Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009489

Physical Location & Seq

Genomic Coordinates Forward (+)

31806798 .. 31810168

Gene Structure 3371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G337400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGAAAATGGGAGACCCAGAAGAAGCAGCAGAACATGGTCGTCGCCTCATCCTCCACAACTTCCTTTCCTTCCAAGAATGCAAGGAACTGGAGTTTATCCACAAGAGCAATTGTACGGTTGGGTACAGACCCCATGTGTTCTCAACCACTCTTTCGCATCTCATAGCCACCAATTCCGCCCACCTCATCATGCCCTTCGTCCCCATCAGAGAGAGGTTGAAGGAGAAGGTAGAGGAATTCTTTGGGTGCCAGTATGAACTCTTTGTTGAATTCACCGGTTTGATCAGCTGGAGTAGAGGATCGAGCATTGGGTGGCATAGTGATGACAACAGGCCCTATCTTAAGCAGCGTGACTTTGCGGCAGTCTGTTATTTGAATAGTTACGGAAATGATTTCAGAGGCGGACTTTTTCACTTCCAGGATGGGGATCCAGCAACTATTGTTCCATCAGGTGGGGATGTTGTGATATACACAGCTGACAGCCGCAACATTCATTCTGTTGATGAGATTACTGATGGGGAAAGACTCACACTGGCATTATGGTTTAGTCGTGATGCTACCTATGATGAGGATGCTAAACTTATAACCCTTCTGTCAAAGAATTTTTTGCACGATAATGCTCCTGAATTATGCCTGCCTTTTCCAGCATCCAGTAATATGTACTGGTTTTCACCAGACCAAGCTTCTTCTGATCAGCAGTTGGGTTTTGATATATGCTGGGCAAGACTGCATGTTCTTGGATACGATCTACTTTTCCATCAAGACAAGAGCTACTGTTCGAATATCTCTAAGTTACTTATGGAGCCACTGCGATTAACAAGGGGAGATGAGTTGTTTGAGCATGAGTTCATCAACATCTTGCATGCACTTCAGGTTGTACAATTCTACTGTTGGAAAGCTCCTGATTTCAAATCTGCCAAAGTAGAAGAAACTACCACGGTAGTCTTGTCACAATCACAAAGGGAGAGATTAGTTTGCCTCAAATCTTTATTTGCGAAGGATGTTTGTCTAGTAGACTCTGTATTTAGCAACGTGACATTCGTTGGGAGTGCACAACATTCCTTTAATTGGGTTGATTTTAGGATTGCAATCGCAAAGTGGGAAGATTATGTCCGCAAGTTACATAGAGAACTGGTAATGAGCTTACCACACTGGAGAACACAGCAATCTATATTTAATGCATCATTGGATGAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006457 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0019511 GO:0019538 GO:0019797 GO:0019798 GO:0031543 GO:0031544 GO:0032963 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0051213 GO:0055114 GO:0061077 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

400

Amino Acids

46.04

Weight (kDa)

5.63

Isoelectric Point (pI)

42.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68080 AT1G68080 AT1G68080 AT1G68080 AT1G68080
fragaria_vesca	FvH4_4g33040
malus_domestica	MD16G1013700.v1.1
prunus_persica	Prupe.1G337400_v2.0.a1 Prupe.1G337400_v2.0.a1
pyrus_communis	pycom13g01390 pycom16g01290
rosa_chinensis	RchiOBHm_Chr4g0442081
rosa_laevigata	RLG00000006042
rosa_multiflora	Rmu_sc0002501.1_g000006
rosa_roxburghii	Rroxscaffold_5G00382990
rosa_rugosa	Rorug04G0338700
rosa_samantha	Rh4AG390200 Rh4BG403700 Rh4BG403800 Rh4CG418800 Rh4DG396800
rosa_wichuraiana	Rw4G033720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	584
AccB1I	GGYRCC	1 cut(s)	246
AccB7I	CCANNNNNTGG	1 cut(s)	452
AccI	GTMKAC	1 cut(s)	1014
AciI	CCGC	5 cut(s)	177, 359, 402, 484, 1114
AclWI	GGATC	3 cut(s)	307, 422, 435
AcsI	RAATTY	3 cut(s)	236, 269, 601
AcuI	CTGAAG	1 cut(s)	854
AfaI	GTAC	4 cut(s)	115, 125, 662, 879
AfiI	CCNNNNNNNGG	3 cut(s)	424, 452, 1068
AflII	CTTAAG	1 cut(s)	341
AgeI	ACCGGT	1 cut(s)	275
AgsI	TTSAA	4 cut(s)	220, 269, 376, 910
AjnI	CCWGG	1 cut(s)	417
AluBI	AGCT	6 cut(s)	288, 476, 683, 771, 899, 1143
AluI	AGCT	6 cut(s)	288, 476, 683, 771, 899, 1143
Alw21I	GWGCWC	1 cut(s)	1054
Alw26I	GTCTC	1 cut(s)	6
Alw44I	GTGCAC	1 cut(s)	1050
AlwI	GGATC	3 cut(s)	307, 422, 435
AoxI	GGCC	1 cut(s)	332
ApaLI	GTGCAC	1 cut(s)	1050
ApeKI	GCWGC	2 cut(s)	26, 346
ApoI	RAATTY	3 cut(s)	236, 269, 601
AsiGI	ACCGGT	1 cut(s)	275
AspS9I	GGNCC	1 cut(s)	333
AsuHPI	GGTGA	2 cut(s)	265, 663
AsuII	TTCGAA	1 cut(s)	779
BaeGI	GKGCMC	1 cut(s)	1054
BamHI	GGATCC	1 cut(s)	427
BanI	GGYRCC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	1054
BbvI	GCAGC	2 cut(s)	38, 358
BccI	CCATC	5 cut(s)	212, 416, 454, 509, 765
BciT130I	CCWGG	1 cut(s)	419
BciVI	GTATCC	1 cut(s)	734
BclI	TGATCA	2 cut(s)	282, 691
BcoDI	GTCTC	1 cut(s)	6
BfaI	CTAG	1 cut(s)	1010
BfrI	CTTAAG	1 cut(s)	341
BfuI	GTATCC	1 cut(s)	734
BisI	GCNGC	4 cut(s)	27, 347, 360, 484
BlsI	GCNGC	4 cut(s)	28, 348, 361, 485
Bme1390I	CCNGG	1 cut(s)	419
BmgT120I	GGNCC	1 cut(s)	333
BmiI	GGNNCC	3 cut(s)	248, 429, 804
BmrFI	CCNGG	1 cut(s)	419
BmsI	GCATC	5 cut(s)	166, 544, 562, 656, 1190
BpmI	CTGGAG	3 cut(s)	110, 310, 1174
Bpu14I	TTCGAA	1 cut(s)	779
BsaBI	GATNNNNATC	2 cut(s)	426, 1088
BsaI	GGTCTC	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	936
BsaWI	WCCGGW	1 cut(s)	275
Bsc4I	CCNNNNNNNGG	3 cut(s)	424, 452, 1068
Bse118I	RCCGGY	1 cut(s)	275
Bse1I	ACTGG	7 cut(s)	93, 250, 537, 651, 668, 1137, 1157
Bse8I	GATNNNNATC	2 cut(s)	426, 1088
BseBI	CCWGG	1 cut(s)	419
BseDI	CCNNGG	1 cut(s)	936
BseGI	GGATG	7 cut(s)	48, 427, 463, 577, 647, 1006, 1195
BseJI	GATNNNNATC	2 cut(s)	426, 1088
BseLI	CCNNNNNNNGG	3 cut(s)	424, 452, 1068
BseNI	ACTGG	7 cut(s)	93, 250, 537, 651, 668, 1137, 1157
BseSI	GKGCMC	1 cut(s)	1054
BseXI	GCAGC	2 cut(s)	38, 358
BseYI	CCCAGC	1 cut(s)	717
BshFI	GGCC	1 cut(s)	334
BshNI	GGYRCC	1 cut(s)	246
BshTI	ACCGGT	1 cut(s)	275
BsiHKAI	GWGCWC	1 cut(s)	1054
BsiSI	CCGG	1 cut(s)	276
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	3 cut(s)	424, 452, 1068
BsmAI	GTCTC	1 cut(s)	6
BsmFI	GGGAC	1 cut(s)	185
BsmI	GAATGC	1 cut(s)	83
BsnI	GGCC	1 cut(s)	334
Bso31I	GGTCTC	1 cut(s)	6
Bsp119I	TTCGAA	1 cut(s)	779
Bsp1286I	GDGCHC	1 cut(s)	1054
Bsp1407I	TGTACA	1 cut(s)	877
Bsp143I	GATC	5 cut(s)	282, 299, 427, 691, 745
BspACI	CCGC	5 cut(s)	177, 359, 402, 484, 1114
BspANI	GGCC	1 cut(s)	334
BspLI	GGNNCC	3 cut(s)	248, 429, 804
BspPI	GGATC	3 cut(s)	307, 422, 435
BspT104I	TTCGAA	1 cut(s)	779
BspT107I	GGYRCC	1 cut(s)	246
BspTI	CTTAAG	1 cut(s)	341
BspTNI	GGTCTC	1 cut(s)	6
BsrFI	RCCGGY	1 cut(s)	275
BsrGI	TGTACA	1 cut(s)	877
BsrI	ACTGG	7 cut(s)	93, 250, 537, 651, 668, 1137, 1157
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	1 cut(s)	936
BssMI	GATC	5 cut(s)	282, 299, 427, 691, 745
Bst2UI	CCWGG	1 cut(s)	419
Bst4CI	ACNGT	4 cut(s)	118, 776, 890, 940
BstAFI	CTTAAG	1 cut(s)	341
BstAUI	TGTACA	1 cut(s)	877
BstBI	TTCGAA	1 cut(s)	779
BstC8I	GCNNGC	2 cut(s)	635, 864
BstDEI	CTNAG	1 cut(s)	789
BstDSI	CCRYGG	1 cut(s)	936
BstF5I	GGATG	7 cut(s)	48, 427, 463, 577, 647, 1006, 1195
BstKTI	GATC	5 cut(s)	285, 302, 430, 694, 748
BstMAI	GTCTC	1 cut(s)	6
BstMBI	GATC	5 cut(s)	282, 299, 427, 691, 745
BstNI	CCWGG	1 cut(s)	419
BstNSI	RCATGY	2 cut(s)	734, 866
BstSCI	CCNGG	1 cut(s)	417
BstSLI	GKGCMC	1 cut(s)	1054
BstV1I	GCAGC	2 cut(s)	38, 358
BstX2I	RGATCY	1 cut(s)	427
BstYI	RGATCY	1 cut(s)	427
BsuI	GTATCC	1 cut(s)	734
BsuRI	GGCC	1 cut(s)	334
BtgI	CCRYGG	1 cut(s)	936
BtsCI	GGATG	7 cut(s)	48, 427, 463, 577, 647, 1006, 1195
BtsI	GCAGTG	1 cut(s)	806
BtsIMutI	CAGTG	3 cut(s)	530, 806, 1150
Cac8I	GCNNGC	2 cut(s)	635, 864
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	1 cut(s)	333
Csp6I	GTAC	4 cut(s)	114, 124, 661, 878
CspAI	ACCGGT	1 cut(s)	275
CviAII	CATG	6 cut(s)	35, 134, 190, 731, 842, 863
CviQI	GTAC	4 cut(s)	114, 124, 661, 878
DdeI	CTNAG	1 cut(s)	789
DpnI	GATC	5 cut(s)	284, 301, 429, 693, 747
DpnII	GATC	5 cut(s)	282, 299, 427, 691, 745
EciI	GGCGGA	2 cut(s)	166, 417
Eco31I	GGTCTC	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	854
EcoO109I	RGGNCCY	1 cut(s)	333
EcoRI	GAATTC	2 cut(s)	236, 269
EcoRII	CCWGG	1 cut(s)	417
EcoT22I	ATGCAT	1 cut(s)	1183
FaeI	CATG	6 cut(s)	38, 137, 193, 734, 845, 866
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	6 cut(s)	34, 133, 189, 730, 841, 862
FbaI	TGATCA	2 cut(s)	282, 691
FblI	GTMKAC	1 cut(s)	1014
Fnu4HI	GCNGC	4 cut(s)	27, 347, 360, 484
FokI	GGATG	6 cut(s)	35, 434, 470, 584, 634, 1013
Fsp4HI	GCNGC	4 cut(s)	27, 347, 360, 484
FspBI	CTAG	1 cut(s)	1010
GluI	GCNGC	4 cut(s)	27, 347, 360, 484
GsaI	CCCAGC	1 cut(s)	721
GsuI	CTGGAG	3 cut(s)	110, 310, 1174
HaeIII	GGCC	1 cut(s)	334
HapII	CCGG	1 cut(s)	276
Hin1II	CATG	6 cut(s)	38, 137, 193, 734, 845, 866
HindIII	AAGCTT	1 cut(s)	681
HinfI	GANTC	2 cut(s)	525, 1016
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	2 cut(s)	265, 663
Hpy166II	GTNNAC	2 cut(s)	1015, 1052
Hpy188I	TCNGA	3 cut(s)	209, 398, 691
Hpy188III	TCNNGA	4 cut(s)	551, 623, 761, 902
Hpy8I	GTNNAC	2 cut(s)	1015, 1052
Hpy99I	CGWCG	1 cut(s)	45
HpyAV	CCTTC	6 cut(s)	79, 205, 214, 220, 599, 991
HpyCH4III	ACNGT	4 cut(s)	118, 776, 890, 940
HpyCH4IV	ACGT	1 cut(s)	1032
HpyCH4V	TGCA	8 cut(s)	81, 610, 730, 862, 866, 1052, 1088, 1181
HpyF3I	CTNAG	1 cut(s)	789
HpySE526I	ACGT	1 cut(s)	1032
Hsp92II	CATG	6 cut(s)	38, 137, 193, 734, 845, 866
Ksp22I	TGATCA	2 cut(s)	282, 691
Kzo9I	GATC	5 cut(s)	282, 299, 427, 691, 745
LmnI	GCTCC	3 cut(s)	625, 802, 904
Lsp1109I	GCAGC	2 cut(s)	38, 358
LweI	GCATC	5 cut(s)	166, 544, 562, 656, 1190
MaeI	CTAG	1 cut(s)	1010
MaeII	ACGT	1 cut(s)	1032
MaeIII	GTNAC	6 cut(s)	350, 380, 792, 948, 1033, 1119
MalI	GATC	5 cut(s)	284, 301, 429, 693, 747
MboI	GATC	5 cut(s)	282, 299, 427, 691, 745
MboII	GAAGA	4 cut(s)	32, 678, 938, 1115
MfeI	CAATTG	1 cut(s)	109
MflI	RGATCY	1 cut(s)	427
MhlI	GDGCHC	1 cut(s)	1054
MluCI	AATT	8 cut(s)	109, 172, 236, 269, 601, 626, 881, 1066
MlyI	GAGTC	2 cut(s)	519, 1010
MmeI	TCCRAC	1 cut(s)	872
MnlI	CCTC	9 cut(s)	56, 62, 194, 207, 226, 290, 392, 562, 989
Mph1103I	ATGCAT	1 cut(s)	1183
MseI	TTAA	4 cut(s)	342, 815, 1065, 1176
MslI	CAYNNNNRTG	2 cut(s)	321, 615
MspA1I	CMGCKG	2 cut(s)	288, 476
MspCI	CTTAAG	1 cut(s)	341
MspI	CCGG	1 cut(s)	276
MspR9I	CCNGG	1 cut(s)	419
MunI	CAATTG	1 cut(s)	109
Mva1269I	GAATGC	1 cut(s)	83
MvaI	CCWGG	1 cut(s)	419
NdeII	GATC	5 cut(s)	282, 299, 427, 691, 745
NlaIII	CATG	6 cut(s)	38, 137, 193, 734, 845, 866
NlaIV	GGNNCC	3 cut(s)	248, 429, 804
NmuCI	GTSAC	3 cut(s)	350, 948, 1033
NsiI	ATGCAT	1 cut(s)	1183
NspI	RCATGY	2 cut(s)	734, 866
NspV	TTCGAA	1 cut(s)	779
PaeI	GCATGC	1 cut(s)	866
PcsI	WCGNNNNNNNCGW	1 cut(s)	1038
PctI	GAATGC	1 cut(s)	83
PflMI	CCANNNNNTGG	1 cut(s)	452
PfoI	TCCNGGA	1 cut(s)	417
PinAI	ACCGGT	1 cut(s)	275
PkrI	GCNGC	4 cut(s)	28, 348, 361, 485
PleI	GAGTC	2 cut(s)	519, 1010
PpsI	GAGTC	2 cut(s)	519, 1010
PsiI	TTATAA	1 cut(s)	584
Psp6I	CCWGG	1 cut(s)	417
PspFI	CCCAGC	1 cut(s)	717
PspGI	CCWGG	1 cut(s)	417
PspN4I	GGNNCC	3 cut(s)	248, 429, 804
PspPI	GGNCC	1 cut(s)	333
PsuI	RGATCY	1 cut(s)	427
PvuII	CAGCTG	2 cut(s)	288, 476
RsaI	GTAC	4 cut(s)	115, 125, 662, 879
RsaNI	GTAC	4 cut(s)	114, 124, 661, 878
RseI	CAYNNNNRTG	2 cut(s)	321, 615
SaqAI	TTAA	4 cut(s)	342, 815, 1065, 1176
SatI	GCNGC	4 cut(s)	27, 347, 360, 484
Sau3AI	GATC	5 cut(s)	282, 299, 427, 691, 745
Sau96I	GGNCC	1 cut(s)	333
SchI	GAGTC	2 cut(s)	519, 1010
ScrFI	CCNGG	1 cut(s)	419
SduI	GDGCHC	1 cut(s)	1054
SfaNI	GCATC	5 cut(s)	166, 544, 562, 656, 1190
SfuI	TTCGAA	1 cut(s)	779
SmiMI	CAYNNNNRTG	2 cut(s)	321, 615
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
SphI	GCATGC	1 cut(s)	866
Sse9I	AATT	8 cut(s)	109, 172, 236, 269, 601, 626, 881, 1066
SsiI	CCGC	5 cut(s)	177, 359, 402, 484, 1114
SspMI	CTAG	1 cut(s)	1010
StyD4I	CCNGG	1 cut(s)	417
TaaI	ACNGT	4 cut(s)	118, 776, 890, 940
TaiI	ACGT	1 cut(s)	1035
TaqI	TCGA	2 cut(s)	302, 779
TasI	AATT	8 cut(s)	109, 172, 236, 269, 601, 626, 881, 1066
TatI	WGTACW	2 cut(s)	660, 877
TauI	GCSGC	2 cut(s)	362, 486
Tru1I	TTAA	4 cut(s)	342, 815, 1065, 1176
Tru9I	TTAA	4 cut(s)	342, 815, 1065, 1176
TscAI	CASTG	3 cut(s)	537, 813, 1157
TseFI	GTSAC	3 cut(s)	350, 948, 1033
TseI	GCWGC	2 cut(s)	26, 346
Tsp45I	GTSAC	3 cut(s)	350, 948, 1033
TspDTI	ATGAA	4 cut(s)	17, 270, 482, 838
TspGWI	ACGGA	1 cut(s)	399
TspRI	CASTG	3 cut(s)	537, 813, 1157
Van91I	CCANNNNNTGG	1 cut(s)	452
Vha464I	CTTAAG	1 cut(s)	341
VneI	GTGCAC	1 cut(s)	1050
XapI	RAATTY	3 cut(s)	236, 269, 601
XceI	RCATGY	2 cut(s)	734, 866
XmiI	GTMKAC	1 cut(s)	1014
XspI	CTAG	1 cut(s)	1010
Zsp2I	ATGCAT	1 cut(s)	1183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.