Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009489

Physical Location & Seq

Genomic Coordinates Forward (+)

25517411 .. 25519653

Gene Structure 2243 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G68080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGTCGGAGAAAGAGCACCCTCGGCTAATTCTACACAATTTCCTGTCGCCGGCAGAATGCAAGGAACTTGAGCTTATACACAAGAGTAGCAGTACAATTGGGTACAGACCAAATGTCTTCTCCACTACTCTCTCTCACCTCATTGCCACTAATTCTCCTCACCTCATCATCCCTTTTGTCTCCATTAGAGAGAGGTTGAAAGAGAAGATAGAGGAAACATTTGGGTGTGAGTATGAGCTTTTTATTGAATTCACAGGTTTGATTAGTTGGTGCAAAGGAGCTAGCATTGGTTGGCATAGTGATGATAACAGATCATATCTAAAACAAAGAGATTTTGCGGCAGTTTGTTACTTGAATAGTTACGAGAAAGATTTCATAGGCGGTCTTTTTCGTTTTCAGAGTGGTGAACCAGTAACCGTTGCTCCATCGGCTGGTGATGTTATCATGTACACAGCTGATGACCGGAATATTCACTCAGTTGATGAGGTAACAGATGGAGAAAGATTGACTCTTGCACTCTGGTTTAGCCGGGACTCATCACATGACGAAGATTCCAAGCTTCTTTCTCGTCTTTCACAATGTACATCACATGAAGTGTGCCTCCCTTTGCCTGCATCCACTAACATGTACTGGTTCTGTCCTCATCAAGATGGTTCTAATCAAAACATAGGTTTTGATGTTTGCGTTGCGAGGTTGCATCTTCTTGGTTTTGATGTACATAGCTTACAAGGCGAAGATCATTCTACGGATGCCTCTGAACAACTTATGGGACCACTACAATTAGCTAAAGGAGGAAAGTTACTCACCCGAAAATTTGCCAACATTCTTCATGCTCTTCAGGTTGTTCAGTTCTACCATTGGAAAGCTTCTGAACTCGTAACTTCTAATGTCGAAAATGACACATTAGAAGAGGTGAAAGCTATGTCCCACTCTCAGTTGGAAACTATCAATGCCCTGAAATCAGTTTTCCTGCTAGATGAGAACCTCGTAGCCACAACTTTTGGATATTCGTGCTCTGGTGAGGATCGAAAGGATTCACTCGACTTGACGGGTATAGCTCTCGCGGTTACCTCTTGGGAAGAGTATAGCTGTAAGTTACTCAAGGAGCTATTATCATCCTTGCCTCAATGGAAAACTTATCAAACTATACACAAAGTGGAATCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006457 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0019511 GO:0019538 GO:0019797 GO:0019798 GO:0031543 GO:0031544 GO:0032963 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0051213 GO:0055114 GO:0061077 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

389

Amino Acids

43.89

Weight (kDa)

5.25

Isoelectric Point (pI)

46.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy_3	PF13640	93 - 175	8.4e-12	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68080 AT1G68080 AT1G68080 AT1G68080 AT1G68080
fragaria_vesca	FvH4_4g33040
malus_domestica	MD16G1013700.v1.1
prunus_persica	Prupe.1G337400_v2.0.a1 Prupe.1G337400_v2.0.a1
pyrus_communis	pycom13g01390 pycom16g01290
rosa_chinensis	RchiOBHm_Chr4g0442081
rosa_laevigata	RLG00000006042
rosa_multiflora	Rmu_sc0002501.1_g000006
rosa_roxburghii	Rroxscaffold_5G00382990
rosa_rugosa	Rorug04G0338700
rosa_samantha	Rh4AG390200 Rh4BG403700 Rh4BG403800 Rh4CG418800 Rh4DG396800
rosa_wichuraiana	Rw4G033720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	431
AccII	CGCG	1 cut(s)	1064
AciI	CCGC	3 cut(s)	338, 381, 1064
AclWI	GGATC	1 cut(s)	1032
AcsI	RAATTY	2 cut(s)	248, 812
AcuI	CTGAAG	1 cut(s)	821
AdeI	CACNNNGTG	1 cut(s)	1156
AfaI	GTAC	6 cut(s)	94, 104, 449, 583, 629, 717
AfiI	CCNNNNNNNGG	2 cut(s)	49, 431
AflIII	ACRYGT	1 cut(s)	624
AgsI	TTSAA	3 cut(s)	199, 248, 355
AhdI	GACNNNNNGTC	1 cut(s)	113
Alw21I	GWGCWC	2 cut(s)	18, 1016
Alw26I	GTCTC	1 cut(s)	184
AlwI	GGATC	1 cut(s)	1032
ApoI	RAATTY	2 cut(s)	248, 812
Asp700I	GAANNNNTTC	2 cut(s)	371, 1033
AspS9I	GGNCC	1 cut(s)	770
AsuC2I	CCSGG	1 cut(s)	530
AsuHPI	GGTGA	7 cut(s)	128, 152, 416, 446, 796, 925, 1031
AsuNHI	GCTAGC	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	770
BbsI	GAAGAC	1 cut(s)	109
Bbv12I	GWGCWC	2 cut(s)	18, 1016
BccI	CCATC	3 cut(s)	433, 488, 644
BcnI	CCSGG	1 cut(s)	530
BcoDI	GTCTC	1 cut(s)	184
BfaI	CTAG	2 cut(s)	282, 974
BisI	GCNGC	1 cut(s)	339
BlsI	GCNGC	1 cut(s)	340
Bme1390I	CCNGG	1 cut(s)	530
Bme18I	GGWCC	1 cut(s)	770
BmeRI	GACNNNNNGTC	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	770
BmiI	GGNNCC	1 cut(s)	771
BmrFI	CCNGG	1 cut(s)	530
BmsI	GCATC	3 cut(s)	623, 706, 739
BmtI	GCTAGC	1 cut(s)	285
BpiI	GAAGAC	1 cut(s)	109
BpuEI	CTTGAG	2 cut(s)	89, 1085
BpuMI	CCSGG	1 cut(s)	530
BsaJI	CCNNGG	1 cut(s)	20
BsaWI	WCCGGW	1 cut(s)	462
BsaXI	ACNNNNNCTCC	4 cut(s)	139, 169, 406, 436
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 431
Bse118I	RCCGGY	1 cut(s)	49
Bse1I	ACTGG	2 cut(s)	410, 635
Bse3DI	GCAATG	1 cut(s)	141
BseDI	CCNNGG	1 cut(s)	20
BseGI	GGATG	4 cut(s)	168, 614, 754, 1115
BseLI	CCNNNNNNNGG	2 cut(s)	49, 431
BseMI	GCAATG	1 cut(s)	141
BseMII	CTCAG	2 cut(s)	489, 947
BseNI	ACTGG	2 cut(s)	410, 635
BseRI	GAGGAG	1 cut(s)	147
Bsh1236I	CGCG	1 cut(s)	1064
BsiHKAI	GWGCWC	2 cut(s)	18, 1016
BsiSI	CCGG	3 cut(s)	50, 463, 529
BslFI	GGGAC	3 cut(s)	545, 783, 910
BslI	CCNNNNNNNGG	2 cut(s)	49, 431
BsmAI	GTCTC	1 cut(s)	184
BsmFI	GGGAC	3 cut(s)	545, 783, 910
BsmI	GAATGC	1 cut(s)	62
Bsp1286I	GDGCHC	2 cut(s)	18, 1016
Bsp1407I	TGTACA	3 cut(s)	447, 581, 715
Bsp143I	GATC	3 cut(s)	311, 736, 1024
BspACI	CCGC	3 cut(s)	338, 381, 1064
BspCNI	CTCAG	2 cut(s)	488, 946
BspFNI	CGCG	1 cut(s)	1064
BspLI	GGNNCC	1 cut(s)	771
BspOI	GCTAGC	1 cut(s)	285
BspPI	GGATC	1 cut(s)	1032
BspQI	GCTCTTC	1 cut(s)	840
BsrDI	GCAATG	1 cut(s)	141
BsrFI	RCCGGY	1 cut(s)	49
BsrGI	TGTACA	3 cut(s)	447, 581, 715
BsrI	ACTGG	2 cut(s)	410, 635
BssAI	RCCGGY	1 cut(s)	49
BssECI	CCNNGG	1 cut(s)	20
BssMI	GATC	3 cut(s)	311, 736, 1024
Bst4CI	ACNGT	1 cut(s)	418
Bst6I	CTCTTC	3 cut(s)	840, 903, 1074
BstAUI	TGTACA	3 cut(s)	447, 581, 715
BstC8I	GCNNGC	3 cut(s)	51, 283, 612
BstDEI	CTNAG	2 cut(s)	475, 933
BstEII	GGTNACC	1 cut(s)	1066
BstF5I	GGATG	4 cut(s)	168, 614, 754, 1115
BstFNI	CGCG	1 cut(s)	1064
BstKTI	GATC	3 cut(s)	314, 739, 1027
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	3 cut(s)	311, 736, 1024
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 428, 729
BstNSI	RCATGY	1 cut(s)	628
BstPI	GGTNACC	1 cut(s)	1066
BstSCI	CCNGG	1 cut(s)	528
BstUI	CGCG	1 cut(s)	1064
BstV2I	GAAGAC	1 cut(s)	109
BtsCI	GGATG	4 cut(s)	168, 614, 754, 1115
Cac8I	GCNNGC	3 cut(s)	51, 283, 612
Cfr10I	RCCGGY	1 cut(s)	49
Cfr13I	GGNCC	1 cut(s)	770
Csp6I	GTAC	6 cut(s)	93, 103, 448, 582, 628, 716
CspCI	CAANNNNNGTGG	2 cut(s)	982, 1017
CviAII	CATG	5 cut(s)	445, 542, 590, 625, 830
CviQI	GTAC	6 cut(s)	93, 103, 448, 582, 628, 716
DdeI	CTNAG	2 cut(s)	475, 933
DpnI	GATC	3 cut(s)	313, 738, 1026
DpnII	GATC	3 cut(s)	311, 736, 1024
DraIII	CACNNNGTG	1 cut(s)	1156
DriI	GACNNNNNGTC	1 cut(s)	113
Eam1104I	CTCTTC	3 cut(s)	840, 903, 1074
Eam1105I	GACNNNNNGTC	1 cut(s)	113
EarI	CTCTTC	3 cut(s)	840, 903, 1074
Eco47I	GGWCC	1 cut(s)	770
Eco57I	CTGAAG	1 cut(s)	821
Eco91I	GGTNACC	1 cut(s)	1066
EcoO65I	GGTNACC	1 cut(s)	1066
EcoRI	GAATTC	1 cut(s)	248
FaeI	CATG	5 cut(s)	448, 545, 593, 628, 833
FaqI	GGGAC	3 cut(s)	545, 783, 910
FatI	CATG	5 cut(s)	444, 541, 589, 624, 829
Fnu4HI	GCNGC	1 cut(s)	339
FokI	GGATG	4 cut(s)	155, 601, 761, 1102
Fsp4HI	GCNGC	1 cut(s)	339
FspBI	CTAG	2 cut(s)	282, 974
GluI	GCNGC	1 cut(s)	339
HapII	CCGG	3 cut(s)	50, 463, 529
Hin1II	CATG	5 cut(s)	448, 545, 593, 628, 833
HindIII	AAGCTT	2 cut(s)	557, 864
HinfI	GANTC	5 cut(s)	508, 533, 551, 1034, 1160
HpaII	CCGG	3 cut(s)	50, 463, 529
HphI	GGTGA	7 cut(s)	128, 152, 416, 446, 796, 925, 1031
Hpy166II	GTNNAC	2 cut(s)	407, 450
Hpy188I	TCNGA	5 cut(s)	7, 399, 757, 871, 1165
Hpy188III	TCNNGA	1 cut(s)	647
Hpy8I	GTNNAC	2 cut(s)	407, 450
HpyCH4III	ACNGT	1 cut(s)	418
HpyCH4V	TGCA	5 cut(s)	60, 273, 515, 614, 697
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 428, 729
HpyF3I	CTNAG	2 cut(s)	475, 933
Hsp92II	CATG	5 cut(s)	448, 545, 593, 628, 833
KroI	GCCGGC	1 cut(s)	49
KroNI	GCCGGC	1 cut(s)	51
Kzo9I	GATC	3 cut(s)	311, 736, 1024
LguI	GCTCTTC	1 cut(s)	840
LmnI	GCTCC	3 cut(s)	278, 427, 1105
LweI	GCATC	3 cut(s)	623, 706, 739
MaeI	CTAG	2 cut(s)	282, 974
MaeIII	GTNAC	8 cut(s)	347, 359, 412, 487, 798, 877, 1066, 1095
MalI	GATC	3 cut(s)	313, 738, 1026
MboI	GATC	3 cut(s)	311, 736, 1024
MboII	GAAGA	9 cut(s)	109, 217, 560, 692, 746, 818, 827, 920, 1091
MfeI	CAATTG	1 cut(s)	96
MhlI	GDGCHC	2 cut(s)	18, 1016
MluCI	AATT	7 cut(s)	27, 37, 96, 151, 248, 779, 812
MlyI	GAGTC	2 cut(s)	502, 527
MmeI	TCCRAC	1 cut(s)	918
MroNI	GCCGGC	1 cut(s)	49
MroXI	GAANNNNTTC	2 cut(s)	371, 1033
MslI	CAYNNNNRTG	4 cut(s)	223, 300, 623, 648
MspA1I	CMGCKG	1 cut(s)	455
MspI	CCGG	3 cut(s)	50, 463, 529
MspR9I	CCNGG	1 cut(s)	530
MunI	CAATTG	1 cut(s)	96
Mva1269I	GAATGC	1 cut(s)	62
MvnI	CGCG	1 cut(s)	1064
MwoI	GCNNNNNNNGC	3 cut(s)	22, 428, 729
NaeI	GCCGGC	1 cut(s)	51
NciI	CCSGG	1 cut(s)	530
NdeII	GATC	3 cut(s)	311, 736, 1024
NgoMIV	GCCGGC	1 cut(s)	49
NheI	GCTAGC	1 cut(s)	281
NlaIII	CATG	5 cut(s)	448, 545, 593, 628, 833
NlaIV	GGNNCC	1 cut(s)	771
NspI	RCATGY	1 cut(s)	628
PciI	ACATGT	1 cut(s)	624
PciSI	GCTCTTC	1 cut(s)	840
PctI	GAATGC	1 cut(s)	62
PdiI	GCCGGC	1 cut(s)	51
PdmI	GAANNNNTTC	2 cut(s)	371, 1033
PfeI	GAWTC	3 cut(s)	551, 1034, 1160
PflMI	CCANNNNNTGG	1 cut(s)	431
PkrI	GCNGC	1 cut(s)	340
PleI	GAGTC	2 cut(s)	502, 527
PpsI	GAGTC	2 cut(s)	502, 527
PscI	ACATGT	1 cut(s)	624
PspEI	GGTNACC	1 cut(s)	1066
PspN4I	GGNNCC	1 cut(s)	771
PspPI	GGNCC	1 cut(s)	770
PvuII	CAGCTG	1 cut(s)	455
RsaI	GTAC	6 cut(s)	94, 104, 449, 583, 629, 717
RsaNI	GTAC	6 cut(s)	93, 103, 448, 582, 628, 716
RseI	CAYNNNNRTG	4 cut(s)	223, 300, 623, 648
SapI	GCTCTTC	1 cut(s)	840
SatI	GCNGC	1 cut(s)	339
Sau3AI	GATC	3 cut(s)	311, 736, 1024
Sau96I	GGNCC	1 cut(s)	770
SchI	GAGTC	2 cut(s)	502, 527
ScrFI	CCNGG	1 cut(s)	530
SduI	GDGCHC	2 cut(s)	18, 1016
SfaNI	GCATC	3 cut(s)	623, 706, 739
SinI	GGWCC	1 cut(s)	770
SmiMI	CAYNNNNRTG	4 cut(s)	223, 300, 623, 648
SmlI	CTYRAG	2 cut(s)	68, 1100
SmoI	CTYRAG	2 cut(s)	68, 1100
Sse9I	AATT	7 cut(s)	27, 37, 96, 151, 248, 779, 812
SsiI	CCGC	3 cut(s)	338, 381, 1064
SspI	AATATT	1 cut(s)	469
SspMI	CTAG	2 cut(s)	282, 974
StyD4I	CCNGG	1 cut(s)	528
TaaI	ACNGT	1 cut(s)	418
TaqI	TCGA	3 cut(s)	891, 1027, 1041
TasI	AATT	7 cut(s)	27, 37, 96, 151, 248, 779, 812
TatI	WGTACW	5 cut(s)	92, 447, 581, 627, 715
TauI	GCSGC	1 cut(s)	341
TfiI	GAWTC	3 cut(s)	551, 1034, 1160
TspDTI	ATGAA	3 cut(s)	364, 606, 818
TspGWI	ACGGA	1 cut(s)	761
Van91I	CCANNNNNTGG	1 cut(s)	431
VpaK11BI	GGWCC	1 cut(s)	770
XapI	RAATTY	2 cut(s)	248, 812
XceI	RCATGY	1 cut(s)	628
XmnI	GAANNNNTTC	2 cut(s)	371, 1033
XspI	CTAG	2 cut(s)	282, 974

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.