Transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G68640 |
| fragaria_vesca | FvH4_4g27750 FvH4_4g27750 |
| malus_domestica | MD13G1044600.v1.1 MD16G1046000.v1.1 |
| prunus_persica | Prupe.1G307300_v2.0.a1 Prupe.1G307300_v2.0.a1 Prupe.1G307300_v2.0.a1 Prupe.1G307300_v2.0.a1 Prupe.1G307300_v2.0.a1 |
| pyrus_communis | pycom13g03950 pycom16g04060 |
| rosa_chinensis | RchiOBHm_Chr4g0435611 |
| rosa_laevigata | RLG00000006577 |
| rosa_multiflora | Rmu_sc0000051.1_g000002 |
| rosa_roxburghii | Rroxscaffold_5G00376840 |
| rosa_rugosa | Rorug04G0287100 |
| rosa_samantha | Rh4AG342400 Rh4BG350700 Rh4CG365400 Rh4DG345000 |
| rosa_wichuraiana | Rw4G029880 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 919 |
| AatII | GACGTC | 1 cut(s) | 879 |
| Acc36I | ACCTGC | 1 cut(s) | 919 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 107 |
| AccI | GTMKAC | 1 cut(s) | 508 |
| AccII | CGCG | 2 cut(s) | 804, 1281 |
| AciI | CCGC | 1 cut(s) | 665 |
| AclWI | GGATC | 4 cut(s) | 646, 675, 980, 993 |
| AcsI | RAATTY | 2 cut(s) | 775, 1254 |
| AcuI | CTGAAG | 4 cut(s) | 49, 144, 1010, 1116 |
| AcyI | GRCGYC | 1 cut(s) | 876 |
| AfaI | GTAC | 2 cut(s) | 284, 865 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 107, 1210 |
| AflII | CTTAAG | 2 cut(s) | 760, 962 |
| AflIII | ACRYGT | 2 cut(s) | 722, 802 |
| AgsI | TTSAA | 7 cut(s) | 16, 242, 424, 650, 710, 1116, 1196 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 504 |
| AhlI | ACTAGT | 1 cut(s) | 277 |
| AjnI | CCWGG | 1 cut(s) | 1209 |
| Alw21I | GWGCWC | 3 cut(s) | 618, 628, 1324 |
| Alw26I | GTCTC | 4 cut(s) | 229, 1041, 1091, 1347 |
| AlwI | GGATC | 4 cut(s) | 646, 675, 980, 993 |
| Ama87I | CYCGRG | 1 cut(s) | 1094 |
| ApeKI | GCWGC | 4 cut(s) | 9, 530, 683, 1274 |
| ApoI | RAATTY | 2 cut(s) | 775, 1254 |
| AspLEI | GCGC | 1 cut(s) | 1283 |
| AspS9I | GGNCC | 2 cut(s) | 997, 1121 |
| AsuC2I | CCSGG | 1 cut(s) | 524 |
| AsuHPI | GGTGA | 3 cut(s) | 107, 800, 1252 |
| AvaI | CYCGRG | 1 cut(s) | 1094 |
| AvaII | GGWCC | 2 cut(s) | 997, 1121 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 266, 299, 855, 888 |
| BamHI | GGATCC | 1 cut(s) | 985 |
| BanII | GRGCYC | 2 cut(s) | 618, 628 |
| BbsI | GAAGAC | 2 cut(s) | 45, 911 |
| Bbv12I | GWGCWC | 3 cut(s) | 618, 628, 1324 |
| BbvI | GCAGC | 4 cut(s) | 21, 517, 695, 1261 |
| BciT130I | CCWGG | 1 cut(s) | 1211 |
| BclI | TGATCA | 2 cut(s) | 490, 750 |
| BcnI | CCSGG | 1 cut(s) | 524 |
| BcoDI | GTCTC | 4 cut(s) | 229, 1041, 1091, 1347 |
| BcuI | ACTAGT | 1 cut(s) | 277 |
| BfaI | CTAG | 6 cut(s) | 278, 486, 534, 605, 809, 1350 |
| BfrI | CTTAAG | 2 cut(s) | 760, 962 |
| BfuAI | ACCTGC | 1 cut(s) | 919 |
| BisI | GCNGC | 4 cut(s) | 10, 531, 684, 1275 |
| BlsI | GCNGC | 4 cut(s) | 11, 532, 685, 1276 |
| Bme1390I | CCNGG | 2 cut(s) | 524, 1211 |
| Bme18I | GGWCC | 2 cut(s) | 997, 1121 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 504 |
| BmeT110I | CYCGRG | 1 cut(s) | 1094 |
| BmgT120I | GGNCC | 2 cut(s) | 997, 1121 |
| BmiI | GGNNCC | 3 cut(s) | 977, 987, 1122 |
| BmrFI | CCNGG | 2 cut(s) | 524, 1211 |
| BmsI | GCATC | 3 cut(s) | 432, 805, 1042 |
| BpiI | GAAGAC | 2 cut(s) | 45, 911 |
| BpuEI | CTTGAG | 3 cut(s) | 104, 247, 596 |
| BpuMI | CCSGG | 1 cut(s) | 524 |
| Bsa29I | ATCGAT | 1 cut(s) | 132 |
| BsaBI | GATNNNNATC | 1 cut(s) | 946 |
| BsaHI | GRCGYC | 1 cut(s) | 876 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 300, 330 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 107, 1210 |
| Bse1I | ACTGG | 1 cut(s) | 101 |
| Bse8I | GATNNNNATC | 1 cut(s) | 946 |
| BseBI | CCWGG | 1 cut(s) | 1211 |
| BseCI | ATCGAT | 1 cut(s) | 132 |
| BseGI | GGATG | 4 cut(s) | 447, 820, 1057, 1293 |
| BseJI | GATNNNNATC | 1 cut(s) | 946 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 107, 1210 |
| BseMII | CTCAG | 4 cut(s) | 62, 431, 530, 906 |
| BseNI | ACTGG | 1 cut(s) | 101 |
| BseRI | GAGGAG | 7 cut(s) | 84, 101, 261, 269, 324, 327, 669 |
| BseXI | GCAGC | 4 cut(s) | 21, 517, 695, 1261 |
| Bsh1236I | CGCG | 2 cut(s) | 804, 1281 |
| BshVI | ATCGAT | 1 cut(s) | 132 |
| BsiHKAI | GWGCWC | 3 cut(s) | 618, 628, 1324 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1094 |
| BsiSI | CCGG | 2 cut(s) | 523, 687 |
| BslFI | GGGAC | 1 cut(s) | 307 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 107, 1210 |
| BsmAI | GTCTC | 4 cut(s) | 229, 1041, 1091, 1347 |
| BsmBI | CGTCTC | 2 cut(s) | 1041, 1091 |
| BsmFI | GGGAC | 1 cut(s) | 307 |
| BsoBI | CYCGRG | 1 cut(s) | 1094 |
| Bsp1286I | GDGCHC | 3 cut(s) | 618, 628, 1324 |
| Bsp143I | GATC | 9 cut(s) | 466, 490, 638, 667, 750, 764, 796, 947, 985 |
| BspACI | CCGC | 1 cut(s) | 665 |
| BspCNI | CTCAG | 4 cut(s) | 61, 430, 529, 905 |
| BspDI | ATCGAT | 1 cut(s) | 132 |
| BspFNI | CGCG | 2 cut(s) | 804, 1281 |
| BspLI | GGNNCC | 3 cut(s) | 977, 987, 1122 |
| BspMI | ACCTGC | 1 cut(s) | 919 |
| BspPI | GGATC | 4 cut(s) | 646, 675, 980, 993 |
| BspQI | GCTCTTC | 1 cut(s) | 606 |
| BspTI | CTTAAG | 2 cut(s) | 760, 962 |
| BsrI | ACTGG | 1 cut(s) | 101 |
| BssMI | GATC | 9 cut(s) | 466, 490, 638, 667, 750, 764, 796, 947, 985 |
| BssNI | GRCGYC | 1 cut(s) | 876 |
| Bst2UI | CCWGG | 1 cut(s) | 1211 |
| Bst4CI | ACNGT | 3 cut(s) | 22, 193, 371 |
| Bst6I | CTCTTC | 3 cut(s) | 246, 606, 1135 |
| BstACI | GRCGYC | 1 cut(s) | 876 |
| BstAFI | CTTAAG | 2 cut(s) | 760, 962 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1052, 1142 |
| BstC8I | GCNNGC | 3 cut(s) | 597, 628, 1279 |
| BstDEI | CTNAG | 6 cut(s) | 48, 417, 516, 892, 1316, 1325 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1208 |
| BstF5I | GGATG | 4 cut(s) | 447, 820, 1057, 1293 |
| BstFNI | CGCG | 2 cut(s) | 804, 1281 |
| BstHHI | GCGC | 1 cut(s) | 1283 |
| BstKTI | GATC | 9 cut(s) | 469, 493, 641, 670, 753, 767, 799, 950, 988 |
| BstMAI | GTCTC | 4 cut(s) | 229, 1041, 1091, 1347 |
| BstMBI | GATC | 9 cut(s) | 466, 490, 638, 667, 750, 764, 796, 947, 985 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 601, 1052, 1142, 1185, 1280 |
| BstNI | CCWGG | 1 cut(s) | 1211 |
| BstNSI | RCATGY | 1 cut(s) | 901 |
| BstSCI | CCNGG | 2 cut(s) | 522, 1209 |
| BstUI | CGCG | 2 cut(s) | 804, 1281 |
| BstV1I | GCAGC | 4 cut(s) | 21, 517, 695, 1261 |
| BstV2I | GAAGAC | 2 cut(s) | 45, 911 |
| BstX2I | RGATCY | 2 cut(s) | 638, 985 |
| BstYI | RGATCY | 2 cut(s) | 638, 985 |
| Bsu15I | ATCGAT | 1 cut(s) | 132 |
| BsuTUI | ATCGAT | 1 cut(s) | 132 |
| BtsCI | GGATG | 4 cut(s) | 447, 820, 1057, 1293 |
| BveI | ACCTGC | 1 cut(s) | 919 |
| Cac8I | GCNNGC | 3 cut(s) | 597, 628, 1279 |
| CfoI | GCGC | 1 cut(s) | 1283 |
| Cfr13I | GGNCC | 2 cut(s) | 997, 1121 |
| ClaI | ATCGAT | 1 cut(s) | 132 |
| CseI | GACGC | 1 cut(s) | 1108 |
| Csp6I | GTAC | 2 cut(s) | 283, 864 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 379, 414 |
| CviAII | CATG | 5 cut(s) | 119, 898, 928, 980, 1069 |
| CviQI | GTAC | 2 cut(s) | 283, 864 |
| DdeI | CTNAG | 6 cut(s) | 48, 417, 516, 892, 1316, 1325 |
| DpnI | GATC | 9 cut(s) | 468, 492, 640, 669, 752, 766, 798, 949, 987 |
| DpnII | GATC | 9 cut(s) | 466, 490, 638, 667, 750, 764, 796, 947, 985 |
| DriI | GACNNNNNGTC | 1 cut(s) | 504 |
| Eam1104I | CTCTTC | 3 cut(s) | 246, 606, 1135 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 504 |
| EarI | CTCTTC | 3 cut(s) | 246, 606, 1135 |
| Ecl136II | GAGCTC | 2 cut(s) | 616, 626 |
| Eco24I | GRGCYC | 2 cut(s) | 618, 628 |
| Eco47I | GGWCC | 2 cut(s) | 997, 1121 |
| Eco53kI | GAGCTC | 2 cut(s) | 616, 626 |
| Eco57I | CTGAAG | 4 cut(s) | 49, 144, 1010, 1116 |
| Eco88I | CYCGRG | 1 cut(s) | 1094 |
| EcoICRI | GAGCTC | 2 cut(s) | 616, 626 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1208 |
| EcoRI | GAATTC | 2 cut(s) | 775, 1254 |
| EcoRII | CCWGG | 1 cut(s) | 1209 |
| EcoT22I | ATGCAT | 1 cut(s) | 1057 |
| EcoT38I | GRGCYC | 2 cut(s) | 618, 628 |
| Esp3I | CGTCTC | 2 cut(s) | 1041, 1091 |
| FaeI | CATG | 5 cut(s) | 122, 901, 931, 983, 1072 |
| FaqI | GGGAC | 1 cut(s) | 307 |
| FatI | CATG | 5 cut(s) | 118, 897, 927, 979, 1068 |
| FauNDI | CATATG | 3 cut(s) | 562, 885, 1161 |
| FbaI | TGATCA | 2 cut(s) | 490, 750 |
| FblI | GTMKAC | 1 cut(s) | 508 |
| Fnu4HI | GCNGC | 4 cut(s) | 10, 531, 684, 1275 |
| FokI | GGATG | 4 cut(s) | 454, 827, 1064, 1280 |
| FriOI | GRGCYC | 2 cut(s) | 618, 628 |
| Fsp4HI | GCNGC | 4 cut(s) | 10, 531, 684, 1275 |
| FspBI | CTAG | 6 cut(s) | 278, 486, 534, 605, 809, 1350 |
| GlaI | GCGC | 1 cut(s) | 1282 |
| GluI | GCNGC | 4 cut(s) | 10, 531, 684, 1275 |
| HapII | CCGG | 2 cut(s) | 523, 687 |
| HgaI | GACGC | 1 cut(s) | 1108 |
| HhaI | GCGC | 1 cut(s) | 1283 |
| Hin1I | GRCGYC | 1 cut(s) | 876 |
| Hin1II | CATG | 5 cut(s) | 122, 901, 931, 983, 1072 |
| Hin6I | GCGC | 1 cut(s) | 1281 |
| HinP1I | GCGC | 1 cut(s) | 1281 |
| HincII | GTYRAC | 3 cut(s) | 374, 509, 874 |
| HindII | GTYRAC | 3 cut(s) | 374, 509, 874 |
| HinfI | GANTC | 4 cut(s) | 344, 415, 588, 826 |
| HpaII | CCGG | 2 cut(s) | 523, 687 |
| HphI | GGTGA | 3 cut(s) | 107, 800, 1252 |
| Hpy166II | GTNNAC | 5 cut(s) | 283, 328, 374, 509, 874 |
| Hpy188I | TCNGA | 4 cut(s) | 68, 466, 519, 955 |
| Hpy188III | TCNNGA | 5 cut(s) | 35, 83, 1094, 1096, 1193 |
| Hpy8I | GTNNAC | 5 cut(s) | 283, 328, 374, 509, 874 |
| Hpy99I | CGWCG | 2 cut(s) | 184, 510 |
| HpyAV | CCTTC | 4 cut(s) | 236, 724, 1034, 1214 |
| HpyCH4III | ACNGT | 3 cut(s) | 22, 193, 371 |
| HpyCH4IV | ACGT | 3 cut(s) | 182, 724, 876 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 599, 1020, 1055, 1145, 1240 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 601, 1052, 1142, 1185, 1280 |
| HpyF3I | CTNAG | 6 cut(s) | 48, 417, 516, 892, 1316, 1325 |
| HpySE526I | ACGT | 3 cut(s) | 182, 724, 876 |
| Hsp92I | GRCGYC | 1 cut(s) | 876 |
| Hsp92II | CATG | 5 cut(s) | 122, 901, 931, 983, 1072 |
| HspAI | GCGC | 1 cut(s) | 1281 |
| Ksp22I | TGATCA | 2 cut(s) | 490, 750 |
| Kzo9I | GATC | 9 cut(s) | 466, 490, 638, 667, 750, 764, 796, 947, 985 |
| LguI | GCTCTTC | 1 cut(s) | 606 |
| Lsp1109I | GCAGC | 4 cut(s) | 21, 517, 695, 1261 |
| LweI | GCATC | 3 cut(s) | 432, 805, 1042 |
| MaeI | CTAG | 6 cut(s) | 278, 486, 534, 605, 809, 1350 |
| MaeII | ACGT | 3 cut(s) | 182, 724, 876 |
| MaeIII | GTNAC | 5 cut(s) | 148, 788, 827, 957, 1059 |
| MalI | GATC | 9 cut(s) | 468, 492, 640, 669, 752, 766, 798, 949, 987 |
| MboI | GATC | 9 cut(s) | 466, 490, 638, 667, 750, 764, 796, 947, 985 |
| MboII | GAAGA | 9 cut(s) | 45, 55, 134, 263, 623, 746, 916, 1098, 1122 |
| MflI | RGATCY | 2 cut(s) | 638, 985 |
| MhlI | GDGCHC | 3 cut(s) | 618, 628, 1324 |
| MluCI | AATT | 5 cut(s) | 457, 710, 775, 858, 1254 |
| MluI | ACGCGT | 1 cut(s) | 802 |
| MlyI | GAGTC | 2 cut(s) | 409, 835 |
| MmeI | TCCRAC | 1 cut(s) | 707 |
| Mph1103I | ATGCAT | 1 cut(s) | 1057 |
| MseI | TTAA | 3 cut(s) | 137, 761, 963 |
| MslI | CAYNNNNRTG | 1 cut(s) | 834 |
| MspA1I | CMGCKG | 1 cut(s) | 665 |
| MspCI | CTTAAG | 2 cut(s) | 760, 962 |
| MspI | CCGG | 2 cut(s) | 523, 687 |
| MspR9I | CCNGG | 2 cut(s) | 524, 1211 |
| MvaI | CCWGG | 1 cut(s) | 1211 |
| MvnI | CGCG | 2 cut(s) | 804, 1281 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 601, 1052, 1142, 1185, 1280 |
| NciI | CCSGG | 1 cut(s) | 524 |
| NdeI | CATATG | 3 cut(s) | 562, 885, 1161 |
| NdeII | GATC | 9 cut(s) | 466, 490, 638, 667, 750, 764, 796, 947, 985 |
| NlaIII | CATG | 5 cut(s) | 122, 901, 931, 983, 1072 |
| NlaIV | GGNNCC | 3 cut(s) | 977, 987, 1122 |
| NmeAIII | GCCGAG | 2 cut(s) | 940, 1291 |
| NmuCI | GTSAC | 4 cut(s) | 148, 788, 827, 1059 |
| NsiI | ATGCAT | 1 cut(s) | 1057 |
| NspI | RCATGY | 1 cut(s) | 901 |
| PaeR7I | CTCGAG | 1 cut(s) | 1094 |
| PaqCI | CACCTGC | 1 cut(s) | 919 |
| PciSI | GCTCTTC | 1 cut(s) | 606 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 801 |
| PfeI | GAWTC | 2 cut(s) | 344, 588 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 107 |
| PkrI | GCNGC | 4 cut(s) | 11, 532, 685, 1276 |
| PleI | GAGTC | 2 cut(s) | 409, 834 |
| PpsI | GAGTC | 2 cut(s) | 409, 834 |
| Psp124BI | GAGCTC | 2 cut(s) | 618, 628 |
| Psp6I | CCWGG | 1 cut(s) | 1209 |
| PspGI | CCWGG | 1 cut(s) | 1209 |
| PspN4I | GGNNCC | 3 cut(s) | 977, 987, 1122 |
| PspPI | GGNCC | 2 cut(s) | 997, 1121 |
| PsuI | RGATCY | 2 cut(s) | 638, 985 |
| RsaI | GTAC | 2 cut(s) | 284, 865 |
| RsaNI | GTAC | 2 cut(s) | 283, 864 |
| RseI | CAYNNNNRTG | 1 cut(s) | 834 |
| SacI | GAGCTC | 2 cut(s) | 618, 628 |
| SalI | GTCGAC | 1 cut(s) | 507 |
| SapI | GCTCTTC | 1 cut(s) | 606 |
| SaqAI | TTAA | 3 cut(s) | 137, 761, 963 |
| SatI | GCNGC | 4 cut(s) | 10, 531, 684, 1275 |
| Sau3AI | GATC | 9 cut(s) | 466, 490, 638, 667, 750, 764, 796, 947, 985 |
| Sau96I | GGNCC | 2 cut(s) | 997, 1121 |
| SchI | GAGTC | 2 cut(s) | 409, 835 |
| ScrFI | CCNGG | 2 cut(s) | 524, 1211 |
| SduI | GDGCHC | 3 cut(s) | 618, 628, 1324 |
| SfaNI | GCATC | 3 cut(s) | 432, 805, 1042 |
| Sfr274I | CTCGAG | 1 cut(s) | 1094 |
| SinI | GGWCC | 2 cut(s) | 997, 1121 |
| SlaI | CTCGAG | 1 cut(s) | 1094 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 834 |
| SmlI | CTYRAG | 6 cut(s) | 83, 226, 575, 760, 962, 1094 |
| SmoI | CTYRAG | 6 cut(s) | 83, 226, 575, 760, 962, 1094 |
| SpeI | ACTAGT | 1 cut(s) | 277 |
| Sse9I | AATT | 5 cut(s) | 457, 710, 775, 858, 1254 |
| SsiI | CCGC | 1 cut(s) | 665 |
| SspI | AATATT | 1 cut(s) | 843 |
| SspMI | CTAG | 6 cut(s) | 278, 486, 534, 605, 809, 1350 |
| SstI | GAGCTC | 2 cut(s) | 618, 628 |
| StyD4I | CCNGG | 2 cut(s) | 522, 1209 |
| TaaI | ACNGT | 3 cut(s) | 22, 193, 371 |
| TaiI | ACGT | 3 cut(s) | 185, 727, 879 |
| TaqI | TCGA | 4 cut(s) | 132, 508, 586, 1095 |
| TasI | AATT | 5 cut(s) | 457, 710, 775, 858, 1254 |
| TfiI | GAWTC | 2 cut(s) | 344, 588 |
| Tru1I | TTAA | 3 cut(s) | 137, 761, 963 |
| Tru9I | TTAA | 3 cut(s) | 137, 761, 963 |
| TseFI | GTSAC | 4 cut(s) | 148, 788, 827, 1059 |
| TseI | GCWGC | 4 cut(s) | 9, 530, 683, 1274 |
| Tsp45I | GTSAC | 4 cut(s) | 148, 788, 827, 1059 |
| TspDTI | ATGAA | 6 cut(s) | 83, 135, 693, 852, 872, 916 |
| TspGWI | ACGGA | 1 cut(s) | 1010 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 107 |
| Vha464I | CTTAAG | 2 cut(s) | 760, 962 |
| VpaK11BI | GGWCC | 2 cut(s) | 997, 1121 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1208 |
| XapI | RAATTY | 2 cut(s) | 775, 1254 |
| XceI | RCATGY | 1 cut(s) | 901 |
| XhoI | CTCGAG | 1 cut(s) | 1094 |
| XmiI | GTMKAC | 1 cut(s) | 508 |
| XspI | CTAG | 6 cut(s) | 278, 486, 534, 605, 809, 1350 |
| ZraI | GACGTC | 1 cut(s) | 877 |
| Zsp2I | ATGCAT | 1 cut(s) | 1057 |