pycom16g08930

Sieve element occlusion C-terminus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0010971
Physical Location & Seq
Forward (+)
5970135 .. 5970697
563 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g08930.1

Sequence Viewer

Length: 372 bp
ATGGACTCGCTCGGAAGTGACTCTGTGTCATCTTTCGATCCTGACGGTTGCCATTTTGATTCTGAGCTCTTGCTTTGTGCAGTGGAGAAAATCATGATTTGCACGGCTGCATCAGAAGAAATGAACTCTCGAGCACTTGTGATTAACATCATGATCTTCTATTCCAAGCTTTTCATCTCATCAAACACTTACTTTCAGGTTCTTGACGAAGACCTTGATGCCAATGAAAAAATTATTGTAAGCGACATGGAAGAACTCGAAACACTAGAAGCTCTCGGAATATTTGGATCAGAAACCTTTTGTAAGATTTCGCATGAGGTAATTCACCTTCTCTCTCTCTCTCTCTCATTGATCTTCGTGCAGATGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SEO_C SEO_N

Protein Analysis

124

Amino Acids

13.74

Weight (kDa)

4.16

Isoelectric Point (pI)

44.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 32, 295
AhdI GACNNNNNGTC 1 cut(s) 25
AluBI AGCT 3 cut(s) 67, 169, 272
AluI AGCT 3 cut(s) 67, 169, 272
Alw21I GWGCWC 2 cut(s) 69, 136
AlwI GGATC 2 cut(s) 32, 295
Ama87I CYCGRG 1 cut(s) 129
ApeKI GCWGC 1 cut(s) 107
AsuHPI GGTGA 1 cut(s) 317
AvaI CYCGRG 1 cut(s) 129
BanII GRGCYC 1 cut(s) 69
BarI GAAGNNNNNNTAC 2 cut(s) 312, 344
BbsI GAAGAC 1 cut(s) 216
Bbv12I GWGCWC 2 cut(s) 69, 136
BbvI GCAGC 1 cut(s) 94
BceAI ACGGC 1 cut(s) 120
BfaI CTAG 1 cut(s) 266
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
BmeRI GACNNNNNGTC 1 cut(s) 25
BmeT110I CYCGRG 1 cut(s) 129
BmsI GCATC 3 cut(s) 119, 208, 354
BpiI GAAGAC 1 cut(s) 216
BsaBI GATNNNNATC 1 cut(s) 146
Bse8I GATNNNNATC 1 cut(s) 146
BseJI GATNNNNATC 1 cut(s) 146
BseMII CTCAG 1 cut(s) 54
BseXI GCAGC 1 cut(s) 94
BsgI GTGCAG 1 cut(s) 99
BsiHKAI GWGCWC 2 cut(s) 69, 136
BsiHKCI CYCGRG 1 cut(s) 129
BsoBI CYCGRG 1 cut(s) 129
Bsp1286I GDGCHC 2 cut(s) 69, 136
Bsp143I GATC 4 cut(s) 37, 153, 287, 351
BspCNI CTCAG 1 cut(s) 55
BspHI TCATGA 2 cut(s) 93, 150
BspPI GGATC 2 cut(s) 32, 295
BssMI GATC 4 cut(s) 37, 153, 287, 351
Bst4CI ACNGT 1 cut(s) 47
BstDEI CTNAG 1 cut(s) 63
BstKTI GATC 4 cut(s) 40, 156, 290, 354
BstMBI GATC 4 cut(s) 37, 153, 287, 351
BstV1I GCAGC 1 cut(s) 94
BstV2I GAAGAC 1 cut(s) 216
BtsI GCAGTG 1 cut(s) 87
BtsIMutI CAGTG 1 cut(s) 87
CciI TCATGA 2 cut(s) 93, 150
CviAII CATG 4 cut(s) 94, 151, 247, 314
CviJI RGCY 4 cut(s) 67, 107, 169, 272
CviKI_1 RGCY 4 cut(s) 67, 107, 169, 272
DdeI CTNAG 1 cut(s) 63
DpnI GATC 4 cut(s) 39, 155, 289, 353
DpnII GATC 4 cut(s) 37, 153, 287, 351
DriI GACNNNNNGTC 1 cut(s) 25
Eam1105I GACNNNNNGTC 1 cut(s) 25
Ecl136II GAGCTC 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 69
Eco53kI GAGCTC 1 cut(s) 67
Eco88I CYCGRG 1 cut(s) 129
EcoICRI GAGCTC 1 cut(s) 67
EcoT22I ATGCAT 1 cut(s) 369
EcoT38I GRGCYC 1 cut(s) 69
FaeI CATG 4 cut(s) 97, 154, 250, 317
FaiI YATR 4 cut(s) 95, 152, 248, 315
FatI CATG 4 cut(s) 93, 150, 246, 313
Fnu4HI GCNGC 1 cut(s) 108
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 108
FspBI CTAG 1 cut(s) 266
GluI GCNGC 1 cut(s) 108
Hin1II CATG 4 cut(s) 97, 154, 250, 317
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 3 cut(s) 5, 20, 59
HphI GGTGA 1 cut(s) 317
Hpy188I TCNGA 5 cut(s) 14, 64, 115, 278, 292
Hpy188III TCNNGA 5 cut(s) 41, 94, 129, 151, 203
HpyAV CCTTC 1 cut(s) 338
HpyCH4III ACNGT 1 cut(s) 47
HpyCH4V TGCA 5 cut(s) 80, 102, 110, 361, 367
HpyF3I CTNAG 1 cut(s) 63
Hsp92II CATG 4 cut(s) 97, 154, 250, 317
Kzo9I GATC 4 cut(s) 37, 153, 287, 351
LpnPI CCDG 2 cut(s) 54, 182
Lsp1109I GCAGC 1 cut(s) 94
LweI GCATC 3 cut(s) 119, 208, 354
MaeI CTAG 1 cut(s) 266
MaeIII GTNAC 1 cut(s) 17
MalI GATC 4 cut(s) 39, 155, 289, 353
MboI GATC 4 cut(s) 37, 153, 287, 351
MboII GAAGA 5 cut(s) 128, 148, 221, 263, 346
MhlI GDGCHC 2 cut(s) 69, 136
MluCI AATT 2 cut(s) 231, 321
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 1 cut(s) 310
Mph1103I ATGCAT 1 cut(s) 369
MseI TTAA 2 cut(s) 144, 370
NdeII GATC 4 cut(s) 37, 153, 287, 351
NlaIII CATG 4 cut(s) 97, 154, 250, 317
NmuCI GTSAC 1 cut(s) 17
NsiI ATGCAT 1 cut(s) 369
PaeR7I CTCGAG 1 cut(s) 129
PagI TCATGA 2 cut(s) 93, 150
PfeI GAWTC 1 cut(s) 59
PkrI GCNGC 1 cut(s) 109
PleI GAGTC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 14
Psp124BI GAGCTC 1 cut(s) 69
SacI GAGCTC 1 cut(s) 69
SaqAI TTAA 2 cut(s) 144, 370
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 4 cut(s) 37, 153, 287, 351
SchI GAGTC 1 cut(s) 14
SduI GDGCHC 2 cut(s) 69, 136
SetI ASST 8 cut(s) 69, 171, 201, 216, 274, 299, 321, 330
SfaNI GCATC 3 cut(s) 119, 208, 354
Sfr274I CTCGAG 1 cut(s) 129
SlaI CTCGAG 1 cut(s) 129
SmlI CTYRAG 1 cut(s) 129
SmoI CTYRAG 1 cut(s) 129
Sse9I AATT 2 cut(s) 231, 321
SspI AATATT 1 cut(s) 282
SspMI CTAG 1 cut(s) 266
SstI GAGCTC 1 cut(s) 69
TaaI ACNGT 1 cut(s) 47
TaqI TCGA 3 cut(s) 36, 130, 258
TasI AATT 2 cut(s) 231, 321
TfiI GAWTC 1 cut(s) 59
Tru1I TTAA 2 cut(s) 144, 370
Tru9I TTAA 2 cut(s) 144, 370
TscAI CASTG 1 cut(s) 87
TseFI GTSAC 1 cut(s) 17
TseI GCWGC 1 cut(s) 107
Tsp45I GTSAC 1 cut(s) 17
TspDTI ATGAA 3 cut(s) 137, 163, 240
TspRI CASTG 1 cut(s) 87
XhoI CTCGAG 1 cut(s) 129
XspI CTAG 1 cut(s) 266
Zsp2I ATGCAT 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.