Rh4BG350700
BZIP Family

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Reverse (-)
51193022 .. 51196327
3306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG350700.1

Sequence Viewer

Length: 1074 bp
ATGTACCACCATCACAAAGGAACGACGTCGTCGGGTAACAACGGCCACTTTGAGAACTGGGGTGATTCGGCTGTGGCGGAGCACAGTCAGCAGACCGACACCTCTACCGATATTGAAACCGAAGACAAAAACCATCTTCGTGGAGCTCAGCATGGAGCACTAGTAGTAGTGGATTCCAATTCCATAGAGCAGGCTAATGGAAGAACTGGTGACCAAAAGGCACTACGTCGGTTGGCTCAGAATCGAGAAGCAGCAAGGAAGAGTCGACTTAGGAAGAAAGCATATGTCCAGCAGCTGGAGAATAGTAGAGTAAAGCTTTCGCAACTTGAGCAAGAGCTTCAGCGAGCACGCCAGCAGGGTATGTTGGTTGGACTTTCAGGGGATCATGGTCATTCTACGGTGGGAAGTGGGGCCTTAACATTTGACTTTGAGTATGCACGCTGGCTTGATGAACATCAGCGTCTAATACATGAGCTGCGATCGGCTATGAATTCTCATCTGGTGGATAATGGACTGAAAATTCATGTTGATAGTGTTATGACACACTATGATGAGATATTCAGGTCAAAGAGCGTGGCTGCCAAGGCTGATGTATTCCACATGCTTTCTGGCATGTGGAAGACACCTGCCGAAAGGTGTTTTATGTGGTTGGGAGGATTCCGCTCCTCTGAACTTCTCAAGATACTTGGGAACCAACTTGAGCCTTTAACAGATCAGCAGTTGATGGGGATATGCAATCTACAGCAATCTTCCCAACAGACTGAAGATGCCTTATCACAAGGGATGGAAGCTTTGCAACAATCGCTTGTAGACACGCTCTCCTCAACTACTCATGGCCCTACTGTTTCAGCAGATGTTGCCGACTACATGGGCCAAATGGCAATTGCTATGGGCAAGCTTGCCACACTGCAGGACTTCCTTATCCAGGCTGACCTATTGAGGCAGCAAACTCTGCAACAATTGCATCGTATTCTGACCACTCGACAAACTGCTCGTGCCCTTCTCGTTATCAACGATTACTTCTCGCGTCTCCGAGCGCTTAGTTCTTTGTGGTTGGCCCGCCCTAGGGACTAA

Protein Analysis

357

Amino Acids

40.1

Weight (kDa)

6.79

Isoelectric Point (pI)

48.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_1 PF00170 73 - 113 9e-07 bZIP transcription factor
DOG1 PF14144 156 - 229 6.2e-31 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 634
AatII GACGTC 1 cut(s) 29
Acc36I ACCTGC 1 cut(s) 634
AccB7I CCANNNNNTGG 1 cut(s) 295
AccBSI CCGCTC 1 cut(s) 663
AccI GTMKAC 2 cut(s) 265, 810
AccII CGCG 1 cut(s) 1027
AciI CCGC 3 cut(s) 77, 661, 1060
AclWI GGATC 1 cut(s) 390
AcoI YGGCCR 1 cut(s) 43
AcsI RAATTY 2 cut(s) 490, 519
AcuI CTGAAG 2 cut(s) 323, 783
AcyI GRCGYC 1 cut(s) 26
AfaI GTAC 1 cut(s) 5
AfeI AGCGCT 1 cut(s) 1038
AfiI CCNNNNNNNGG 4 cut(s) 295, 925, 1065, 1066
AgsI TTSAA 1 cut(s) 116
AhlI ACTAGT 1 cut(s) 160
AjnI CCWGG 1 cut(s) 924
AluBI AGCT 7 cut(s) 146, 295, 316, 337, 475, 791, 898
AluI AGCT 7 cut(s) 146, 295, 316, 337, 475, 791, 898
Alw21I GWGCWC 4 cut(s) 84, 148, 160, 349
Alw26I GTCTC 1 cut(s) 1034
AlwI GGATC 1 cut(s) 390
AlwNI CAGNNNCTG 1 cut(s) 295
Aor51HI AGCGCT 1 cut(s) 1038
AoxI GGCC 5 cut(s) 43, 411, 835, 871, 1056
ApeKI GCWGC 5 cut(s) 251, 292, 475, 578, 943
ApoI RAATTY 2 cut(s) 490, 519
AspA2I CCTAGG 1 cut(s) 1064
AspLEI GCGC 1 cut(s) 1039
AspS9I GGNCC 4 cut(s) 411, 836, 871, 1057
AsuHPI GGTGA 2 cut(s) 74, 221
AvrII CCTAGG 1 cut(s) 1064
BaeGI GKGCMC 1 cut(s) 1000
BanII GRGCYC 1 cut(s) 148
BauI CACGAG 1 cut(s) 993
BbsI GAAGAC 2 cut(s) 129, 626
Bbv12I GWGCWC 4 cut(s) 84, 148, 160, 349
BbvI GCAGC 5 cut(s) 263, 304, 462, 565, 955
BccI CCATC 4 cut(s) 18, 141, 718, 778
BceAI ACGGC 1 cut(s) 58
BciT130I CCWGG 1 cut(s) 926
BcoDI GTCTC 1 cut(s) 1034
BcuI ACTAGT 1 cut(s) 160
BfaI CTAG 2 cut(s) 161, 1065
BfmI CTRYAG 2 cut(s) 740, 908
BfoI RGCGCY 1 cut(s) 1040
BfuAI ACCTGC 1 cut(s) 634
BisI GCNGC 5 cut(s) 252, 293, 476, 579, 944
BlnI CCTAGG 1 cut(s) 1064
BlpI GCTNAGC 1 cut(s) 147
BlsI GCNGC 5 cut(s) 253, 294, 477, 580, 945
Bme1390I CCNGG 1 cut(s) 926
BmgT120I GGNCC 4 cut(s) 411, 836, 871, 1057
BmiI GGNNCC 2 cut(s) 412, 692
BmrFI CCNGG 1 cut(s) 926
BmrI ACTGGG 1 cut(s) 67
BmsI GCATC 2 cut(s) 757, 973
BmuI ACTGGG 1 cut(s) 67
BpiI GAAGAC 2 cut(s) 129, 626
BpmI CTGGAG 1 cut(s) 317
Bpu1102I GCTNAGC 1 cut(s) 147
BpuEI CTTGAG 3 cut(s) 347, 662, 719
BsaBI GATNNNNATC 1 cut(s) 453
BsaHI GRCGYC 1 cut(s) 26
BsaJI CCNNGG 2 cut(s) 582, 1064
BsaXI ACNNNNNCTCC 4 cut(s) 147, 177, 803, 833
Bsc4I CCNNNNNNNGG 4 cut(s) 295, 925, 1065, 1066
Bse1I ACTGG 2 cut(s) 62, 211
Bse8I GATNNNNATC 1 cut(s) 453
BseBI CCWGG 1 cut(s) 926
BseDI CCNNGG 2 cut(s) 582, 1064
BseGI GGATG 1 cut(s) 789
BseJI GATNNNNATC 1 cut(s) 453
BseLI CCNNNNNNNGG 4 cut(s) 295, 925, 1065, 1066
BseMII CTCAG 2 cut(s) 161, 251
BseNI ACTGG 2 cut(s) 62, 211
BseRI GAGGAG 2 cut(s) 655, 811
BseSI GKGCMC 1 cut(s) 1000
BseXI GCAGC 5 cut(s) 263, 304, 462, 565, 955
Bsh1236I CGCG 1 cut(s) 1027
Bsh1285I CGRYCG 1 cut(s) 482
BshFI GGCC 5 cut(s) 45, 413, 837, 873, 1058
BsiEI CGRYCG 1 cut(s) 482
BsiHKAI GWGCWC 4 cut(s) 84, 148, 160, 349
BslI CCNNNNNNNGG 4 cut(s) 295, 925, 1065, 1066
BsmAI GTCTC 1 cut(s) 1034
BsmBI CGTCTC 1 cut(s) 1034
BsnI GGCC 5 cut(s) 45, 413, 837, 873, 1058
Bsp1286I GDGCHC 5 cut(s) 84, 148, 160, 349, 1000
Bsp143I GATC 3 cut(s) 382, 479, 712
Bsp1720I GCTNAGC 1 cut(s) 147
BspACI CCGC 3 cut(s) 77, 661, 1060
BspANI GGCC 5 cut(s) 45, 413, 837, 873, 1058
BspCNI CTCAG 2 cut(s) 160, 250
BspFNI CGCG 1 cut(s) 1027
BspLI GGNNCC 2 cut(s) 412, 692
BspMAI CTGCAG 1 cut(s) 912
BspMI ACCTGC 1 cut(s) 634
BspPI GGATC 1 cut(s) 390
BsrBI CCGCTC 1 cut(s) 663
BsrI ACTGG 2 cut(s) 62, 211
BssECI CCNNGG 2 cut(s) 582, 1064
BssMI GATC 3 cut(s) 382, 479, 712
BssNI GRCGYC 1 cut(s) 26
BssSI CACGAG 1 cut(s) 993
BssT1I CCWWGG 2 cut(s) 582, 1064
Bst2BI CACGAG 1 cut(s) 993
Bst2UI CCWGG 1 cut(s) 926
Bst4CI ACNGT 3 cut(s) 86, 400, 844
Bst6I CTCTTC 1 cut(s) 254
BstACI GRCGYC 1 cut(s) 26
BstAPI GCANNNNNTGC 3 cut(s) 857, 952, 961
BstC8I GCNNGC 9 cut(s) 192, 345, 349, 353, 439, 443, 896, 900, 1060
BstDEI CTNAG 4 cut(s) 147, 237, 269, 1040
BstEII GGTNACC 1 cut(s) 209
BstENI CCTNNNNNAGG 1 cut(s) 923
BstF5I GGATG 1 cut(s) 789
BstFNI CGCG 1 cut(s) 1027
BstH2I RGCGCY 1 cut(s) 1040
BstHHI GCGC 1 cut(s) 1039
BstKTI GATC 3 cut(s) 385, 482, 715
BstMAI GTCTC 1 cut(s) 1034
BstMBI GATC 3 cut(s) 382, 479, 712
BstMCI CGRYCG 1 cut(s) 482
BstMWI GCNNNNNNNGC 7 cut(s) 88, 328, 584, 802, 857, 952, 961
BstNI CCWGG 1 cut(s) 926
BstNSI RCATGY 2 cut(s) 604, 616
BstPI GGTNACC 1 cut(s) 209
BstSCI CCNGG 1 cut(s) 924
BstSFI CTRYAG 2 cut(s) 740, 908
BstSLI GKGCMC 1 cut(s) 1000
BstUI CGCG 1 cut(s) 1027
BstV1I GCAGC 5 cut(s) 263, 304, 462, 565, 955
BstV2I GAAGAC 2 cut(s) 129, 626
BstXI CCANNNNNNTGG 1 cut(s) 140
BsuRI GGCC 5 cut(s) 45, 413, 837, 873, 1058
BtsCI GGATG 1 cut(s) 789
BtsI GCAGTG 1 cut(s) 905
BtsIMutI CAGTG 1 cut(s) 905
BveI ACCTGC 1 cut(s) 634
Cac8I GCNNGC 9 cut(s) 192, 345, 349, 353, 439, 443, 896, 900, 1060
CaiI CAGNNNCTG 1 cut(s) 295
CfoI GCGC 1 cut(s) 1039
Cfr13I GGNCC 4 cut(s) 411, 836, 871, 1057
CseI GACGC 2 cut(s) 449, 1016
Csp6I GTAC 1 cut(s) 4
CspCI CAANNNNNGTGG 2 cut(s) 555, 590
CviAII CATG 8 cut(s) 152, 386, 470, 524, 601, 613, 833, 868
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 4 cut(s) 147, 237, 269, 1040
DpnI GATC 3 cut(s) 384, 481, 714
DpnII GATC 3 cut(s) 382, 479, 712
EaeI YGGCCR 1 cut(s) 43
Eam1104I CTCTTC 1 cut(s) 254
EarI CTCTTC 1 cut(s) 254
EciI GGCGGA 1 cut(s) 92
Ecl136II GAGCTC 1 cut(s) 146
Eco130I CCWWGG 2 cut(s) 582, 1064
Eco24I GRGCYC 1 cut(s) 148
Eco47III AGCGCT 1 cut(s) 1038
Eco53kI GAGCTC 1 cut(s) 146
Eco57I CTGAAG 2 cut(s) 323, 783
Eco91I GGTNACC 1 cut(s) 209
EcoICRI GAGCTC 1 cut(s) 146
EcoNI CCTNNNNNAGG 1 cut(s) 923
EcoO109I RGGNCCY 1 cut(s) 411
EcoO65I GGTNACC 1 cut(s) 209
EcoRI GAATTC 1 cut(s) 490
EcoRII CCWGG 1 cut(s) 924
EcoT14I CCWWGG 2 cut(s) 582, 1064
EcoT38I GRGCYC 1 cut(s) 148
ErhI CCWWGG 2 cut(s) 582, 1064
Esp3I CGTCTC 1 cut(s) 1034
FaeI CATG 8 cut(s) 155, 389, 473, 527, 604, 616, 836, 871
FatI CATG 8 cut(s) 151, 385, 469, 523, 600, 612, 832, 867
FauI CCCGC 1 cut(s) 1067
FauNDI CATATG 1 cut(s) 283
FblI GTMKAC 2 cut(s) 265, 810
Fnu4HI GCNGC 5 cut(s) 252, 293, 476, 579, 944
FokI GGATG 1 cut(s) 796
FriOI GRGCYC 1 cut(s) 148
Fsp4HI GCNGC 5 cut(s) 252, 293, 476, 579, 944
FspBI CTAG 2 cut(s) 161, 1065
GlaI GCGC 1 cut(s) 1038
GluI GCNGC 5 cut(s) 252, 293, 476, 579, 944
GsuI CTGGAG 1 cut(s) 317
HaeII RGCGCY 1 cut(s) 1040
HaeIII GGCC 5 cut(s) 45, 413, 837, 873, 1058
HgaI GACGC 2 cut(s) 449, 1016
HhaI GCGC 1 cut(s) 1039
Hin1I GRCGYC 1 cut(s) 26
Hin1II CATG 8 cut(s) 155, 389, 473, 527, 604, 616, 836, 871
Hin6I GCGC 1 cut(s) 1037
HinP1I GCGC 1 cut(s) 1037
HincII GTYRAC 1 cut(s) 266
HindII GTYRAC 1 cut(s) 266
HindIII AAGCTT 3 cut(s) 314, 789, 896
HinfI GANTC 5 cut(s) 65, 173, 241, 262, 657
HphI GGTGA 2 cut(s) 74, 221
Hpy166II GTNNAC 2 cut(s) 266, 811
Hpy188I TCNGA 4 cut(s) 240, 670, 975, 1034
Hpy188III TCNNGA 2 cut(s) 245, 679
Hpy8I GTNNAC 2 cut(s) 266, 811
Hpy99I CGWCG 4 cut(s) 28, 31, 34, 231
HpyAV CCTTC 1 cut(s) 1010
HpyCH4III ACNGT 3 cut(s) 86, 400, 844
HpyCH4IV ACGT 2 cut(s) 26, 226
HpyCH4V TGCA 6 cut(s) 437, 735, 796, 910, 955, 964
HpyF10VI GCNNNNNNNGC 7 cut(s) 88, 328, 584, 802, 857, 952, 961
HpyF3I CTNAG 4 cut(s) 147, 237, 269, 1040
HpySE526I ACGT 2 cut(s) 26, 226
Hsp92I GRCGYC 1 cut(s) 26
Hsp92II CATG 8 cut(s) 155, 389, 473, 527, 604, 616, 836, 871
HspAI GCGC 1 cut(s) 1037
Kzo9I GATC 3 cut(s) 382, 479, 712
LmnI GCTCC 4 cut(s) 79, 143, 155, 668
Lsp1109I GCAGC 5 cut(s) 263, 304, 462, 565, 955
LweI GCATC 2 cut(s) 757, 973
MaeI CTAG 2 cut(s) 161, 1065
MaeII ACGT 2 cut(s) 26, 226
MaeIII GTNAC 2 cut(s) 35, 209
MalI GATC 3 cut(s) 384, 481, 714
MbiI CCGCTC 1 cut(s) 663
MboI GATC 3 cut(s) 382, 479, 712
MboII GAAGA 8 cut(s) 128, 134, 213, 271, 286, 631, 741, 776
MfeI CAATTG 2 cut(s) 882, 959
MhlI GDGCHC 5 cut(s) 84, 148, 160, 349, 1000
MluCI AATT 5 cut(s) 178, 490, 519, 882, 959
MlyI GAGTC 1 cut(s) 271
MmeI TCCRAC 1 cut(s) 349
MnlI CCTC 5 cut(s) 112, 647, 676, 832, 933
MseI TTAA 2 cut(s) 416, 707
MslI CAYNNNNRTG 2 cut(s) 138, 549
MspA1I CMGCKG 1 cut(s) 295
MspR9I CCNGG 1 cut(s) 926
MunI CAATTG 2 cut(s) 882, 959
MvaI CCWGG 1 cut(s) 926
MvnI CGCG 1 cut(s) 1027
MwoI GCNNNNNNNGC 7 cut(s) 88, 328, 584, 802, 857, 952, 961
NdeI CATATG 1 cut(s) 283
NdeII GATC 3 cut(s) 382, 479, 712
NlaIII CATG 8 cut(s) 155, 389, 473, 527, 604, 616, 836, 871
NlaIV GGNNCC 2 cut(s) 412, 692
NmuCI GTSAC 1 cut(s) 209
NspI RCATGY 2 cut(s) 604, 616
PaqCI CACCTGC 1 cut(s) 634
PcsI WCGNNNNNNNCGW 1 cut(s) 1011
PfeI GAWTC 4 cut(s) 65, 173, 241, 657
PflFI GACNNNGTC 1 cut(s) 28
PflMI CCANNNNNTGG 1 cut(s) 295
PkrI GCNGC 5 cut(s) 253, 294, 477, 580, 945
Ple19I CGATCG 1 cut(s) 482
PleI GAGTC 1 cut(s) 270
PpsI GAGTC 1 cut(s) 270
Psp124BI GAGCTC 1 cut(s) 148
Psp6I CCWGG 1 cut(s) 924
PspEI GGTNACC 1 cut(s) 209
PspGI CCWGG 1 cut(s) 924
PspN4I GGNNCC 2 cut(s) 412, 692
PspPI GGNCC 4 cut(s) 411, 836, 871, 1057
PstI CTGCAG 1 cut(s) 912
PstNI CAGNNNCTG 1 cut(s) 295
PsyI GACNNNGTC 1 cut(s) 28
PvuI CGATCG 1 cut(s) 482
PvuII CAGCTG 1 cut(s) 295
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 2 cut(s) 138, 549
SacI GAGCTC 1 cut(s) 148
SalI GTCGAC 1 cut(s) 264
SaqAI TTAA 2 cut(s) 416, 707
SatI GCNGC 5 cut(s) 252, 293, 476, 579, 944
Sau3AI GATC 3 cut(s) 382, 479, 712
Sau96I GGNCC 4 cut(s) 411, 836, 871, 1057
SchI GAGTC 1 cut(s) 271
ScrFI CCNGG 1 cut(s) 926
SduI GDGCHC 5 cut(s) 84, 148, 160, 349, 1000
SfaNI GCATC 2 cut(s) 757, 973
SfcI CTRYAG 2 cut(s) 740, 908
SmiMI CAYNNNNRTG 2 cut(s) 138, 549
SmlI CTYRAG 3 cut(s) 326, 677, 698
SmoI CTYRAG 3 cut(s) 326, 677, 698
SpeI ACTAGT 1 cut(s) 160
Sse9I AATT 5 cut(s) 178, 490, 519, 882, 959
SsiI CCGC 3 cut(s) 77, 661, 1060
SspMI CTAG 2 cut(s) 161, 1065
SstI GAGCTC 1 cut(s) 148
StyD4I CCNGG 1 cut(s) 924
StyI CCWWGG 2 cut(s) 582, 1064
TaaI ACNGT 3 cut(s) 86, 400, 844
TaiI ACGT 2 cut(s) 29, 229
TaqI TCGA 3 cut(s) 244, 265, 982
TaqII GACCGA 1 cut(s) 110
TasI AATT 5 cut(s) 178, 490, 519, 882, 959
TfiI GAWTC 4 cut(s) 65, 173, 241, 657
Tru1I TTAA 2 cut(s) 416, 707
Tru9I TTAA 2 cut(s) 416, 707
TscAI CASTG 1 cut(s) 912
TseFI GTSAC 1 cut(s) 209
TseI GCWGC 5 cut(s) 251, 292, 475, 578, 943
Tsp45I GTSAC 1 cut(s) 209
TspDTI ATGAA 3 cut(s) 465, 503, 512
TspRI CASTG 1 cut(s) 912
Tth111I GACNNNGTC 1 cut(s) 28
Van91I CCANNNNNTGG 1 cut(s) 295
XagI CCTNNNNNAGG 1 cut(s) 923
XapI RAATTY 2 cut(s) 490, 519
XceI RCATGY 2 cut(s) 604, 616
XcmI CCANNNNNNNNNTGG 1 cut(s) 605
XmaJI CCTAGG 1 cut(s) 1064
XmiI GTMKAC 2 cut(s) 265, 810
XspI CTAG 2 cut(s) 161, 1065
ZraI GACGTC 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.