Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0009489

Physical Location & Seq

Genomic Coordinates Reverse (-)

55440263 .. 55442107

Gene Structure 1845 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG403800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGCATACCCAGAAGAAGAACATCCTCGGCTTCTTCTCCACAACTTCCTCTCTGTCCAGGAATGCAAGGAACTGGAATATATACACAAAAGCAATTGCACTGTGGGTTACAGACCCAATGTCTTCTCAACTACTCTTTCACATCTCATAGCCACCAACTGTGCCCATCTCATCATGCCCTTCGTCCCCATCAGAGAGAGGTTGAAGGAGAAGGTAGAGGAATTCTTTGGCTGCGAGTATGAACTCTTTGTTGAATTCACCGGTTTGATCAGCTGGAGTAGAGGATCAAGCATTGGGTGGCATAGTGATGACAACAGGCCCTATCTCAAACAGCGTGACTTTGCGGCAGTTTGTTATTTGAACAATTACGGGGATGATTTCAAAGGTGGACTTTTTCACTTCCAGGATGGGGATCTAACAACTATTGTTCCATCAAGTGGGGATGTTGTGATATACACGGCTGACATCCGCAACACTCACTCTGTTGATGAGATTACTGATGGGGAAAGACTCACAATGGCATTATGGTTCAGTCGTGATGCAGCCCATGATGAAGATGCTAAACTTATTTCGCTTCTCTCACAGACCCCGTTACGAGATAATGGTCCGGAACTATGGCTACCTTTGCCAGCATCGAGTAATATGTACTGGTTTTCACCACAACAAGCTTCGTCCCATGATCAGTTGGGATTTGATATATGCTGTGCAAGACTGCATGTTCTTGGATATGATGTAGTATACTCTGAAGACAAGATCTCCTGTTCAAATATTTCTGAGTTACAGATGGAGAAGTTGCGATTAGCAAGGGGAGATGAGTTGTTTGACTATGAGTTTGTCAACATCTTGCACGCACTTCAGGTAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006457 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0019511 GO:0019538 GO:0019797 GO:0019798 GO:0031543 GO:0031544 GO:0032963 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0051213 GO:0055114 GO:0061077 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

288

Amino Acids

33.02

Weight (kDa)

4.87

Isoelectric Point (pI)

43.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy_3	PF13640	93 - 177	1.5e-11	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68080 AT1G68080 AT1G68080 AT1G68080 AT1G68080
fragaria_vesca	FvH4_4g33040
malus_domestica	MD16G1013700.v1.1
prunus_persica	Prupe.1G337400_v2.0.a1 Prupe.1G337400_v2.0.a1
pyrus_communis	pycom13g01390 pycom16g01290
rosa_chinensis	RchiOBHm_Chr4g0442081
rosa_laevigata	RLG00000006042
rosa_multiflora	Rmu_sc0002501.1_g000006
rosa_roxburghii	Rroxscaffold_5G00382990
rosa_rugosa	Rorug04G0338700
rosa_samantha	Rh4AG390200 Rh4BG403700 Rh4BG403800 Rh4CG418800 Rh4DG396800
rosa_wichuraiana	Rw4G033720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	437
AccI	GTMKAC	1 cut(s)	738
AccIII	TCCGGA	1 cut(s)	607
AciI	CCGC	2 cut(s)	344, 469
AclWI	GGATC	2 cut(s)	292, 420
AcsI	RAATTY	2 cut(s)	221, 254
AcuI	CTGAAG	2 cut(s)	765, 839
AfaI	GTAC	1 cut(s)	647
AfiI	CCNNNNNNNGG	2 cut(s)	409, 437
AgeI	ACCGGT	1 cut(s)	260
AgsI	TTSAA	5 cut(s)	205, 254, 361, 382, 765
AhdI	GACNNNNNGTC	1 cut(s)	119
AjnI	CCWGG	2 cut(s)	57, 402
AluBI	AGCT	2 cut(s)	273, 668
AluI	AGCT	2 cut(s)	273, 668
AlwI	GGATC	2 cut(s)	292, 420
Aor13HI	TCCGGA	1 cut(s)	607
AoxI	GGCC	1 cut(s)	317
ApeKI	GCWGC	2 cut(s)	231, 542
ApoI	RAATTY	2 cut(s)	221, 254
ArsI	GACNNNNNNTTYG	2 cut(s)	815, 847
AsiGI	ACCGGT	1 cut(s)	260
AspS9I	GGNCC	2 cut(s)	318, 605
AsuHPI	GGTGA	2 cut(s)	250, 648
AvaII	GGWCC	1 cut(s)	605
BaeGI	GKGCMC	1 cut(s)	166
BbsI	GAAGAC	2 cut(s)	115, 753
BbvI	GCAGC	2 cut(s)	218, 554
BccI	CCATC	6 cut(s)	174, 197, 401, 439, 494, 778
BceAI	ACGGC	1 cut(s)	474
BciT130I	CCWGG	2 cut(s)	59, 404
BclI	TGATCA	2 cut(s)	267, 679
BglII	AGATCT	1 cut(s)	753
BisI	GCNGC	3 cut(s)	232, 345, 543
BlsI	GCNGC	3 cut(s)	233, 346, 544
Bme1390I	CCNGG	2 cut(s)	59, 404
Bme18I	GGWCC	1 cut(s)	605
BmeRI	GACNNNNNGTC	1 cut(s)	119
BmgT120I	GGNCC	2 cut(s)	318, 605
BmrFI	CCNGG	2 cut(s)	59, 404
BmsI	GCATC	3 cut(s)	529, 547, 641
BpiI	GAAGAC	2 cut(s)	115, 753
BpmI	CTGGAG	1 cut(s)	295
BsaBI	GATNNNNATC	1 cut(s)	411
BsaJI	CCNNGG	1 cut(s)	26
BsaWI	WCCGGW	2 cut(s)	260, 607
BsaXI	ACNNNNNCTCC	2 cut(s)	740, 770
Bsc4I	CCNNNNNNNGG	2 cut(s)	409, 437
Bse118I	RCCGGY	1 cut(s)	260
Bse1I	ACTGG	2 cut(s)	78, 653
Bse8I	GATNNNNATC	1 cut(s)	411
BseAI	TCCGGA	1 cut(s)	607
BseBI	CCWGG	2 cut(s)	59, 404
BseDI	CCNNGG	1 cut(s)	26
BseGI	GGATG	5 cut(s)	22, 379, 412, 448, 465
BseJI	GATNNNNATC	1 cut(s)	411
BseLI	CCNNNNNNNGG	2 cut(s)	409, 437
BseMII	CTCAG	1 cut(s)	765
BseNI	ACTGG	2 cut(s)	78, 653
BseSI	GKGCMC	1 cut(s)	166
BseXI	GCAGC	2 cut(s)	218, 554
BshFI	GGCC	1 cut(s)	319
BshTI	ACCGGT	1 cut(s)	260
BsiSI	CCGG	2 cut(s)	261, 608
BslFI	GGGAC	2 cut(s)	170, 658
BslI	CCNNNNNNNGG	2 cut(s)	409, 437
BsmFI	GGGAC	2 cut(s)	170, 658
BsmI	GAATGC	1 cut(s)	68
BsnI	GGCC	1 cut(s)	319
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp13I	TCCGGA	1 cut(s)	607
Bsp143I	GATC	5 cut(s)	267, 284, 412, 679, 753
BspACI	CCGC	2 cut(s)	344, 469
BspANI	GGCC	1 cut(s)	319
BspCNI	CTCAG	1 cut(s)	766
BspEI	TCCGGA	1 cut(s)	607
BspPI	GGATC	2 cut(s)	292, 420
BsrFI	RCCGGY	1 cut(s)	260
BsrI	ACTGG	2 cut(s)	78, 653
BssAI	RCCGGY	1 cut(s)	260
BssECI	CCNNGG	1 cut(s)	26
BssMI	GATC	5 cut(s)	267, 284, 412, 679, 753
BssNAI	GTATAC	1 cut(s)	739
Bst1107I	GTATAC	1 cut(s)	739
Bst2UI	CCWGG	2 cut(s)	59, 404
Bst4CI	ACNGT	2 cut(s)	103, 161
BstC8I	GCNNGC	2 cut(s)	630, 849
BstDEI	CTNAG	1 cut(s)	774
BstF5I	GGATG	5 cut(s)	22, 379, 412, 448, 465
BstKTI	GATC	5 cut(s)	270, 287, 415, 682, 756
BstMBI	GATC	5 cut(s)	267, 284, 412, 679, 753
BstMWI	GCNNNNNNNGC	1 cut(s)	625
BstNI	CCWGG	2 cut(s)	59, 404
BstNSI	RCATGY	1 cut(s)	719
BstSCI	CCNGG	2 cut(s)	57, 402
BstSLI	GKGCMC	1 cut(s)	166
BstV1I	GCAGC	2 cut(s)	218, 554
BstV2I	GAAGAC	2 cut(s)	115, 753
BstX2I	RGATCY	2 cut(s)	412, 753
BstYI	RGATCY	2 cut(s)	412, 753
BstZ17I	GTATAC	1 cut(s)	739
BsuRI	GGCC	1 cut(s)	319
BtsCI	GGATG	5 cut(s)	22, 379, 412, 448, 465
BtsIMutI	CAGTG	1 cut(s)	99
Cac8I	GCNNGC	2 cut(s)	630, 849
Cfr10I	RCCGGY	1 cut(s)	260
Cfr13I	GGNCC	2 cut(s)	318, 605
Csp6I	GTAC	1 cut(s)	646
CspAI	ACCGGT	1 cut(s)	260
CviAII	CATG	4 cut(s)	175, 548, 677, 716
CviJI	RGCY	9 cut(s)	31, 152, 231, 273, 319, 461, 545, 619, 668
CviKI_1	RGCY	9 cut(s)	31, 152, 231, 273, 319, 461, 545, 619, 668
CviQI	GTAC	1 cut(s)	646
DdeI	CTNAG	1 cut(s)	774
DpnI	GATC	5 cut(s)	269, 286, 414, 681, 755
DpnII	GATC	5 cut(s)	267, 284, 412, 679, 753
DriI	GACNNNNNGTC	1 cut(s)	119
Eam1105I	GACNNNNNGTC	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	605
Eco57I	CTGAAG	2 cut(s)	765, 839
EcoO109I	RGGNCCY	1 cut(s)	318
EcoRI	GAATTC	2 cut(s)	221, 254
EcoRII	CCWGG	2 cut(s)	57, 402
FaeI	CATG	4 cut(s)	178, 551, 680, 719
FalI	AAGNNNNNCTT	2 cut(s)	375, 407
FaqI	GGGAC	2 cut(s)	170, 658
FatI	CATG	4 cut(s)	174, 547, 676, 715
FbaI	TGATCA	2 cut(s)	267, 679
FblI	GTMKAC	1 cut(s)	738
Fnu4HI	GCNGC	3 cut(s)	232, 345, 543
FokI	GGATG	5 cut(s)	9, 386, 419, 452, 455
Fsp4HI	GCNGC	3 cut(s)	232, 345, 543
GluI	GCNGC	3 cut(s)	232, 345, 543
GsuI	CTGGAG	1 cut(s)	295
HaeIII	GGCC	1 cut(s)	319
HapII	CCGG	2 cut(s)	261, 608
Hin1II	CATG	4 cut(s)	178, 551, 680, 719
HincII	GTYRAC	1 cut(s)	838
HindII	GTYRAC	1 cut(s)	838
HindIII	AAGCTT	1 cut(s)	666
HinfI	GANTC	1 cut(s)	510
HpaII	CCGG	2 cut(s)	261, 608
HphI	GGTGA	2 cut(s)	250, 648
Hpy166II	GTNNAC	3 cut(s)	389, 739, 838
Hpy188I	TCNGA	3 cut(s)	194, 745, 775
Hpy188III	TCNNGA	2 cut(s)	536, 608
Hpy8I	GTNNAC	3 cut(s)	389, 739, 838
HpyAV	CCTTC	3 cut(s)	190, 199, 205
HpyCH4III	ACNGT	2 cut(s)	103, 161
HpyCH4V	TGCA	6 cut(s)	66, 99, 542, 707, 715, 847
HpyF10VI	GCNNNNNNNGC	1 cut(s)	625
HpyF3I	CTNAG	1 cut(s)	774
Hsp92II	CATG	4 cut(s)	178, 551, 680, 719
Kpn2I	TCCGGA	1 cut(s)	607
Ksp22I	TGATCA	2 cut(s)	267, 679
Kzo9I	GATC	5 cut(s)	267, 284, 412, 679, 753
Lsp1109I	GCAGC	2 cut(s)	218, 554
LweI	GCATC	3 cut(s)	529, 547, 641
MaeIII	GTNAC	4 cut(s)	107, 335, 591, 777
MalI	GATC	5 cut(s)	269, 286, 414, 681, 755
MboI	GATC	5 cut(s)	267, 284, 412, 679, 753
MboII	GAAGA	6 cut(s)	26, 26, 29, 115, 566, 758
MfeI	CAATTG	1 cut(s)	94
MflI	RGATCY	2 cut(s)	412, 753
MhlI	GDGCHC	1 cut(s)	166
MluCI	AATT	4 cut(s)	94, 221, 254, 364
MlyI	GAGTC	1 cut(s)	504
MnlI	CCTC	5 cut(s)	36, 59, 192, 211, 275
MroI	TCCGGA	1 cut(s)	607
MslI	CAYNNNNRTG	1 cut(s)	306
MspA1I	CMGCKG	1 cut(s)	273
MspI	CCGG	2 cut(s)	261, 608
MspR9I	CCNGG	2 cut(s)	59, 404
MunI	CAATTG	1 cut(s)	94
Mva1269I	GAATGC	1 cut(s)	68
MvaI	CCWGG	2 cut(s)	59, 404
MwoI	GCNNNNNNNGC	1 cut(s)	625
NdeII	GATC	5 cut(s)	267, 284, 412, 679, 753
NlaIII	CATG	4 cut(s)	178, 551, 680, 719
NmeAIII	GCCGAG	1 cut(s)	7
NmuCI	GTSAC	1 cut(s)	335
NspI	RCATGY	1 cut(s)	719
PctI	GAATGC	1 cut(s)	68
PflMI	CCANNNNNTGG	1 cut(s)	437
PfoI	TCCNGGA	2 cut(s)	57, 402
PinAI	ACCGGT	1 cut(s)	260
PkrI	GCNGC	3 cut(s)	233, 346, 544
PleI	GAGTC	1 cut(s)	504
PpsI	GAGTC	1 cut(s)	504
Psp6I	CCWGG	2 cut(s)	57, 402
PspGI	CCWGG	2 cut(s)	57, 402
PspPI	GGNCC	2 cut(s)	318, 605
PsrI	GAACNNNNNNTAC	2 cut(s)	603, 635
PsuI	RGATCY	2 cut(s)	412, 753
PvuII	CAGCTG	1 cut(s)	273
RsaI	GTAC	1 cut(s)	647
RsaNI	GTAC	1 cut(s)	646
RseI	CAYNNNNRTG	1 cut(s)	306
SatI	GCNGC	3 cut(s)	232, 345, 543
Sau3AI	GATC	5 cut(s)	267, 284, 412, 679, 753
Sau96I	GGNCC	2 cut(s)	318, 605
SchI	GAGTC	1 cut(s)	504
ScrFI	CCNGG	2 cut(s)	59, 404
SduI	GDGCHC	1 cut(s)	166
SetI	ASST	7 cut(s)	203, 216, 275, 388, 625, 670, 861
SfaNI	GCATC	3 cut(s)	529, 547, 641
SinI	GGWCC	1 cut(s)	605
SmiMI	CAYNNNNRTG	1 cut(s)	306
Sse9I	AATT	4 cut(s)	94, 221, 254, 364
SsiI	CCGC	2 cut(s)	344, 469
SspI	AATATT	1 cut(s)	769
StyD4I	CCNGG	2 cut(s)	57, 402
TaaI	ACNGT	2 cut(s)	103, 161
TaqI	TCGA	1 cut(s)	635
TasI	AATT	4 cut(s)	94, 221, 254, 364
TatI	WGTACW	1 cut(s)	645
TauI	GCSGC	1 cut(s)	347
TscAI	CASTG	1 cut(s)	106
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	2 cut(s)	231, 542
Tsp45I	GTSAC	1 cut(s)	335
TspDTI	ATGAA	2 cut(s)	255, 567
TspRI	CASTG	1 cut(s)	106
Van91I	CCANNNNNTGG	1 cut(s)	437
VpaK11BI	GGWCC	1 cut(s)	605
XapI	RAATTY	2 cut(s)	221, 254
XceI	RCATGY	1 cut(s)	719
XmiI	GTMKAC	1 cut(s)	738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.