut(s)	35, 162
RsaNI	GTAC	2 cut(s)	34, 161
RseI	CAYNNNNRTG	2 cut(s)	665, 810
SaqAI	TTAA	4 cut(s)	84, 452, 476, 678
SatI	GCNGC	1 cut(s)	524
Sau3AI	GATC	4 cut(s)	345, 463, 539, 650
Sau96I	GGNCC	3 cut(s)	246, 683, 794
ScrFI	CCNGG	2 cut(s)	52, 457
SduI	GDGCHC	1 cut(s)	760
SetI	ASST	5 cut(s)	211, 251, 594, 693, 799
SfaNI	GCATC	2 cut(s)	256, 327
SinI	GGWCC	2 cut(s)	246, 794
SmiMI	CAYNNNNRTG	2 cut(s)	665, 810
SmlI	CTYRAG	3 cut(s)	398, 427, 751
SmoI	CTYRAG	3 cut(s)	398, 427, 751
Sse9I	AATT	6 cut(s)	254, 353, 473, 506, 655, 766
SspI	AATATT	1 cut(s)	313
SspMI	CTAG	6 cut(s)	350, 554, 584, 605, 828, 839
StyD4I	CCNGG	2 cut(s)	50, 455
StyI	CCWWGG	3 cut(s)	29, 660, 847
TasI	AATT	6 cut(s)	254, 353, 473, 506, 655, 766
TatI	WGTACW	1 cut(s)	160
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	4 cut(s)	84, 452, 476, 678
Tru9I	TTAA	4 cut(s)	84, 452, 476, 678
TscAI	CASTG	4 cut(s)	75, 364, 487, 606
TseFI	GTSAC	2 cut(s)	145, 817
TseI	GCWGC	1 cut(s)	523
Tsp45I	GTSAC	2 cut(s)	145, 817
TspDTI	ATGAA	1 cut(s)	899
TspRI	CASTG	4 cut(s)	75, 364, 487, 606
Van91I	CCANNNNNTGG	1 cut(s)	853
VneI	GTGCAC	1 cut(s)	756
VpaK11BI	GGWCC	2 cut(s)	246, 794
XapI	RAATTY	2 cut(s)	353, 766
XbaI	TCTAGA	1 cut(s)	583
XceI	RCATGY	2 cut(s)	172, 712
XmnI	GAANNNNTTC	1 cut(s)	890
XspI	CTAG	6 cut(s)	350, 554, 584, 605, 828, 839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.