MD16G1046000.v1.1
BZIP Family

transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
3204871 .. 3208631
3761 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1046000.v1.1.491

Sequence Viewer

Length: 1413 bp
ATGCAGAGCTTCAAAGCAGCTTCAACAAACCCAGAGTTCTACTCCCACTCGTCCTTCTATTTCAGGGGAGACGACAGTGACCGGAACCAAACGCGTTTTGCGGATCTTGGAGAGCTTGAACAGTCCGCTACCGCCTTCCCTCCGGATGATGCTGTTGTTTTAAGCCCAAGCGCAGGCTCCATGTTCAGCTTAAAAGCAAACAATGTTAGTGTTGTACCTGATGGCTTGCACTACGGTGCGTTGAACGTTGGGGGTTGTTTGGACATAGGCTCAACCATAACCGGAACAGGAGGAGGAGGAGGGGGAGGGTGTGTGGACACAGTACAGCAGCAACCATACATGTACCAGCAGCAGAAAGGAAGGCCGTCGTCTGGAAATGGACACTTTGAGAATTGGGGTGATAATTCAGCCATGGCTGACAACAGCCAGCAGACTGACACTTCAACGGATGTTGACACCGATGACAAAAACCAACTTCATGGAGTGCAGCATGGAGCACTAGTGGTAGTGGATTCCATGGAGCAGGCAAAGGAAAGAACTGGTGACCAAAAGACGCTACGTAGGCTGGCCCAGAACAGAGAAGCAGCAAGGAAGAGTCGACTAAGGAAGAAAGCATATGTCCAGCAGCTGGAAAATAGTCGACTTAGGCTTTCGCAGCTGGAGCAAGAGCTTCAGCGAGCCCGCCAGCAGGGTATATTTATTACAAATGGACTTCCAGGGGATCATGGTCATTCAGTGGCAGGAAATGGGGCCTTGACATTTGACTTGGAGTATGCACACTGGCTTGAGGAACATCAGCGGCTAATACATGATATGCGATCAGCTGTGAATTGCCATATGGGAGATAATGAATTGCGGATTCTCGTTGATAGTGTAATGACACATTATGATGAGATATTCAGGTTGAAGAGCATCGCTGCCAAGACTGATGTGTTTCACATGCTCTCTGGCATGTGGCAGACGCCCACTGAAAGGTGTTTTATGTGGTTGGGTGGATTCCGCTCCTCCGAACTTCTCAAGATACTTGGGAACCACCTCGAGCCCTTAACAGATCAACAGTTGATGGGAATATGCAATCTGCAGCAATCCTCCCAACAGGCTGAAGATGCCTTGTCACAAGGAATGGAAGCTCTACAACAATCTCTTGTGGAGACACTTTCCTCGGCGAATCATTGCCCCACAGGTTCTGGTAATGTCGCCGACTACATGGGCCAAATGGCAATTGCTATGGGAAAGCTGGCCACACTTGAGAATTTCCTTTACCAGGCTGACCTTTTGAGACAGCAAACTCTGCAACAATTGCATAGGATTCTGACCACTCGCCAAGCAGCTCGTGCCCTTCTTGTCATCAGTGACTACTTCTCTCGTCTCCGAGCACTAAGTTCTTTGTGGCAAGCGCGTCCTAGGGACTAA

Protein Analysis

471

Amino Acids

52.08

Weight (kDa)

5.81

Isoelectric Point (pI)

45.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_1 PF00170 184 - 223 9.5e-07 bZIP transcription factor
DOG1 PF14144 269 - 342 6.7e-31 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 628
AccBSI CCGCTC 1 cut(s) 1002
AccI GTMKAC 2 cut(s) 598, 640
AccII CGCG 2 cut(s) 94, 1399
AccIII TCCGGA 1 cut(s) 142
AciI CCGC 7 cut(s) 101, 126, 132, 682, 799, 856, 1000
AclI AACGTT 1 cut(s) 246
AclWI GGATC 2 cut(s) 111, 729
AcoI YGGCCR 1 cut(s) 1239
AcsI RAATTY 1 cut(s) 1252
AcuI CTGAAG 2 cut(s) 656, 1122
AcyI GRCGYC 1 cut(s) 962
AfaI GTAC 3 cut(s) 216, 324, 344
AfiI CCNNNNNNNGG 6 cut(s) 173, 371, 628, 688, 972, 1264
AflIII ACRYGT 2 cut(s) 92, 339
AgsI TTSAA 6 cut(s) 13, 24, 119, 244, 444, 907
AhlI ACTAGT 1 cut(s) 499
AjnI CCWGG 2 cut(s) 715, 1263
AleI CACNNNNGTG 1 cut(s) 234
Alw21I GWGCWC 2 cut(s) 499, 1378
Alw26I GTCTC 4 cut(s) 63, 1145, 1273, 1373
AlwI GGATC 2 cut(s) 111, 729
AlwNI CAGNNNCTG 2 cut(s) 628, 1187
Ama87I CYCGRG 1 cut(s) 1037
Aor13HI TCCGGA 1 cut(s) 142
AoxI GGCC 5 cut(s) 362, 567, 750, 1210, 1239
ApoI RAATTY 1 cut(s) 1252
AspA2I CCTAGG 1 cut(s) 1403
AspLEI GCGC 2 cut(s) 173, 1399
AspS9I GGNCC 3 cut(s) 568, 750, 1210
AsuHPI GGTGA 2 cut(s) 410, 554
AvaI CYCGRG 1 cut(s) 1037
AvrII CCTAGG 1 cut(s) 1403
BaeGI GKGCMC 1 cut(s) 1339
BalI TGGCCA 1 cut(s) 1241
BanII GRGCYC 2 cut(s) 682, 1044
BauI CACGAG 1 cut(s) 1332
Bbv12I GWGCWC 2 cut(s) 499, 1378
BccI CCATC 2 cut(s) 215, 1057
BceAI ACGGC 1 cut(s) 349
BciT130I CCWGG 2 cut(s) 717, 1265
BcoDI GTCTC 4 cut(s) 63, 1145, 1273, 1373
BcuI ACTAGT 1 cut(s) 499
BfaI CTAG 2 cut(s) 500, 1404
BfmI CTRYAG 1 cut(s) 1079
BlnI CCTAGG 1 cut(s) 1403
Bme1390I CCNGG 2 cut(s) 717, 1265
BmeT110I CYCGRG 1 cut(s) 1037
BmgT120I GGNCC 3 cut(s) 568, 750, 1210
BmiI GGNNCC 4 cut(s) 86, 178, 751, 1031
BmrFI CCNGG 2 cut(s) 717, 1265
BmsI GCATC 3 cut(s) 139, 921, 1096
BplI GAGNNNNNCTC 2 cut(s) 26, 58
BpmI CTGGAG 1 cut(s) 680
BpuEI CTTGAG 3 cut(s) 806, 1001, 1268
BsaAI YACGTR 1 cut(s) 560
BsaHI GRCGYC 1 cut(s) 962
BsaJI CCNNGG 5 cut(s) 411, 516, 716, 1161, 1403
BsaWI WCCGGW 3 cut(s) 81, 142, 281
BsaXI ACNNNNNCTCC 4 cut(s) 297, 327, 486, 516
Bsc4I CCNNNNNNNGG 6 cut(s) 173, 371, 628, 688, 972, 1264
Bse1I ACTGG 2 cut(s) 544, 785
Bse3DI GCAATG 1 cut(s) 1171
BseAI TCCGGA 1 cut(s) 142
BseBI CCWGG 2 cut(s) 717, 1265
BseDI CCNNGG 5 cut(s) 411, 516, 716, 1161, 1403
BseGI GGATG 2 cut(s) 151, 454
BseLI CCNNNNNNNGG 6 cut(s) 173, 371, 628, 688, 972, 1264
BseMI GCAATG 1 cut(s) 1171
BseNI ACTGG 2 cut(s) 544, 785
BseRI GAGGAG 4 cut(s) 306, 309, 312, 994
BseSI GKGCMC 1 cut(s) 1339
BsgI GTGCAG 1 cut(s) 506
Bsh1236I CGCG 2 cut(s) 94, 1399
BshFI GGCC 5 cut(s) 364, 569, 752, 1212, 1241
BsiHKAI GWGCWC 2 cut(s) 499, 1378
BsiHKCI CYCGRG 1 cut(s) 1037
BsiSI CCGG 3 cut(s) 82, 143, 282
BslI CCNNNNNNNGG 6 cut(s) 173, 371, 628, 688, 972, 1264
BsmAI GTCTC 4 cut(s) 63, 1145, 1273, 1373
BsmBI CGTCTC 2 cut(s) 63, 1373
BsnI GGCC 5 cut(s) 364, 569, 752, 1212, 1241
BsoBI CYCGRG 1 cut(s) 1037
Bsp1286I GDGCHC 5 cut(s) 499, 682, 1044, 1339, 1378
Bsp13I TCCGGA 1 cut(s) 142
Bsp143I GATC 4 cut(s) 103, 721, 818, 1051
Bsp19I CCATGG 2 cut(s) 411, 516
BspACI CCGC 7 cut(s) 101, 126, 132, 682, 799, 856, 1000
BspANI GGCC 5 cut(s) 364, 569, 752, 1212, 1241
BspEI TCCGGA 1 cut(s) 142
BspFNI CGCG 2 cut(s) 94, 1399
BspLI GGNNCC 4 cut(s) 86, 178, 751, 1031
BspMAI CTGCAG 1 cut(s) 1083
BspPI GGATC 2 cut(s) 111, 729
BspQI GCTCTTC 1 cut(s) 902
BsrBI CCGCTC 1 cut(s) 1002
BsrDI GCAATG 1 cut(s) 1171
BsrI ACTGG 2 cut(s) 544, 785
BssECI CCNNGG 5 cut(s) 411, 516, 716, 1161, 1403
BssMI GATC 4 cut(s) 103, 721, 818, 1051
BssNI GRCGYC 1 cut(s) 962
BssSI CACGAG 1 cut(s) 1332
BssT1I CCWWGG 3 cut(s) 411, 516, 1403
Bst2BI CACGAG 1 cut(s) 1332
Bst2UI CCWGG 2 cut(s) 717, 1265
Bst4CI ACNGT 5 cut(s) 77, 123, 236, 322, 1059
Bst6I CTCTTC 2 cut(s) 587, 902
BstACI GRCGYC 1 cut(s) 962
BstAPI GCANNNNNTGC 3 cut(s) 1291, 1300, 1334
BstBAI YACGTR 1 cut(s) 560
BstDEI CTNAG 3 cut(s) 602, 644, 1379
BstDSI CCRYGG 2 cut(s) 411, 516
BstEII GGTNACC 1 cut(s) 542
BstENI CCTNNNNNAGG 1 cut(s) 1262
BstF5I GGATG 2 cut(s) 151, 454
BstFNI CGCG 2 cut(s) 94, 1399
BstHHI GCGC 2 cut(s) 173, 1399
BstKTI GATC 4 cut(s) 106, 724, 821, 1054
BstMAI GTCTC 4 cut(s) 63, 1145, 1273, 1373
BstMBI GATC 4 cut(s) 103, 721, 818, 1051
BstMWI GCNNNNNNNGC 7 cut(s) 562, 655, 661, 1106, 1291, 1300, 1334
BstNI CCWGG 2 cut(s) 717, 1265
BstNSI RCATGY 3 cut(s) 343, 943, 955
BstPI GGTNACC 1 cut(s) 542
BstSCI CCNGG 2 cut(s) 715, 1263
BstSFI CTRYAG 1 cut(s) 1079
BstSLI GKGCMC 1 cut(s) 1339
BstSNI TACGTA 1 cut(s) 560
BstUI CGCG 2 cut(s) 94, 1399
BstX2I RGATCY 1 cut(s) 103
BstXI CCANNNNNNTGG 1 cut(s) 479
BstYI RGATCY 1 cut(s) 103
BsuRI GGCC 5 cut(s) 364, 569, 752, 1212, 1241
BtgI CCRYGG 2 cut(s) 411, 516
BtgZI GCGATG 1 cut(s) 898
BtsCI GGATG 2 cut(s) 151, 454
BtsIMutI CAGTG 5 cut(s) 82, 741, 778, 966, 1357
CaiI CAGNNNCTG 2 cut(s) 628, 1187
CfoI GCGC 2 cut(s) 173, 1399
Cfr13I GGNCC 3 cut(s) 568, 750, 1210
CseI GACGC 3 cut(s) 562, 970, 1388
Csp6I GTAC 3 cut(s) 215, 323, 343
CviQI GTAC 3 cut(s) 215, 323, 343
DdeI CTNAG 3 cut(s) 602, 644, 1379
DpnI GATC 4 cut(s) 105, 723, 820, 1053
DpnII GATC 4 cut(s) 103, 721, 818, 1051
EaeI YGGCCR 1 cut(s) 1239
Eam1104I CTCTTC 2 cut(s) 587, 902
EarI CTCTTC 2 cut(s) 587, 902
Eco105I TACGTA 1 cut(s) 560
Eco130I CCWWGG 3 cut(s) 411, 516, 1403
Eco24I GRGCYC 2 cut(s) 682, 1044
Eco57I CTGAAG 2 cut(s) 656, 1122
Eco88I CYCGRG 1 cut(s) 1037
Eco91I GGTNACC 1 cut(s) 542
EcoNI CCTNNNNNAGG 1 cut(s) 1262
EcoO109I RGGNCCY 1 cut(s) 750
EcoO65I GGTNACC 1 cut(s) 542
EcoRII CCWGG 2 cut(s) 715, 1263
EcoT14I CCWWGG 3 cut(s) 411, 516, 1403
EcoT38I GRGCYC 2 cut(s) 682, 1044
ErhI CCWWGG 3 cut(s) 411, 516, 1403
Esp3I CGTCTC 2 cut(s) 63, 1373
FauI CCCGC 1 cut(s) 689
FauNDI CATATG 2 cut(s) 616, 837
FblI GTMKAC 2 cut(s) 598, 640
FokI GGATG 2 cut(s) 158, 461
FriOI GRGCYC 2 cut(s) 682, 1044
FspBI CTAG 2 cut(s) 500, 1404
GlaI GCGC 2 cut(s) 172, 1398
GsuI CTGGAG 1 cut(s) 680
HaeIII GGCC 5 cut(s) 364, 569, 752, 1212, 1241
HapII CCGG 3 cut(s) 82, 143, 282
HgaI GACGC 3 cut(s) 562, 970, 1388
HhaI GCGC 2 cut(s) 173, 1399
Hin1I GRCGYC 1 cut(s) 962
Hin6I GCGC 2 cut(s) 171, 1397
HinP1I GCGC 2 cut(s) 171, 1397
HincII GTYRAC 3 cut(s) 454, 599, 641
HindII GTYRAC 3 cut(s) 454, 599, 641
HinfI GANTC 6 cut(s) 512, 595, 859, 996, 1168, 1309
HpaII CCGG 3 cut(s) 82, 143, 282
HphI GGTGA 2 cut(s) 410, 554
Hpy166II GTNNAC 4 cut(s) 316, 454, 599, 641
Hpy188I TCNGA 3 cut(s) 1009, 1314, 1373
Hpy188III TCNNGA 3 cut(s) 143, 372, 1018
Hpy8I GTNNAC 4 cut(s) 316, 454, 599, 641
Hpy99I CGWCG 1 cut(s) 370
HpyAV CCTTC 4 cut(s) 64, 145, 354, 1349
HpyCH4III ACNGT 5 cut(s) 77, 123, 236, 322, 1059
HpyCH4IV ACGT 2 cut(s) 246, 559
HpyCH4V TGCA 8 cut(s) 4, 229, 487, 776, 1074, 1081, 1294, 1303
HpyF10VI GCNNNNNNNGC 7 cut(s) 562, 655, 661, 1106, 1291, 1300, 1334
HpyF3I CTNAG 3 cut(s) 602, 644, 1379
HpySE526I ACGT 2 cut(s) 246, 559
Hsp92I GRCGYC 1 cut(s) 962
HspAI GCGC 2 cut(s) 171, 1397
Kpn2I TCCGGA 1 cut(s) 142
Kzo9I GATC 4 cut(s) 103, 721, 818, 1051
LguI GCTCTTC 1 cut(s) 902
LmnI GCTCC 5 cut(s) 182, 494, 520, 661, 1007
LweI GCATC 3 cut(s) 139, 921, 1096
MaeI CTAG 2 cut(s) 500, 1404
MaeII ACGT 2 cut(s) 246, 559
MaeIII GTNAC 4 cut(s) 77, 542, 1113, 1352
MalI GATC 4 cut(s) 105, 723, 820, 1053
MbiI CCGCTC 1 cut(s) 1002
MboI GATC 4 cut(s) 103, 721, 818, 1051
MboII GAAGA 4 cut(s) 604, 619, 919, 1115
MfeI CAATTG 2 cut(s) 1221, 1298
MflI RGATCY 1 cut(s) 103
MhlI GDGCHC 5 cut(s) 499, 682, 1044, 1339, 1378
MlsI TGGCCA 1 cut(s) 1241
MluCI AATT 7 cut(s) 391, 403, 829, 851, 1221, 1252, 1298
MluI ACGCGT 1 cut(s) 92
MluNI TGGCCA 1 cut(s) 1241
MlyI GAGTC 1 cut(s) 604
Mox20I TGGCCA 1 cut(s) 1241
MroI TCCGGA 1 cut(s) 142
MscI TGGCCA 1 cut(s) 1241
MseI TTAA 3 cut(s) 161, 191, 1046
MslI CAYNNNNRTG 2 cut(s) 234, 888
Msp20I TGGCCA 1 cut(s) 1241
MspA1I CMGCKG 4 cut(s) 628, 658, 799, 824
MspI CCGG 3 cut(s) 82, 143, 282
MspR9I CCNGG 2 cut(s) 717, 1265
MunI CAATTG 2 cut(s) 1221, 1298
MvaI CCWGG 2 cut(s) 717, 1265
MvnI CGCG 2 cut(s) 94, 1399
MwoI GCNNNNNNNGC 7 cut(s) 562, 655, 661, 1106, 1291, 1300, 1334
NcoI CCATGG 2 cut(s) 411, 516
NdeI CATATG 2 cut(s) 616, 837
NdeII GATC 4 cut(s) 103, 721, 818, 1051
NlaIV GGNNCC 4 cut(s) 86, 178, 751, 1031
NmeAIII GCCGAG 1 cut(s) 1142
NmuCI GTSAC 4 cut(s) 77, 542, 1113, 1352
NspI RCATGY 3 cut(s) 343, 943, 955
OliI CACNNNNGTG 1 cut(s) 234
PaeR7I CTCGAG 1 cut(s) 1037
PciI ACATGT 1 cut(s) 339
PciSI GCTCTTC 1 cut(s) 902
PfeI GAWTC 5 cut(s) 512, 859, 996, 1168, 1309
PflMI CCANNNNNTGG 1 cut(s) 628
PleI GAGTC 1 cut(s) 603
PpsI GAGTC 1 cut(s) 603
Ppu21I YACGTR 1 cut(s) 560
PscI ACATGT 1 cut(s) 339
Psp1406I AACGTT 1 cut(s) 246
Psp6I CCWGG 2 cut(s) 715, 1263
PspEI GGTNACC 1 cut(s) 542
PspGI CCWGG 2 cut(s) 715, 1263
PspN4I GGNNCC 4 cut(s) 86, 178, 751, 1031
PspPI GGNCC 3 cut(s) 568, 750, 1210
PspXI VCTCGAGB 1 cut(s) 1037
PstI CTGCAG 1 cut(s) 1083
PstNI CAGNNNCTG 2 cut(s) 628, 1187
PsuI RGATCY 1 cut(s) 103
PvuII CAGCTG 3 cut(s) 628, 658, 824
RsaI GTAC 3 cut(s) 216, 324, 344
RsaNI GTAC 3 cut(s) 215, 323, 343
RseI CAYNNNNRTG 2 cut(s) 234, 888
SalI GTCGAC 2 cut(s) 597, 639
SapI GCTCTTC 1 cut(s) 902
SaqAI TTAA 3 cut(s) 161, 191, 1046
Sau3AI GATC 4 cut(s) 103, 721, 818, 1051
Sau96I GGNCC 3 cut(s) 568, 750, 1210
SchI GAGTC 1 cut(s) 604
ScrFI CCNGG 2 cut(s) 717, 1265
SduI GDGCHC 5 cut(s) 499, 682, 1044, 1339, 1378
SfaNI GCATC 3 cut(s) 139, 921, 1096
SfcI CTRYAG 1 cut(s) 1079
Sfr274I CTCGAG 1 cut(s) 1037
SlaI CTCGAG 1 cut(s) 1037
SmiMI CAYNNNNRTG 2 cut(s) 234, 888
SmlI CTYRAG 4 cut(s) 785, 1016, 1037, 1247
SmoI CTYRAG 4 cut(s) 785, 1016, 1037, 1247
SnaBI TACGTA 1 cut(s) 560
SpeI ACTAGT 1 cut(s) 499
Sse9I AATT 7 cut(s) 391, 403, 829, 851, 1221, 1252, 1298
SsiI CCGC 7 cut(s) 101, 126, 132, 682, 799, 856, 1000
SspMI CTAG 2 cut(s) 500, 1404
StyD4I CCNGG 2 cut(s) 715, 1263
StyI CCWWGG 3 cut(s) 411, 516, 1403
TaaI ACNGT 5 cut(s) 77, 123, 236, 322, 1059
TaiI ACGT 2 cut(s) 249, 562
TaqI TCGA 3 cut(s) 598, 640, 1038
TasI AATT 7 cut(s) 391, 403, 829, 851, 1221, 1252, 1298
TatI WGTACW 1 cut(s) 322
TauI GCSGC 1 cut(s) 802
TfiI GAWTC 5 cut(s) 512, 859, 996, 1168, 1309
Tru1I TTAA 3 cut(s) 161, 191, 1046
Tru9I TTAA 3 cut(s) 161, 191, 1046
TscAI CASTG 5 cut(s) 82, 741, 785, 973, 1357
TseFI GTSAC 4 cut(s) 77, 542, 1113, 1352
Tsp45I GTSAC 4 cut(s) 77, 542, 1113, 1352
TspDTI ATGAA 2 cut(s) 467, 864
TspGWI ACGGA 1 cut(s) 461
TspRI CASTG 5 cut(s) 82, 741, 785, 973, 1357
Van91I CCANNNNNTGG 1 cut(s) 628
XagI CCTNNNNNAGG 1 cut(s) 1262
XapI RAATTY 1 cut(s) 1252
XceI RCATGY 3 cut(s) 343, 943, 955
XhoI CTCGAG 1 cut(s) 1037
XmaJI CCTAGG 1 cut(s) 1403
XmiI GTMKAC 2 cut(s) 598, 640
XspI CTAG 2 cut(s) 500, 1404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.