Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0009489

Physical Location & Seq

Genomic Coordinates Reverse (-)

1056932 .. 1059363

Gene Structure 2432 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1013700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGGAGAGGCAGAAGAAGGCCGTCGCCGCCGCCTCATCCTCCACAACTTCCTTTCCCTCCAAGAATGCAAGGAGCTGGAGTTCATCCACAAGAGCAACTGCACGGTTGGCTACAGACCCAATGTTTTCTCCACCACTCTCTCGCACCTCATCGCCACCAATTCCGCCCACCTCATCATCCCCTTCGTCCCCGTCAGAGAGAGATTGAAGGAGAAGGTTGAGGAGTTCTTTGGGTGCCAGTTTGAACTCTTCGTTGAATTCACCGGTTTGATCAGCTGGAGTAGAGGAGCAAGCATTGGGTGGCATAGTGATGACAACCGGCCCTATCTCAAACAGCGTCACTTTGCGGCAGTCTGTTATTTAAACAATTACGTGGATGATTTCAAAGGTGGACTTTTTCACTTCCAGGATGGCGATCCAGAAACTATTGTTCCATCATGTGGGGATGTTGTGATATACACAGCTGACAGCCGCAACACTCACTCCGTTGATGAGATTACTGATGGTGAAAGACTCACACTGGCATTATGGTTCAGTCGTGATGCTACCTATGATGAGGATGCTAAACTTATATCCCTTCTCTCACAGAGTCTGTTGCATGATAATGTTCCTAAATTGTGTCTACCTATGCCAGCATCTAGTAATATGTACTGGTTTTCACCCGATCAAGCTTCTTCTGATCACCAGTTGGGTTTTGATATATGCTGGGCAAGACTGCATGTTCTTGGATATGATCTACTTTTCCGTCAAGACAAGAGCCACTGTTCAAATATTGCCGAGTTACTGATGGAGCCACTGCGATTAGCAAGGGGAGATGAGTTGTTTGACCACGAGTTCATCAACATCTTGCATGCACTGCAGGTTGTGCAATTCCACTGTTGGAAAGCTCCTGGTCTCGAATCTGTCAAATTAGAAACGAGCAAGGTGGTACGCTTGTCCCAATCACAGAGGGAAATAATTCTTCATCTTAAATCTTCATTTGTGAAAGATCTTCATCTGCTAGAGTCCGTTTTCAGCAACGTGGCATGTGCTGAGAGTTCGCAAAATTCCTTTAACTGGGCTGATTTTTCAGTTGCAGTCACTCTGTGGGAAGATTATTCCCGCAAGTTACATAAAGAACTGGTAATGAGCTTTCCACACTGGAGAACGCATCATTCTATATTTTACGTATCATTCGATGAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006457 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0019511 GO:0019538 GO:0019797 GO:0019798 GO:0031543 GO:0031544 GO:0032963 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0051213 GO:0055114 GO:0061077 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

396

Amino Acids

45.61

Weight (kDa)

5.75

Isoelectric Point (pI)

49.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy_3	PF13640	94 - 178	2.3e-11	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68080 AT1G68080 AT1G68080 AT1G68080 AT1G68080
fragaria_vesca	FvH4_4g33040
malus_domestica	MD16G1013700.v1.1
prunus_persica	Prupe.1G337400_v2.0.a1 Prupe.1G337400_v2.0.a1
pyrus_communis	pycom13g01390 pycom16g01290
rosa_chinensis	RchiOBHm_Chr4g0442081
rosa_laevigata	RLG00000006042
rosa_multiflora	Rmu_sc0002501.1_g000006
rosa_roxburghii	Rroxscaffold_5G00382990
rosa_rugosa	Rorug04G0338700
rosa_samantha	Rh4AG390200 Rh4BG403700 Rh4BG403800 Rh4CG418800 Rh4DG396800
rosa_wichuraiana	Rw4G033720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	850
AccB1I	GGYRCC	1 cut(s)	234
AccB7I	CCANNNNNTGG	1 cut(s)	440
AccI	GTMKAC	1 cut(s)	622
AciI	CCGC	6 cut(s)	28, 31, 165, 347, 472, 1102
AclWI	GGATC	1 cut(s)	410
AcsI	RAATTY	2 cut(s)	257, 1045
AdeI	CACNNNGTG	1 cut(s)	1086
AfaI	GTAC	2 cut(s)	650, 930
AfiI	CCNNNNNNNGG	2 cut(s)	440, 1056
AgeI	ACCGGT	1 cut(s)	263
AgsI	TTSAA	5 cut(s)	208, 245, 257, 385, 768
AjnI	CCWGG	2 cut(s)	405, 889
AloI	GAACNNNNNNTCC	2 cut(s)	65, 97
AluBI	AGCT	6 cut(s)	76, 276, 464, 671, 887, 1131
AluI	AGCT	6 cut(s)	76, 276, 464, 671, 887, 1131
Alw26I	GTCTC	1 cut(s)	899
AlwI	GGATC	1 cut(s)	410
AlwNI	CAGNNNCTG	1 cut(s)	592
AoxI	GGCC	2 cut(s)	19, 320
ApoI	RAATTY	2 cut(s)	257, 1045
AsiGI	ACCGGT	1 cut(s)	263
Asp700I	GAANNNNTTC	1 cut(s)	957
AspS9I	GGNCC	1 cut(s)	321
AsuHPI	GGTGA	4 cut(s)	253, 518, 651, 674
BaeI	ACNNNNGTAYC	2 cut(s)	920, 953
BanI	GGYRCC	1 cut(s)	234
BauI	CACGAG	1 cut(s)	830
BccI	CCATC	4 cut(s)	404, 442, 497, 781
BceAI	ACGGC	1 cut(s)	6
BciT130I	CCWGG	2 cut(s)	407, 891
BclI	TGATCA	2 cut(s)	270, 679
BcoDI	GTCTC	1 cut(s)	899
BfaI	CTAG	2 cut(s)	639, 1001
BfmI	CTRYAG	2 cut(s)	112, 857
BfuAI	ACCTGC	1 cut(s)	850
BglII	AGATCT	1 cut(s)	988
BisI	GCNGC	4 cut(s)	28, 31, 348, 472
BlsI	GCNGC	4 cut(s)	29, 32, 349, 473
Bme1390I	CCNGG	2 cut(s)	407, 891
BmgT120I	GGNCC	1 cut(s)	321
BmiI	GGNNCC	2 cut(s)	236, 792
BmrFI	CCNGG	2 cut(s)	407, 891
BmrI	ACTGGG	1 cut(s)	1066
BmsI	GCATC	4 cut(s)	532, 550, 644, 1159
BmuI	ACTGGG	1 cut(s)	1066
BpmI	CTGGAG	3 cut(s)	98, 298, 1162
BsaAI	YACGTR	2 cut(s)	373, 1168
BsaBI	GATNNNNATC	2 cut(s)	414, 993
BsaI	GGTCTC	1 cut(s)	899
BsaWI	WCCGGW	1 cut(s)	263
BsaXI	ACNNNNNCTCC	4 cut(s)	65, 95, 467, 497
Bsc4I	CCNNNNNNNGG	2 cut(s)	440, 1056
Bse118I	RCCGGY	2 cut(s)	263, 318
Bse1I	ACTGG	7 cut(s)	238, 525, 656, 685, 1061, 1125, 1145
Bse8I	GATNNNNATC	2 cut(s)	414, 993
BseBI	CCWGG	2 cut(s)	407, 891
BseGI	GGATG	7 cut(s)	36, 84, 177, 382, 415, 451, 565
BseJI	GATNNNNATC	2 cut(s)	414, 993
BseLI	CCNNNNNNNGG	2 cut(s)	440, 1056
BseMII	CTCAG	1 cut(s)	1023
BseNI	ACTGG	7 cut(s)	238, 525, 656, 685, 1061, 1125, 1145
BseRI	GAGGAG	2 cut(s)	236, 300
BseYI	CCCAGC	1 cut(s)	705
BsgI	GTGCAG	1 cut(s)	85
BshFI	GGCC	2 cut(s)	21, 322
BshNI	GGYRCC	1 cut(s)	234
BshTI	ACCGGT	1 cut(s)	263
BsiSI	CCGG	2 cut(s)	264, 319
BslFI	GGGAC	2 cut(s)	173, 922
BslI	CCNNNNNNNGG	2 cut(s)	440, 1056
BsmAI	GTCTC	1 cut(s)	899
BsmFI	GGGAC	2 cut(s)	173, 922
BsmI	GAATGC	1 cut(s)	71
BsnI	GGCC	2 cut(s)	21, 322
Bso31I	GGTCTC	1 cut(s)	899
Bsp143I	GATC	6 cut(s)	270, 415, 664, 679, 733, 988
BspACI	CCGC	6 cut(s)	28, 31, 165, 347, 472, 1102
BspANI	GGCC	2 cut(s)	21, 322
BspCNI	CTCAG	1 cut(s)	1024
BspLI	GGNNCC	2 cut(s)	236, 792
BspMAI	CTGCAG	1 cut(s)	861
BspMI	ACCTGC	1 cut(s)	850
BspPI	GGATC	1 cut(s)	410
BspT107I	GGYRCC	1 cut(s)	234
BspTNI	GGTCTC	1 cut(s)	899
BsrFI	RCCGGY	2 cut(s)	263, 318
BsrI	ACTGG	7 cut(s)	238, 525, 656, 685, 1061, 1125, 1145
BssAI	RCCGGY	2 cut(s)	263, 318
BssMI	GATC	6 cut(s)	270, 415, 664, 679, 733, 988
BssSI	CACGAG	1 cut(s)	830
Bst2BI	CACGAG	1 cut(s)	830
Bst2UI	CCWGG	2 cut(s)	407, 891
Bst4CI	ACNGT	3 cut(s)	106, 764, 878
Bst6I	CTCTTC	1 cut(s)	254
BstAPI	GCANNNNNTGC	2 cut(s)	856, 865
BstBAI	YACGTR	2 cut(s)	373, 1168
BstC8I	GCNNGC	3 cut(s)	292, 633, 852
BstDEI	CTNAG	1 cut(s)	1032
BstF5I	GGATG	7 cut(s)	36, 84, 177, 382, 415, 451, 565
BstKTI	GATC	6 cut(s)	273, 418, 667, 682, 736, 991
BstMAI	GTCTC	1 cut(s)	899
BstMBI	GATC	6 cut(s)	270, 415, 664, 679, 733, 988
BstMWI	GCNNNNNNNGC	4 cut(s)	27, 108, 856, 865
BstNI	CCWGG	2 cut(s)	407, 891
BstNSI	RCATGY	3 cut(s)	722, 854, 1029
BstSCI	CCNGG	2 cut(s)	405, 889
BstSFI	CTRYAG	2 cut(s)	112, 857
BstSNI	TACGTA	1 cut(s)	1168
BstX2I	RGATCY	1 cut(s)	988
BstYI	RGATCY	1 cut(s)	988
BsuRI	GGCC	2 cut(s)	21, 322
BtgZI	GCGATG	1 cut(s)	136
BtsCI	GGATG	7 cut(s)	36, 84, 177, 382, 415, 451, 565
BtsI	GCAGTG	2 cut(s)	794, 854
BtsIMutI	CAGTG	6 cut(s)	518, 760, 794, 854, 874, 1138
BveI	ACCTGC	1 cut(s)	850
Cac8I	GCNNGC	3 cut(s)	292, 633, 852
CaiI	CAGNNNCTG	1 cut(s)	592
Cfr10I	RCCGGY	2 cut(s)	263, 318
Cfr13I	GGNCC	1 cut(s)	321
CseI	GACGC	1 cut(s)	326
Csp6I	GTAC	2 cut(s)	649, 929
CspAI	ACCGGT	1 cut(s)	263
CviAII	CATG	5 cut(s)	438, 599, 719, 851, 1026
CviQI	GTAC	2 cut(s)	649, 929
DdeI	CTNAG	1 cut(s)	1032
DpnI	GATC	6 cut(s)	272, 417, 666, 681, 735, 990
DpnII	GATC	6 cut(s)	270, 415, 664, 679, 733, 988
DraI	TTTAAA	1 cut(s)	363
DraIII	CACNNNGTG	1 cut(s)	1086
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
EciI	GGCGGA	1 cut(s)	154
Eco105I	TACGTA	1 cut(s)	1168
Eco31I	GGTCTC	1 cut(s)	899
EcoRI	GAATTC	1 cut(s)	257
EcoRII	CCWGG	2 cut(s)	405, 889
FaeI	CATG	5 cut(s)	441, 602, 722, 854, 1029
FalI	AAGNNNNNCTT	2 cut(s)	378, 410
FaqI	GGGAC	2 cut(s)	173, 922
FatI	CATG	5 cut(s)	437, 598, 718, 850, 1025
FauI	CCCGC	1 cut(s)	1109
FbaI	TGATCA	2 cut(s)	270, 679
FblI	GTMKAC	1 cut(s)	622
Fnu4HI	GCNGC	4 cut(s)	28, 31, 348, 472
FokI	GGATG	7 cut(s)	23, 71, 164, 389, 422, 458, 572
Fsp4HI	GCNGC	4 cut(s)	28, 31, 348, 472
FspBI	CTAG	2 cut(s)	639, 1001
GluI	GCNGC	4 cut(s)	28, 31, 348, 472
GsaI	CCCAGC	1 cut(s)	709
GsuI	CTGGAG	3 cut(s)	98, 298, 1162
HaeIII	GGCC	2 cut(s)	21, 322
HapII	CCGG	2 cut(s)	264, 319
HgaI	GACGC	1 cut(s)	326
Hin1II	CATG	5 cut(s)	441, 602, 722, 854, 1029
HindIII	AAGCTT	1 cut(s)	669
HinfI	GANTC	4 cut(s)	513, 589, 899, 1004
HpaII	CCGG	2 cut(s)	264, 319
HphI	GGTGA	4 cut(s)	253, 518, 651, 674
Hpy166II	GTNNAC	2 cut(s)	392, 623
Hpy188I	TCNGA	2 cut(s)	197, 679
Hpy188III	TCNNGA	4 cut(s)	419, 539, 749, 896
Hpy8I	GTNNAC	2 cut(s)	392, 623
Hpy99I	CGWCG	1 cut(s)	27
HpyAV	CCTTC	5 cut(s)	11, 193, 202, 208, 587
HpyCH4III	ACNGT	3 cut(s)	106, 764, 878
HpyCH4IV	ACGT	3 cut(s)	372, 1020, 1167
HpyCH4V	TGCA	9 cut(s)	69, 102, 598, 718, 850, 854, 859, 868, 1076
HpyF10VI	GCNNNNNNNGC	4 cut(s)	27, 108, 856, 865
HpyF3I	CTNAG	1 cut(s)	1032
HpySE526I	ACGT	3 cut(s)	372, 1020, 1167
Hsp92II	CATG	5 cut(s)	441, 602, 722, 854, 1029
Ksp22I	TGATCA	2 cut(s)	270, 679
Kzo9I	GATC	6 cut(s)	270, 415, 664, 679, 733, 988
LmnI	GCTCC	4 cut(s)	73, 287, 790, 892
LweI	GCATC	4 cut(s)	532, 550, 644, 1159
MaeI	CTAG	2 cut(s)	639, 1001
MaeII	ACGT	3 cut(s)	372, 1020, 1167
MaeIII	GTNAC	4 cut(s)	338, 780, 1078, 1107
MalI	GATC	6 cut(s)	272, 417, 666, 681, 735, 990
MboI	GATC	6 cut(s)	270, 415, 664, 679, 733, 988
MboII	GAAGA	7 cut(s)	26, 241, 666, 953, 966, 983, 1103
MflI	RGATCY	1 cut(s)	988
MluCI	AATT	8 cut(s)	160, 257, 367, 614, 869, 908, 957, 1045
MlyI	GAGTC	3 cut(s)	507, 598, 1013
MmeI	TCCRAC	1 cut(s)	860
MnlI	CCTC	9 cut(s)	44, 50, 68, 158, 182, 214, 278, 550, 942
MroXI	GAANNNNTTC	1 cut(s)	957
MseI	TTAA	3 cut(s)	362, 969, 1053
MslI	CAYNNNNRTG	2 cut(s)	309, 603
MspA1I	CMGCKG	2 cut(s)	276, 464
MspI	CCGG	2 cut(s)	264, 319
MspR9I	CCNGG	2 cut(s)	407, 891
Mva1269I	GAATGC	1 cut(s)	71
MvaI	CCWGG	2 cut(s)	407, 891
MwoI	GCNNNNNNNGC	4 cut(s)	27, 108, 856, 865
NdeII	GATC	6 cut(s)	270, 415, 664, 679, 733, 988
NlaIII	CATG	5 cut(s)	441, 602, 722, 854, 1029
NlaIV	GGNNCC	2 cut(s)	236, 792
NmeAIII	GCCGAG	1 cut(s)	802
NmuCI	GTSAC	2 cut(s)	338, 1078
NspI	RCATGY	3 cut(s)	722, 854, 1029
PaeI	GCATGC	1 cut(s)	854
PcsI	WCGNNNNNNNCGW	1 cut(s)	1173
PctI	GAATGC	1 cut(s)	71
PdmI	GAANNNNTTC	1 cut(s)	957
PfeI	GAWTC	1 cut(s)	899
PflMI	CCANNNNNTGG	1 cut(s)	440
PfoI	TCCNGGA	1 cut(s)	405
PinAI	ACCGGT	1 cut(s)	263
PkrI	GCNGC	4 cut(s)	29, 32, 349, 473
PleI	GAGTC	3 cut(s)	507, 597, 1012
PpsI	GAGTC	3 cut(s)	507, 597, 1012
Ppu21I	YACGTR	2 cut(s)	373, 1168
Psp6I	CCWGG	2 cut(s)	405, 889
PspFI	CCCAGC	1 cut(s)	705
PspGI	CCWGG	2 cut(s)	405, 889
PspN4I	GGNNCC	2 cut(s)	236, 792
PspPI	GGNCC	1 cut(s)	321
PstI	CTGCAG	1 cut(s)	861
PstNI	CAGNNNCTG	1 cut(s)	592
PsuI	RGATCY	1 cut(s)	988
PvuII	CAGCTG	2 cut(s)	276, 464
RsaI	GTAC	2 cut(s)	650, 930
RsaNI	GTAC	2 cut(s)	649, 929
RseI	CAYNNNNRTG	2 cut(s)	309, 603
SaqAI	TTAA	3 cut(s)	362, 969, 1053
SatI	GCNGC	4 cut(s)	28, 31, 348, 472
Sau3AI	GATC	6 cut(s)	270, 415, 664, 679, 733, 988
Sau96I	GGNCC	1 cut(s)	321
SchI	GAGTC	3 cut(s)	507, 598, 1013
ScrFI	CCNGG	2 cut(s)	407, 891
SfaNI	GCATC	4 cut(s)	532, 550, 644, 1159
SfcI	CTRYAG	2 cut(s)	112, 857
SmiMI	CAYNNNNRTG	2 cut(s)	309, 603
SnaBI	TACGTA	1 cut(s)	1168
SphI	GCATGC	1 cut(s)	854
Sse9I	AATT	8 cut(s)	160, 257, 367, 614, 869, 908, 957, 1045
SsiI	CCGC	6 cut(s)	28, 31, 165, 347, 472, 1102
SspI	AATATT	1 cut(s)	772
SspMI	CTAG	2 cut(s)	639, 1001
StyD4I	CCNGG	2 cut(s)	405, 889
TaaI	ACNGT	3 cut(s)	106, 764, 878
TaiI	ACGT	3 cut(s)	375, 1023, 1170
TaqI	TCGA	2 cut(s)	897, 1176
TasI	AATT	8 cut(s)	160, 257, 367, 614, 869, 908, 957, 1045
TatI	WGTACW	1 cut(s)	648
TauI	GCSGC	4 cut(s)	30, 33, 350, 474
TfiI	GAWTC	1 cut(s)	899
Tru1I	TTAA	3 cut(s)	362, 969, 1053
Tru9I	TTAA	3 cut(s)	362, 969, 1053
TscAI	CASTG	6 cut(s)	525, 767, 801, 861, 881, 1145
TseFI	GTSAC	2 cut(s)	338, 1078
Tsp45I	GTSAC	2 cut(s)	338, 1078
TspDTI	ATGAA	5 cut(s)	73, 826, 953, 966, 983
TspGWI	ACGGA	3 cut(s)	475, 734, 997
TspRI	CASTG	6 cut(s)	525, 767, 801, 861, 881, 1145
Van91I	CCANNNNNTGG	1 cut(s)	440
XapI	RAATTY	2 cut(s)	257, 1045
XceI	RCATGY	3 cut(s)	722, 854, 1029
XmiI	GTMKAC	1 cut(s)	622
XmnI	GAANNNNTTC	1 cut(s)	957
XspI	CTAG	2 cut(s)	639, 1001

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.