Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0009489

Physical Location & Seq

Genomic Coordinates Reverse (-)

891625 .. 892570

Gene Structure 946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g01390.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGCGTTTCGGGAACCCCGAAACCCTACGTTTAATTATTCAGTTAATTTTCGTAGAAGATGACGCACCTGTAATACATCTAATCGGTTTCAAGAGTATATTAGTCTTTTCAGCTGACAGCCACAACATCCTTTTTTCCTTGGTGGGTCTGATTTGCTGTCTGATATCATTTGGCAGACAACTGATGGCGAAAGACACGCTGGCATTATGGTTCAGTCGTGATAGTCTGCTGCATGATAATGTTCATAAATTACGTCTACCTTTGCCAGCATCTAGTAATATGTACTGGTTTTCACCTGACCAAACTTCTTCTGATCACCAGTTGGGTTTTGGTATATGCCAGGCAAGACTGCATTTTCTTGGATATGATCTACTTGTCCGTCAATACAAGAGCCACTGTTACAACATTGCCGAGTTAACGATGGAGCCACTGCGATTATCATACCAATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006457 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0019511 GO:0019538 GO:0019797 GO:0019798 GO:0031543 GO:0031544 GO:0032963 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0051213 GO:0055114 GO:0061077 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

151

Amino Acids

17.23

Weight (kDa)

6.63

Isoelectric Point (pI)

45.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68080 AT1G68080 AT1G68080 AT1G68080 AT1G68080
fragaria_vesca	FvH4_4g33040
malus_domestica	MD16G1013700.v1.1
prunus_persica	Prupe.1G337400_v2.0.a1 Prupe.1G337400_v2.0.a1
pyrus_communis	pycom13g01390 pycom16g01290
rosa_chinensis	RchiOBHm_Chr4g0442081
rosa_laevigata	RLG00000006042
rosa_multiflora	Rmu_sc0002501.1_g000006
rosa_roxburghii	Rroxscaffold_5G00382990
rosa_rugosa	Rorug04G0338700
rosa_samantha	Rh4AG390200 Rh4BG403700 Rh4BG403800 Rh4CG418800 Rh4DG396800
rosa_wichuraiana	Rw4G033720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	256
AfaI	GTAC	1 cut(s)	284
AgsI	TTSAA	1 cut(s)	91
AjnI	CCWGG	1 cut(s)	339
AluBI	AGCT	1 cut(s)	113
AluI	AGCT	1 cut(s)	113
ApeKI	GCWGC	1 cut(s)	229
AsuHPI	GGTGA	2 cut(s)	285, 308
BbvI	GCAGC	1 cut(s)	216
BccI	CCATC	2 cut(s)	178, 415
BciT130I	CCWGG	1 cut(s)	341
BclI	TGATCA	1 cut(s)	313
BfaI	CTAG	1 cut(s)	273
BisI	GCNGC	1 cut(s)	230
BlsI	GCNGC	1 cut(s)	231
Bme1390I	CCNGG	1 cut(s)	341
BmiI	GGNNCC	2 cut(s)	14, 426
BmrFI	CCNGG	1 cut(s)	341
BmsI	GCATC	1 cut(s)	278
BsaJI	CCNNGG	1 cut(s)	138
Bse1I	ACTGG	2 cut(s)	290, 319
Bse3DI	GCAATG	1 cut(s)	405
BseBI	CCWGG	1 cut(s)	341
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	1 cut(s)	126
BseMI	GCAATG	1 cut(s)	405
BseNI	ACTGG	2 cut(s)	290, 319
BseXI	GCAGC	1 cut(s)	216
Bsp143I	GATC	2 cut(s)	313, 367
BspLI	GGNNCC	2 cut(s)	14, 426
BsrDI	GCAATG	1 cut(s)	405
BsrI	ACTGG	2 cut(s)	290, 319
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	2 cut(s)	313, 367
BssT1I	CCWWGG	1 cut(s)	138
Bst2UI	CCWGG	1 cut(s)	341
Bst4CI	ACNGT	1 cut(s)	398
BstC8I	GCNNGC	2 cut(s)	201, 267
BstF5I	GGATG	1 cut(s)	126
BstKTI	GATC	2 cut(s)	316, 370
BstMBI	GATC	2 cut(s)	313, 367
BstNI	CCWGG	1 cut(s)	341
BstSCI	CCNGG	1 cut(s)	339
BstV1I	GCAGC	1 cut(s)	216
BtsCI	GGATG	1 cut(s)	126
BtsI	GCAGTG	1 cut(s)	428
BtsIMutI	CAGTG	2 cut(s)	394, 428
Cac8I	GCNNGC	2 cut(s)	201, 267
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	283
CviAII	CATG	1 cut(s)	233
CviJI	RGCY	4 cut(s)	113, 120, 393, 427
CviKI_1	RGCY	4 cut(s)	113, 120, 393, 427
CviQI	GTAC	1 cut(s)	283
DpnI	GATC	2 cut(s)	315, 369
DpnII	GATC	2 cut(s)	313, 367
Eco130I	CCWWGG	1 cut(s)	138
Eco32I	GATATC	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	339
EcoRV	GATATC	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	1 cut(s)	236
FaiI	YATR	9 cut(s)	98, 208, 234, 246, 281, 335, 337, 366, 442
FatI	CATG	1 cut(s)	232
FbaI	TGATCA	1 cut(s)	313
FblI	GTMKAC	1 cut(s)	256
Fnu4HI	GCNGC	1 cut(s)	230
FokI	GGATG	1 cut(s)	113
Fsp4HI	GCNGC	1 cut(s)	230
FspBI	CTAG	1 cut(s)	273
GluI	GCNGC	1 cut(s)	230
HgaI	GACGC	1 cut(s)	71
Hin1II	CATG	1 cut(s)	236
HincII	GTYRAC	1 cut(s)	417
HindII	GTYRAC	1 cut(s)	417
HpaI	GTTAAC	1 cut(s)	417
HphI	GGTGA	2 cut(s)	285, 308
Hpy166II	GTNNAC	2 cut(s)	257, 417
Hpy188I	TCNGA	3 cut(s)	150, 162, 313
Hpy188III	TCNNGA	3 cut(s)	10, 91, 218
Hpy8I	GTNNAC	2 cut(s)	257, 417
HpyCH4III	ACNGT	1 cut(s)	398
HpyCH4IV	ACGT	2 cut(s)	28, 253
HpyCH4V	TGCA	2 cut(s)	232, 352
HpySE526I	ACGT	2 cut(s)	28, 253
Hsp92II	CATG	1 cut(s)	236
Ksp22I	TGATCA	1 cut(s)	313
KspAI	GTTAAC	1 cut(s)	417
Kzo9I	GATC	2 cut(s)	313, 367
LmnI	GCTCC	1 cut(s)	424
LpnPI	CCDG	8 cut(s)	81, 185, 271, 279, 309, 326, 332, 353
Lsp1109I	GCAGC	1 cut(s)	216
LweI	GCATC	1 cut(s)	278
MaeI	CTAG	1 cut(s)	273
MaeII	ACGT	2 cut(s)	28, 253
MaeIII	GTNAC	1 cut(s)	398
MalI	GATC	2 cut(s)	315, 369
MboI	GATC	2 cut(s)	313, 367
MboII	GAAGA	2 cut(s)	68, 300
MluCI	AATT	3 cut(s)	33, 45, 248
MseI	TTAA	3 cut(s)	32, 44, 416
MslI	CAYNNNNRTG	2 cut(s)	237, 445
MspA1I	CMGCKG	1 cut(s)	113
MspR9I	CCNGG	1 cut(s)	341
MvaI	CCWGG	1 cut(s)	341
NdeII	GATC	2 cut(s)	313, 367
NlaIII	CATG	1 cut(s)	236
NlaIV	GGNNCC	2 cut(s)	14, 426
NmeAIII	GCCGAG	1 cut(s)	436
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PkrI	GCNGC	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	339
PspGI	CCWGG	1 cut(s)	339
PspN4I	GGNNCC	2 cut(s)	14, 426
PvuII	CAGCTG	1 cut(s)	113
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
RseI	CAYNNNNRTG	2 cut(s)	237, 445
SaqAI	TTAA	3 cut(s)	32, 44, 416
SatI	GCNGC	1 cut(s)	230
Sau3AI	GATC	2 cut(s)	313, 367
ScrFI	CCNGG	1 cut(s)	341
SetI	ASST	6 cut(s)	31, 70, 115, 256, 262, 298
SfaNI	GCATC	1 cut(s)	278
SmiMI	CAYNNNNRTG	2 cut(s)	237, 445
Sse9I	AATT	3 cut(s)	33, 45, 248
SspMI	CTAG	1 cut(s)	273
StyD4I	CCNGG	1 cut(s)	339
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	1 cut(s)	398
TaiI	ACGT	2 cut(s)	31, 256
TasI	AATT	3 cut(s)	33, 45, 248
TatI	WGTACW	1 cut(s)	282
Tru1I	TTAA	3 cut(s)	32, 44, 416
Tru9I	TTAA	3 cut(s)	32, 44, 416
TscAI	CASTG	2 cut(s)	401, 435
TseI	GCWGC	1 cut(s)	229
TspDTI	ATGAA	1 cut(s)	233
TspGWI	ACGGA	1 cut(s)	368
TspRI	CASTG	2 cut(s)	401, 435
XcmI	CCANNNNNNNNNTGG	1 cut(s)	326
XmiI	GTMKAC	1 cut(s)	256
XspI	CTAG	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.