Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0008955

Physical Location & Seq

Genomic Coordinates Reverse (-)

2490976 .. 2493770

Gene Structure 2795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g04060.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGCAGAGCTTCAAAGCAGCTTCAACCAACCCAGAGTTCTACTCCCACTCGTCCTTCTATTTCAGGGGAGACGACAGTGACCGGAACCAAACGCGTTTTGCGGATCTTGGAGAGCTTGAACAGTCCGCTACCGCCTTCCCTCACGATGATGCTGTTGTTTTATGCCCAAGCGCAGGCTCCATGTTCAGCTTAAAAGCAAACAATGTTAGTGTTGTACCTGATGGCCTGCACTACGGTGCGTTGAACGTTGGGGGATGTTTGGACATAGGCTCCACCATAACCGGAACAGGAGGAGGAGGGGGAGGGTGTGTGGACACAGGACAGCAGCAACCATACATGTACCAGCAGCAGAAAGGAACGACGTCGTCTGGAAATGGACACTTTGAGAATTGGGGTGATAATTCAGCCATGGCTGACAACAGCCAGCAGACTGACACTTCAACGGATGTTGACACCGATGACAAAAACCAACTTCATGGAGTGCAGCATGGAGCACTAGTGGTAGTGGATTCCATGGAGCAGGCAAAGGAAAGAACTGGTGATCAAAAGACGCTACGTAGGCTGGCCCAGAACAGAGAAGCTGCAAGGAAGAGTCGACTAAGGAAGAAAGCATATGTCCAGCAGCTGGAAAATAGTCGACTTAGGCTTTCGCAGCTGGAGCAAGAGCTTCAGCGAGCCCGCCAGCAGGGTATATTTATTGCAAATGGACTTCCAGGGGATTATGGTCATTCAGTGGCAGGAAATGGGGCCTTAACATTTGACTTGGAGTATGCACACTGGCTTGAGGAACATCAGCGGCTAATACACGATATGCGATCAGCTGTGAATTGCCATATGGGAGATAATGAATTGCGGATTCTCGTTGATAGTGTAATGACACATTATGATGAGATATTCAGGTTGAAGAGCATCGCTGCCAAGACTGATGTGTTTCACATGCTCTCTGGCATGTGGCAGACGCCCACTGAAAGGTGTTTTATGTGGTTGGGTGGATTCCGCTCCTCTGAACTTCTCAAGATACTTGGGAACCACCTCGAGCCTTTAACAGATCAATCCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009909 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1 bZIP_2

Protein Analysis

354

Amino Acids

39.07

Weight (kDa)

5.58

Isoelectric Point (pI)

40.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68640
fragaria_vesca	FvH4_4g27750 FvH4_4g27750
malus_domestica	MD13G1044600.v1.1 MD16G1046000.v1.1
prunus_persica	Prupe.1G307300_v2.0.a1 Prupe.1G307300_v2.0.a1 Prupe.1G307300_v2.0.a1 Prupe.1G307300_v2.0.a1 Prupe.1G307300_v2.0.a1
pyrus_communis	pycom13g03950 pycom16g04060
rosa_chinensis	RchiOBHm_Chr4g0435611
rosa_laevigata	RLG00000006577
rosa_multiflora	Rmu_sc0000051.1_g000002
rosa_roxburghii	Rroxscaffold_5G00376840
rosa_rugosa	Rorug04G0287100
rosa_samantha	Rh4AG342400 Rh4BG350700 Rh4CG365400 Rh4DG345000
rosa_wichuraiana	Rw4G029880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	365
AccB7I	CCANNNNNTGG	1 cut(s)	625
AccBSI	CCGCTC	1 cut(s)	999
AccI	GTMKAC	2 cut(s)	595, 637
AccII	CGCG	1 cut(s)	94
AciI	CCGC	7 cut(s)	101, 126, 132, 679, 796, 853, 997
AclI	AACGTT	1 cut(s)	246
AclWI	GGATC	1 cut(s)	111
AcuI	CTGAAG	1 cut(s)	653
AcyI	GRCGYC	2 cut(s)	362, 959
AfaI	GTAC	2 cut(s)	216, 341
AfiI	CCNNNNNNNGG	4 cut(s)	173, 625, 685, 969
AflIII	ACRYGT	2 cut(s)	92, 336
AgsI	TTSAA	6 cut(s)	13, 24, 119, 244, 441, 904
AhlI	ACTAGT	1 cut(s)	496
AjnI	CCWGG	1 cut(s)	712
AjuI	GAANNNNNNNTTGG	2 cut(s)	20, 52
AleI	CACNNNNGTG	1 cut(s)	234
AluBI	AGCT	9 cut(s)	9, 20, 115, 189, 581, 625, 655, 667, 821
AluI	AGCT	9 cut(s)	9, 20, 115, 189, 581, 625, 655, 667, 821
Alw21I	GWGCWC	1 cut(s)	496
Alw26I	GTCTC	1 cut(s)	63
AlwI	GGATC	1 cut(s)	111
AlwNI	CAGNNNCTG	1 cut(s)	625
Ama87I	CYCGRG	1 cut(s)	1034
AoxI	GGCC	3 cut(s)	223, 564, 747
ApeKI	GCWGC	8 cut(s)	17, 325, 346, 484, 581, 622, 652, 914
AspLEI	GCGC	1 cut(s)	173
AspS9I	GGNCC	2 cut(s)	565, 747
AsuHPI	GGTGA	2 cut(s)	407, 551
AvaI	CYCGRG	1 cut(s)	1034
BanII	GRGCYC	1 cut(s)	679
Bbv12I	GWGCWC	1 cut(s)	496
BbvI	GCAGC	8 cut(s)	29, 337, 358, 496, 568, 634, 664, 901
BccI	CCATC	1 cut(s)	215
BciT130I	CCWGG	1 cut(s)	714
BclI	TGATCA	1 cut(s)	541
BcoDI	GTCTC	1 cut(s)	63
BcuI	ACTAGT	1 cut(s)	496
BfaI	CTAG	1 cut(s)	497
BisI	GCNGC	9 cut(s)	18, 326, 347, 485, 582, 623, 653, 797, 915
BlsI	GCNGC	9 cut(s)	19, 327, 348, 486, 583, 624, 654, 798, 916
Bme1390I	CCNGG	1 cut(s)	714
BmeT110I	CYCGRG	1 cut(s)	1034
BmgT120I	GGNCC	2 cut(s)	565, 747
BmiI	GGNNCC	5 cut(s)	86, 178, 271, 748, 1028
BmrFI	CCNGG	1 cut(s)	714
BmsI	GCATC	2 cut(s)	139, 918
BplI	GAGNNNNNCTC	2 cut(s)	26, 58
BpmI	CTGGAG	1 cut(s)	677
BpuEI	CTTGAG	2 cut(s)	803, 998
BsaAI	YACGTR	1 cut(s)	557
BsaHI	GRCGYC	2 cut(s)	362, 959
BsaJI	CCNNGG	3 cut(s)	408, 513, 713
BsaWI	WCCGGW	2 cut(s)	81, 281
BsaXI	ACNNNNNCTCC	6 cut(s)	254, 284, 294, 324, 483, 513
Bsc4I	CCNNNNNNNGG	4 cut(s)	173, 625, 685, 969
Bse1I	ACTGG	3 cut(s)	541, 782, 1056
BseBI	CCWGG	1 cut(s)	714
BseDI	CCNNGG	3 cut(s)	408, 513, 713
BseGI	GGATG	2 cut(s)	260, 451
BseLI	CCNNNNNNNGG	4 cut(s)	173, 625, 685, 969
BseNI	ACTGG	3 cut(s)	541, 782, 1056
BseRI	GAGGAG	3 cut(s)	306, 309, 991
BseXI	GCAGC	8 cut(s)	29, 337, 358, 496, 568, 634, 664, 901
BsgI	GTGCAG	2 cut(s)	212, 503
Bsh1236I	CGCG	1 cut(s)	94
BshFI	GGCC	3 cut(s)	225, 566, 749
BsiHKAI	GWGCWC	1 cut(s)	496
BsiHKCI	CYCGRG	1 cut(s)	1034
BsiSI	CCGG	2 cut(s)	82, 282
BslI	CCNNNNNNNGG	4 cut(s)	173, 625, 685, 969
BsmAI	GTCTC	1 cut(s)	63
BsmBI	CGTCTC	1 cut(s)	63
BsnI	GGCC	3 cut(s)	225, 566, 749
BsoBI	CYCGRG	1 cut(s)	1034
Bsp1286I	GDGCHC	2 cut(s)	496, 679
Bsp143I	GATC	4 cut(s)	103, 541, 815, 1048
Bsp19I	CCATGG	2 cut(s)	408, 513
BspACI	CCGC	7 cut(s)	101, 126, 132, 679, 796, 853, 997
BspANI	GGCC	3 cut(s)	225, 566, 749
BspFNI	CGCG	1 cut(s)	94
BspLI	GGNNCC	5 cut(s)	86, 178, 271, 748, 1028
BspPI	GGATC	1 cut(s)	111
BspQI	GCTCTTC	1 cut(s)	899
BsrBI	CCGCTC	1 cut(s)	999
BsrI	ACTGG	3 cut(s)	541, 782, 1056
BssECI	CCNNGG	3 cut(s)	408, 513, 713
BssMI	GATC	4 cut(s)	103, 541, 815, 1048
BssNI	GRCGYC	2 cut(s)	362, 959
BssT1I	CCWWGG	2 cut(s)	408, 513
Bst2UI	CCWGG	1 cut(s)	714
Bst4CI	ACNGT	3 cut(s)	77, 123, 236
Bst6I	CTCTTC	2 cut(s)	584, 899
BstACI	GRCGYC	2 cut(s)	362, 959
BstBAI	YACGTR	1 cut(s)	557
BstC8I	GCNNGC	8 cut(s)	175, 227, 425, 522, 564, 675, 679, 683
BstDEI	CTNAG	2 cut(s)	599, 641
BstDSI	CCRYGG	2 cut(s)	408, 513
BstF5I	GGATG	2 cut(s)	260, 451
BstFNI	CGCG	1 cut(s)	94
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	4 cut(s)	106, 544, 818, 1051
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	4 cut(s)	103, 541, 815, 1048
BstMWI	GCNNNNNNNGC	3 cut(s)	559, 652, 658
BstNI	CCWGG	1 cut(s)	714
BstNSI	RCATGY	3 cut(s)	340, 940, 952
BstSCI	CCNGG	1 cut(s)	712
BstSNI	TACGTA	1 cut(s)	557
BstUI	CGCG	1 cut(s)	94
BstV1I	GCAGC	8 cut(s)	29, 337, 358, 496, 568, 634, 664, 901
BstX2I	RGATCY	1 cut(s)	103
BstXI	CCANNNNNNTGG	1 cut(s)	476
BstYI	RGATCY	1 cut(s)	103
BsuRI	GGCC	3 cut(s)	225, 566, 749
BtgI	CCRYGG	2 cut(s)	408, 513
BtgZI	GCGATG	1 cut(s)	895
BtsCI	GGATG	2 cut(s)	260, 451
BtsIMutI	CAGTG	4 cut(s)	82, 738, 775, 963
Cac8I	GCNNGC	8 cut(s)	175, 227, 425, 522, 564, 675, 679, 683
CaiI	CAGNNNCTG	1 cut(s)	625
CfoI	GCGC	1 cut(s)	173
Cfr13I	GGNCC	2 cut(s)	565, 747
CseI	GACGC	2 cut(s)	559, 967
Csp6I	GTAC	2 cut(s)	215, 340
CviAII	CATG	8 cut(s)	181, 337, 409, 476, 488, 514, 937, 949
CviQI	GTAC	2 cut(s)	215, 340
DdeI	CTNAG	2 cut(s)	599, 641
DpnI	GATC	4 cut(s)	105, 543, 817, 1050
DpnII	GATC	4 cut(s)	103, 541, 815, 1048
Eam1104I	CTCTTC	2 cut(s)	584, 899
EarI	CTCTTC	2 cut(s)	584, 899
Eco105I	TACGTA	1 cut(s)	557
Eco130I	CCWWGG	2 cut(s)	408, 513
Eco24I	GRGCYC	1 cut(s)	679
Eco57I	CTGAAG	1 cut(s)	653
Eco88I	CYCGRG	1 cut(s)	1034
EcoO109I	RGGNCCY	1 cut(s)	747
EcoRII	CCWGG	1 cut(s)	712
EcoT14I	CCWWGG	2 cut(s)	408, 513
EcoT38I	GRGCYC	1 cut(s)	679
ErhI	CCWWGG	2 cut(s)	408, 513
Esp3I	CGTCTC	1 cut(s)	63
FaeI	CATG	8 cut(s)	184, 340, 412, 479, 491, 517, 940, 952
FatI	CATG	8 cut(s)	180, 336, 408, 475, 487, 513, 936, 948
FauI	CCCGC	1 cut(s)	686
FauNDI	CATATG	2 cut(s)	613, 834
FbaI	TGATCA	1 cut(s)	541
FblI	GTMKAC	2 cut(s)	595, 637
Fnu4HI	GCNGC	9 cut(s)	18, 326, 347, 485, 582, 623, 653, 797, 915
FokI	GGATG	2 cut(s)	267, 458
FriOI	GRGCYC	1 cut(s)	679
Fsp4HI	GCNGC	9 cut(s)	18, 326, 347, 485, 582, 623, 653, 797, 915
FspBI	CTAG	1 cut(s)	497
GlaI	GCGC	1 cut(s)	172
GluI	GCNGC	9 cut(s)	18, 326, 347, 485, 582, 623, 653, 797, 915
GsuI	CTGGAG	1 cut(s)	677
HaeIII	GGCC	3 cut(s)	225, 566, 749
HapII	CCGG	2 cut(s)	82, 282
HgaI	GACGC	2 cut(s)	559, 967
HhaI	GCGC	1 cut(s)	173
Hin1I	GRCGYC	2 cut(s)	362, 959
Hin1II	CATG	8 cut(s)	184, 340, 412, 479, 491, 517, 940, 952
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HincII	GTYRAC	3 cut(s)	451, 596, 638
HindII	GTYRAC	3 cut(s)	451, 596, 638
HinfI	GANTC	4 cut(s)	509, 592, 856, 993
HpaII	CCGG	2 cut(s)	82, 282
HphI	GGTGA	2 cut(s)	407, 551
Hpy166II	GTNNAC	4 cut(s)	313, 451, 596, 638
Hpy188I	TCNGA	1 cut(s)	1006
Hpy188III	TCNNGA	3 cut(s)	143, 369, 1015
Hpy8I	GTNNAC	4 cut(s)	313, 451, 596, 638
Hpy99I	CGWCG	2 cut(s)	364, 367
HpyAV	CCTTC	2 cut(s)	64, 145
HpyCH4III	ACNGT	3 cut(s)	77, 123, 236
HpyCH4IV	ACGT	3 cut(s)	246, 362, 556
HpyCH4V	TGCA	6 cut(s)	4, 229, 484, 584, 701, 773
HpyF10VI	GCNNNNNNNGC	3 cut(s)	559, 652, 658
HpyF3I	CTNAG	2 cut(s)	599, 641
HpySE526I	ACGT	3 cut(s)	246, 362, 556
Hsp92I	GRCGYC	2 cut(s)	362, 959
Hsp92II	CATG	8 cut(s)	184, 340, 412, 479, 491, 517, 940, 952
HspAI	GCGC	1 cut(s)	171
Ksp22I	TGATCA	1 cut(s)	541
Kzo9I	GATC	4 cut(s)	103, 541, 815, 1048
LguI	GCTCTTC	1 cut(s)	899
LmnI	GCTCC	6 cut(s)	182, 275, 491, 517, 658, 1004
Lsp1109I	GCAGC	8 cut(s)	29, 337, 358, 496, 568, 634, 664, 901
LweI	GCATC	2 cut(s)	139, 918
MaeI	CTAG	1 cut(s)	497
MaeII	ACGT	3 cut(s)	246, 362, 556
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	4 cut(s)	105, 543, 817, 1050
MbiI	CCGCTC	1 cut(s)	999
MboI	GATC	4 cut(s)	103, 541, 815, 1048
MboII	GAAGA	3 cut(s)	601, 616, 916
MflI	RGATCY	1 cut(s)	103
MhlI	GDGCHC	2 cut(s)	496, 679
MluCI	AATT	4 cut(s)	388, 400, 826, 848
MluI	ACGCGT	1 cut(s)	92
MlyI	GAGTC	1 cut(s)	601
MnlI	CCTC	8 cut(s)	150, 284, 287, 290, 296, 778, 1012, 1043
MseI	TTAA	4 cut(s)	191, 752, 1043, 1060
MslI	CAYNNNNRTG	3 cut(s)	147, 234, 885
MspA1I	CMGCKG	4 cut(s)	625, 655, 796, 821
MspI	CCGG	2 cut(s)	82, 282
MspR9I	CCNGG	1 cut(s)	714
MvaI	CCWGG	1 cut(s)	714
MvnI	CGCG	1 cut(s)	94
MwoI	GCNNNNNNNGC	3 cut(s)	559, 652, 658
NcoI	CCATGG	2 cut(s)	408, 513
NdeI	CATATG	2 cut(s)	613, 834
NdeII	GATC	4 cut(s)	103, 541, 815, 1048
NlaIII	CATG	8 cut(s)	184, 340, 412, 479, 491, 517, 940, 952
NlaIV	GGNNCC	5 cut(s)	86, 178, 271, 748, 1028
NmuCI	GTSAC	1 cut(s)	77
NspI	RCATGY	3 cut(s)	340, 940, 952
OliI	CACNNNNGTG	1 cut(s)	234
PaeR7I	CTCGAG	1 cut(s)	1034
PciI	ACATGT	1 cut(s)	336
PciSI	GCTCTTC	1 cut(s)	899
PfeI	GAWTC	3 cut(s)	509, 856, 993
PflFI	GACNNNGTC	1 cut(s)	364
PflMI	CCANNNNNTGG	1 cut(s)	625
PkrI	GCNGC	9 cut(s)	19, 327, 348, 486, 583, 624, 654, 798, 916
PleI	GAGTC	1 cut(s)	600
PpsI	GAGTC	1 cut(s)	600
Ppu21I	YACGTR	1 cut(s)	557
PscI	ACATGT	1 cut(s)	336
Psp1406I	AACGTT	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	712
PspGI	CCWGG	1 cut(s)	712
PspN4I	GGNNCC	5 cut(s)	86, 178, 271, 748, 1028
PspPI	GGNCC	2 cut(s)	565, 747
PspXI	VCTCGAGB	1 cut(s)	1034
PstNI	CAGNNNCTG	1 cut(s)	625
PsuI	RGATCY	1 cut(s)	103
PsyI	GACNNNGTC	1 cut(s)	364
PvuII	CAGCTG	3 cut(s)	625, 655, 821
RsaI	GTAC	2 cut(s)	216, 341
RsaNI	GTAC	2 cut(s)	215, 340
RseI	CAYNNNNRTG	3 cut(s)	147, 234, 885
SalI	GTCGAC	2 cut(s)	594, 636
SapI	GCTCTTC	1 cut(s)	899
SaqAI	TTAA	4 cut(s)	191, 752, 1043, 1060
SatI	GCNGC	9 cut(s)	18, 326, 347, 485, 582, 623, 653, 797, 915
Sau3AI	GATC	4 cut(s)	103, 541, 815, 1048
Sau96I	GGNCC	2 cut(s)	565, 747
SchI	GAGTC	1 cut(s)	601
ScrFI	CCNGG	1 cut(s)	714
SduI	GDGCHC	2 cut(s)	496, 679
SfaNI	GCATC	2 cut(s)	139, 918
Sfr274I	CTCGAG	1 cut(s)	1034
SlaI	CTCGAG	1 cut(s)	1034
SmiMI	CAYNNNNRTG	3 cut(s)	147, 234, 885
SmlI	CTYRAG	3 cut(s)	782, 1013, 1034
SmoI	CTYRAG	3 cut(s)	782, 1013, 1034
SnaBI	TACGTA	1 cut(s)	557
SpeI	ACTAGT	1 cut(s)	496
Sse9I	AATT	4 cut(s)	388, 400, 826, 848
SsiI	CCGC	7 cut(s)	101, 126, 132, 679, 796, 853, 997
SspMI	CTAG	1 cut(s)	497
StyD4I	CCNGG	1 cut(s)	712
StyI	CCWWGG	2 cut(s)	408, 513
TaaI	ACNGT	3 cut(s)	77, 123, 236
TaiI	ACGT	3 cut(s)	249, 365, 559
TaqI	TCGA	3 cut(s)	595, 637, 1035
TasI	AATT	4 cut(s)	388, 400, 826, 848
TauI	GCSGC	1 cut(s)	799
TfiI	GAWTC	3 cut(s)	509, 856, 993
Tru1I	TTAA	4 cut(s)	191, 752, 1043, 1060
Tru9I	TTAA	4 cut(s)	191, 752, 1043, 1060
TscAI	CASTG	4 cut(s)	82, 738, 782, 970
TseFI	GTSAC	1 cut(s)	77
TseI	GCWGC	8 cut(s)	17, 325, 346, 484, 581, 622, 652, 914
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	2 cut(s)	464, 861
TspGWI	ACGGA	1 cut(s)	458
TspRI	CASTG	4 cut(s)	82, 738, 782, 970
Tth111I	GACNNNGTC	1 cut(s)	364
Van91I	CCANNNNNTGG	1 cut(s)	625
XceI	RCATGY	3 cut(s)	340, 940, 952
XhoI	CTCGAG	1 cut(s)	1034
XmiI	GTMKAC	2 cut(s)	595, 637
XspI	CTAG	1 cut(s)	497
ZraI	GACGTC	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.