Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009489

Physical Location & Seq

Genomic Coordinates Reverse (-)

31403140 .. 31405853

Gene Structure 2714 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g33040.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGACATACCCAGAAGATGAAGAACATCCTCGGCTTCTTCTCCACAACTTCCTTTCTGCTCAGGAATGCAAGGAACTGGAATTTATACACAAAAGCAATTGCACTGTGGGTTACAGACCCAATGTGTTCTCAACCACACTTTCACATCTCATTGCCACCAATTGTGCTCATCTCATCATGCCCTTCGTCCCCATCAGAGAGAGGTTGAAGGAGAAGGTAGAGGAATTCTTTGGCTGCGAGTATGAACTCTTTATTGAATTCACCGGTTTGATCAGCTGGACTAGAGGAGCAAGCATTGGTTGGCATAGTGATGACAACAGGGACTATCTCAAACAGCGCGACTTTGCGGCAGTTTGTTATTTGAACAATTACGGGGATGATTTCAAAGGCGGACTTTTTCACTTCCAGATTGGAGATCTAGCAACTATTGTTCCATCAAGTGGGGATGTTGTGATATACACAGCTGACAACCGCAACATTCATGCTGTTAATGAGGTTATTGATGGGGAAAGACTCACAATGGCATTATGGTTCAGTCGTGATGCTGCCCATGATGAAGATGCTAAACTAATCTCCCTTCTCTCACAGACTCCATTACGCAATAATGGTCCCGAATTATTGCTACCTTTGCCAGCATCAAGTAATATGTACTGGTTTTCACCAGAACATGCTTCGTCCTATGAGTTTGGATTTGATATATGCTGTGCAAGACTGCATGTTCTTGGATATGATGTAGTTTACTCTGAAGAGAAGATCTCCTGTTCAAATGTTTCTGAGTTACTGATTGAGAGATTGCGATTAGCAAGAGCAGATGAGTTGTTTGACTATGAGTTCCTCAACATCTTGCATGCACTTCAGGTAGTGCAATTCTACTGTTGGAAAGCTTCTGATCTGAAATCTACTGAAGTCGAAAATATTATTAAGGTGGTACCCTTATTGCCATCACAAAGGGAGAAATCTCTCTGCCTCAAATCTATATCTCTGAAGGATCTTCATCTAGCAGAGTCTATATTTTCTGCTGAGAGTGCAAAACACTGTTATTGGGCCCATCTTACAGTTGCAGTCGCTATGTGGGGAGATTATGCACACAGGCTACATAAAGAACTGGTAATGTGCTTACCTCACTGGAAAACACATCAATCTATATTTCAAGTATCATTTGATGATAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006457 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0019511 GO:0019538 GO:0019797 GO:0019798 GO:0031543 GO:0031544 GO:0032963 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0051213 GO:0055114 GO:0061077 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

391

Amino Acids

44.84

Weight (kDa)

5.41

Isoelectric Point (pI)

39.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy_3	PF13640	94 - 178	2.9e-11	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68080 AT1G68080 AT1G68080 AT1G68080 AT1G68080
fragaria_vesca	FvH4_4g33040
malus_domestica	MD16G1013700.v1.1
prunus_persica	Prupe.1G337400_v2.0.a1 Prupe.1G337400_v2.0.a1
pyrus_communis	pycom13g01390 pycom16g01290
rosa_chinensis	RchiOBHm_Chr4g0442081
rosa_laevigata	RLG00000006042
rosa_multiflora	Rmu_sc0002501.1_g000006
rosa_roxburghii	Rroxscaffold_5G00382990
rosa_rugosa	Rorug04G0338700
rosa_samantha	Rh4AG390200 Rh4BG403700 Rh4BG403800 Rh4CG418800 Rh4DG396800
rosa_wichuraiana	Rw4G033720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	928
AccB1I	GGYRCC	1 cut(s)	928
AccB7I	CCANNNNNTGG	1 cut(s)	440
AccII	CGCG	1 cut(s)	339
AciI	CCGC	3 cut(s)	347, 390, 472
AclWI	GGATC	1 cut(s)	996
AcsI	RAATTY	3 cut(s)	80, 224, 257
AcuI	CTGAAG	4 cut(s)	765, 839, 924, 1004
AfaI	GTAC	2 cut(s)	650, 930
AfiI	CCNNNNNNNGG	1 cut(s)	440
AgeI	ACCGGT	1 cut(s)	263
AgsI	TTSAA	6 cut(s)	208, 257, 364, 385, 765, 1151
AluBI	AGCT	3 cut(s)	276, 464, 884
AluI	AGCT	3 cut(s)	276, 464, 884
Alw21I	GWGCWC	1 cut(s)	169
AlwI	GGATC	1 cut(s)	996
AoxI	GGCC	1 cut(s)	1044
ApaI	GGGCCC	1 cut(s)	1048
ApeKI	GCWGC	2 cut(s)	234, 545
ApoI	RAATTY	3 cut(s)	80, 224, 257
AsiGI	ACCGGT	1 cut(s)	263
Asp718I	GGTACC	1 cut(s)	928
AspLEI	GCGC	1 cut(s)	339
AspS9I	GGNCC	3 cut(s)	608, 1044, 1045
AsuHPI	GGTGA	2 cut(s)	253, 651
AvaII	GGWCC	1 cut(s)	608
BaeGI	GKGCMC	1 cut(s)	1048
BanI	GGYRCC	1 cut(s)	928
BanII	GRGCYC	1 cut(s)	1048
Bbv12I	GWGCWC	1 cut(s)	169
BbvI	GCAGC	2 cut(s)	221, 532
BccI	CCATC	5 cut(s)	200, 442, 497, 949, 1056
BclI	TGATCA	1 cut(s)	270
BfaI	CTAG	3 cut(s)	282, 419, 998
BglII	AGATCT	2 cut(s)	415, 753
BisI	GCNGC	3 cut(s)	235, 348, 546
BlsI	GCNGC	3 cut(s)	236, 349, 547
Bme18I	GGWCC	1 cut(s)	608
BmgT120I	GGNCC	3 cut(s)	608, 1044, 1045
BmiI	GGNNCC	3 cut(s)	610, 930, 1046
BmsI	GCATC	3 cut(s)	532, 550, 644
BplI	GAGNNNNNCTC	2 cut(s)	740, 772
Bpu10I	CCTNAGC	1 cut(s)	60
BsaBI	GATNNNNATC	1 cut(s)	993
BsaJI	CCNNGG	1 cut(s)	29
BsaWI	WCCGGW	1 cut(s)	263
Bsc4I	CCNNNNNNNGG	1 cut(s)	440
Bse118I	RCCGGY	1 cut(s)	263
Bse1I	ACTGG	4 cut(s)	81, 656, 1110, 1130
Bse3DI	GCAATG	1 cut(s)	150
Bse8I	GATNNNNATC	1 cut(s)	993
BseDI	CCNNGG	1 cut(s)	29
BseGI	GGATG	3 cut(s)	25, 382, 451
BseJI	GATNNNNATC	1 cut(s)	993
BseLI	CCNNNNNNNGG	1 cut(s)	440
BseMI	GCAATG	1 cut(s)	150
BseMII	CTCAG	3 cut(s)	74, 765, 1011
BseNI	ACTGG	4 cut(s)	81, 656, 1110, 1130
BseRI	GAGGAG	1 cut(s)	300
BseSI	GKGCMC	1 cut(s)	1048
BseXI	GCAGC	2 cut(s)	221, 532
Bsh1236I	CGCG	1 cut(s)	339
BshFI	GGCC	1 cut(s)	1046
BshNI	GGYRCC	1 cut(s)	928
BshTI	ACCGGT	1 cut(s)	263
BsiHKAI	GWGCWC	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	264
BslFI	GGGAC	3 cut(s)	173, 335, 594
BslI	CCNNNNNNNGG	1 cut(s)	440
BsmFI	GGGAC	3 cut(s)	173, 335, 594
BsmI	GAATGC	1 cut(s)	71
BsnI	GGCC	1 cut(s)	1046
Bsp120I	GGGCCC	1 cut(s)	1044
Bsp1286I	GDGCHC	2 cut(s)	169, 1048
Bsp143I	GATC	5 cut(s)	270, 415, 753, 889, 988
BspACI	CCGC	3 cut(s)	347, 390, 472
BspANI	GGCC	1 cut(s)	1046
BspCNI	CTCAG	3 cut(s)	73, 766, 1012
BspFNI	CGCG	1 cut(s)	339
BspLI	GGNNCC	3 cut(s)	610, 930, 1046
BspPI	GGATC	1 cut(s)	996
BspT107I	GGYRCC	1 cut(s)	928
BsrDI	GCAATG	1 cut(s)	150
BsrFI	RCCGGY	1 cut(s)	263
BsrI	ACTGG	4 cut(s)	81, 656, 1110, 1130
BssAI	RCCGGY	1 cut(s)	263
BssECI	CCNNGG	1 cut(s)	29
BssMI	GATC	5 cut(s)	270, 415, 753, 889, 988
Bst4CI	ACNGT	4 cut(s)	106, 875, 1037, 1057
Bst6I	CTCTTC	1 cut(s)	741
BstC8I	GCNNGC	3 cut(s)	292, 633, 849
BstDEI	CTNAG	3 cut(s)	60, 774, 1020
BstF5I	GGATG	3 cut(s)	25, 382, 451
BstFNI	CGCG	1 cut(s)	339
BstHHI	GCGC	1 cut(s)	339
BstKTI	GATC	5 cut(s)	273, 418, 756, 892, 991
BstMBI	GATC	5 cut(s)	270, 415, 753, 889, 988
BstMWI	GCNNNNNNNGC	2 cut(s)	628, 1025
BstNSI	RCATGY	3 cut(s)	671, 719, 851
BstSLI	GKGCMC	1 cut(s)	1048
BstUI	CGCG	1 cut(s)	339
BstV1I	GCAGC	2 cut(s)	221, 532
BstX2I	RGATCY	3 cut(s)	415, 753, 988
BstYI	RGATCY	3 cut(s)	415, 753, 988
BsuRI	GGCC	1 cut(s)	1046
BtsCI	GGATG	3 cut(s)	25, 382, 451
BtsIMutI	CAGTG	3 cut(s)	102, 1033, 1123
Cac8I	GCNNGC	3 cut(s)	292, 633, 849
CfoI	GCGC	1 cut(s)	339
Cfr10I	RCCGGY	1 cut(s)	263
Cfr13I	GGNCC	3 cut(s)	608, 1044, 1045
Csp6I	GTAC	2 cut(s)	649, 929
CspAI	ACCGGT	1 cut(s)	263
CviAII	CATG	6 cut(s)	178, 482, 551, 668, 716, 848
CviJI	RGCY	7 cut(s)	34, 234, 276, 464, 884, 1046, 1093
CviKI_1	RGCY	7 cut(s)	34, 234, 276, 464, 884, 1046, 1093
CviQI	GTAC	2 cut(s)	649, 929
DdeI	CTNAG	3 cut(s)	60, 774, 1020
DpnI	GATC	5 cut(s)	272, 417, 755, 891, 990
DpnII	GATC	5 cut(s)	270, 415, 753, 889, 988
Eam1104I	CTCTTC	1 cut(s)	741
EarI	CTCTTC	1 cut(s)	741
EciI	GGCGGA	1 cut(s)	405
Eco24I	GRGCYC	1 cut(s)	1048
Eco47I	GGWCC	1 cut(s)	608
Eco57I	CTGAAG	4 cut(s)	765, 839, 924, 1004
EcoRI	GAATTC	2 cut(s)	224, 257
EcoT38I	GRGCYC	1 cut(s)	1048
FaeI	CATG	6 cut(s)	181, 485, 554, 671, 719, 851
FalI	AAGNNNNNCTT	2 cut(s)	378, 410
FaqI	GGGAC	3 cut(s)	173, 335, 594
FatI	CATG	6 cut(s)	177, 481, 550, 667, 715, 847
FbaI	TGATCA	1 cut(s)	270
Fnu4HI	GCNGC	3 cut(s)	235, 348, 546
FokI	GGATG	3 cut(s)	12, 389, 458
FriOI	GRGCYC	1 cut(s)	1048
Fsp4HI	GCNGC	3 cut(s)	235, 348, 546
FspBI	CTAG	3 cut(s)	282, 419, 998
GlaI	GCGC	1 cut(s)	338
GluI	GCNGC	3 cut(s)	235, 348, 546
HaeIII	GGCC	1 cut(s)	1046
HapII	CCGG	1 cut(s)	264
HhaI	GCGC	1 cut(s)	339
Hin1II	CATG	6 cut(s)	181, 485, 554, 671, 719, 851
Hin6I	GCGC	1 cut(s)	337
HinP1I	GCGC	1 cut(s)	337
HindIII	AAGCTT	1 cut(s)	882
HinfI	GANTC	3 cut(s)	513, 589, 1004
HpaII	CCGG	1 cut(s)	264
HphI	GGTGA	2 cut(s)	253, 651
Hpy166II	GTNNAC	1 cut(s)	739
Hpy188I	TCNGA	6 cut(s)	197, 745, 775, 889, 894, 984
Hpy188III	TCNNGA	4 cut(s)	62, 406, 539, 611
Hpy8I	GTNNAC	1 cut(s)	739
HpyAV	CCTTC	5 cut(s)	193, 202, 208, 587, 979
HpyCH4III	ACNGT	4 cut(s)	106, 875, 1037, 1057
HpyF10VI	GCNNNNNNNGC	2 cut(s)	628, 1025
HpyF3I	CTNAG	3 cut(s)	60, 774, 1020
Hsp92II	CATG	6 cut(s)	181, 485, 554, 671, 719, 851
HspAI	GCGC	1 cut(s)	337
KpnI	GGTACC	1 cut(s)	932
Ksp22I	TGATCA	1 cut(s)	270
Kzo9I	GATC	5 cut(s)	270, 415, 753, 889, 988
LmnI	GCTCC	1 cut(s)	287
Lsp1109I	GCAGC	2 cut(s)	221, 532
LweI	GCATC	3 cut(s)	532, 550, 644
MaeI	CTAG	3 cut(s)	282, 419, 998
MaeIII	GTNAC	2 cut(s)	110, 777
MalI	GATC	5 cut(s)	272, 417, 755, 891, 990
MboI	GATC	5 cut(s)	270, 415, 753, 889, 988
MboII	GAAGA	7 cut(s)	26, 29, 32, 569, 758, 763, 983
MfeI	CAATTG	2 cut(s)	97, 160
MflI	RGATCY	3 cut(s)	415, 753, 988
MhlI	GDGCHC	2 cut(s)	169, 1048
MluCI	AATT	8 cut(s)	80, 97, 160, 224, 257, 367, 614, 866
MlyI	GAGTC	3 cut(s)	507, 583, 1013
MmeI	TCCRAC	1 cut(s)	857
MnlI	CCTC	8 cut(s)	39, 195, 214, 278, 487, 845, 977, 1131
MseI	TTAA	2 cut(s)	489, 921
MslI	CAYNNNNRTG	1 cut(s)	309
MspA1I	CMGCKG	2 cut(s)	276, 464
MspI	CCGG	1 cut(s)	264
MunI	CAATTG	2 cut(s)	97, 160
Mva1269I	GAATGC	1 cut(s)	71
MvnI	CGCG	1 cut(s)	339
MwoI	GCNNNNNNNGC	2 cut(s)	628, 1025
NdeII	GATC	5 cut(s)	270, 415, 753, 889, 988
NlaIII	CATG	6 cut(s)	181, 485, 554, 671, 719, 851
NlaIV	GGNNCC	3 cut(s)	610, 930, 1046
NmeAIII	GCCGAG	1 cut(s)	10
NspI	RCATGY	3 cut(s)	671, 719, 851
PaeI	GCATGC	1 cut(s)	851
PctI	GAATGC	1 cut(s)	71
PflMI	CCANNNNNTGG	1 cut(s)	440
PinAI	ACCGGT	1 cut(s)	263
PkrI	GCNGC	3 cut(s)	236, 349, 547
PleI	GAGTC	3 cut(s)	507, 583, 1012
PpsI	GAGTC	3 cut(s)	507, 583, 1012
PspN4I	GGNNCC	3 cut(s)	610, 930, 1046
PspOMI	GGGCCC	1 cut(s)	1044
PspPI	GGNCC	3 cut(s)	608, 1044, 1045
PsuI	RGATCY	3 cut(s)	415, 753, 988
PvuII	CAGCTG	2 cut(s)	276, 464
RsaI	GTAC	2 cut(s)	650, 930
RsaNI	GTAC	2 cut(s)	649, 929
RseI	CAYNNNNRTG	1 cut(s)	309
SaqAI	TTAA	2 cut(s)	489, 921
SatI	GCNGC	3 cut(s)	235, 348, 546
Sau3AI	GATC	5 cut(s)	270, 415, 753, 889, 988
Sau96I	GGNCC	3 cut(s)	608, 1044, 1045
SchI	GAGTC	3 cut(s)	507, 583, 1013
SduI	GDGCHC	2 cut(s)	169, 1048
SfaNI	GCATC	3 cut(s)	532, 550, 644
SinI	GGWCC	1 cut(s)	608
SmiMI	CAYNNNNRTG	1 cut(s)	309
SphI	GCATGC	1 cut(s)	851
Sse9I	AATT	8 cut(s)	80, 97, 160, 224, 257, 367, 614, 866
SsiI	CCGC	3 cut(s)	347, 390, 472
SspI	AATATT	1 cut(s)	916
SspMI	CTAG	3 cut(s)	282, 419, 998
TaaI	ACNGT	4 cut(s)	106, 875, 1037, 1057
TaqI	TCGA	1 cut(s)	909
TasI	AATT	8 cut(s)	80, 97, 160, 224, 257, 367, 614, 866
TatI	WGTACW	1 cut(s)	648
TauI	GCSGC	1 cut(s)	350
Tru1I	TTAA	2 cut(s)	489, 921
Tru9I	TTAA	2 cut(s)	489, 921
TscAI	CASTG	3 cut(s)	109, 1040, 1130
TseI	GCWGC	2 cut(s)	234, 545
TspDTI	ATGAA	5 cut(s)	33, 258, 470, 570, 983
TspRI	CASTG	3 cut(s)	109, 1040, 1130
Van91I	CCANNNNNTGG	1 cut(s)	440
VpaK11BI	GGWCC	1 cut(s)	608
XapI	RAATTY	3 cut(s)	80, 224, 257
XceI	RCATGY	3 cut(s)	671, 719, 851
XspI	CTAG	3 cut(s)	282, 419, 998

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.