transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G68640 |
| fragaria_vesca | FvH4_4g27750 FvH4_4g27750 |
| malus_domestica | MD13G1044600.v1.1 MD16G1046000.v1.1 |
| prunus_persica | Prupe.1G307300_v2.0.a1 Prupe.1G307300_v2.0.a1 Prupe.1G307300_v2.0.a1 Prupe.1G307300_v2.0.a1 Prupe.1G307300_v2.0.a1 |
| pyrus_communis | pycom13g03950 pycom16g04060 |
| rosa_chinensis | RchiOBHm_Chr4g0435611 |
| rosa_laevigata | RLG00000006577 |
| rosa_multiflora | Rmu_sc0000051.1_g000002 |
| rosa_roxburghii | Rroxscaffold_5G00376840 |
| rosa_rugosa | Rorug04G0287100 |
| rosa_samantha | Rh4AG342400 Rh4BG350700 Rh4CG365400 Rh4DG345000 |
| rosa_wichuraiana | Rw4G029880 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 28 |
| AatII | GACGTC | 1 cut(s) | 29 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 292 |
| AccBSI | CCGCTC | 1 cut(s) | 666 |
| AccI | GTMKAC | 2 cut(s) | 262, 304 |
| AccII | CGCG | 3 cut(s) | 863, 999, 1063 |
| AciI | CCGC | 6 cut(s) | 346, 463, 520, 630, 664, 863 |
| AclWI | GGATC | 1 cut(s) | 393 |
| AcoI | YGGCCR | 1 cut(s) | 903 |
| AcsI | RAATTY | 2 cut(s) | 493, 916 |
| AcuI | CTGAAG | 2 cut(s) | 320, 786 |
| AcyI | GRCGYC | 2 cut(s) | 26, 626 |
| AfaI | GTAC | 1 cut(s) | 5 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 292, 352, 636, 928 |
| AgsI | TTSAA | 3 cut(s) | 427, 452, 571 |
| AjnI | CCWGG | 2 cut(s) | 379, 927 |
| AluBI | AGCT | 7 cut(s) | 292, 322, 334, 488, 794, 901, 995 |
| AluI | AGCT | 7 cut(s) | 292, 322, 334, 488, 794, 901, 995 |
| Alw21I | GWGCWC | 3 cut(s) | 160, 1023, 1042 |
| Alw26I | GTCTC | 2 cut(s) | 937, 1037 |
| AlwI | GGATC | 1 cut(s) | 393 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 292, 466 |
| AoxI | GGCC | 4 cut(s) | 231, 414, 874, 903 |
| ApeKI | GCWGC | 8 cut(s) | 10, 148, 248, 289, 319, 581, 745, 992 |
| ApoI | RAATTY | 2 cut(s) | 493, 916 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 85, 117 |
| AspA2I | CCTAGG | 1 cut(s) | 1067 |
| AspLEI | GCGC | 2 cut(s) | 1001, 1063 |
| AspS9I | GGNCC | 3 cut(s) | 232, 414, 874 |
| AsuHPI | GGTGA | 3 cut(s) | 71, 218, 917 |
| AvrII | CCTAGG | 1 cut(s) | 1067 |
| BalI | TGGCCA | 1 cut(s) | 905 |
| BanII | GRGCYC | 1 cut(s) | 346 |
| BbsI | GAAGAC | 1 cut(s) | 629 |
| Bbv12I | GWGCWC | 3 cut(s) | 160, 1023, 1042 |
| BbvI | GCAGC | 8 cut(s) | 22, 160, 260, 301, 331, 568, 757, 1004 |
| BccI | CCATC | 4 cut(s) | 141, 365, 721, 781 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1010, 1044 |
| BciT130I | CCWGG | 2 cut(s) | 381, 929 |
| BcoDI | GTCTC | 2 cut(s) | 937, 1037 |
| BfaI | CTAG | 3 cut(s) | 323, 527, 1068 |
| BfmI | CTRYAG | 1 cut(s) | 743 |
| BisI | GCNGC | 9 cut(s) | 11, 149, 249, 290, 320, 464, 582, 746, 993 |
| BlnI | CCTAGG | 1 cut(s) | 1067 |
| BlsI | GCNGC | 9 cut(s) | 12, 150, 250, 291, 321, 465, 583, 747, 994 |
| Bme1390I | CCNGG | 2 cut(s) | 381, 929 |
| BmgT120I | GGNCC | 3 cut(s) | 232, 414, 874 |
| BmiI | GGNNCC | 2 cut(s) | 415, 695 |
| BmrFI | CCNGG | 2 cut(s) | 381, 929 |
| BmsI | GCATC | 2 cut(s) | 760, 976 |
| BpiI | GAAGAC | 1 cut(s) | 629 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1010, 1042 |
| BpuEI | CTTGAG | 2 cut(s) | 665, 932 |
| BsaAI | YACGTR | 1 cut(s) | 224 |
| BsaHI | GRCGYC | 2 cut(s) | 26, 626 |
| BsaJI | CCNNGG | 4 cut(s) | 72, 380, 891, 1067 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 292, 352, 636, 928 |
| Bse1I | ACTGG | 2 cut(s) | 208, 850 |
| Bse3DI | GCAATG | 2 cut(s) | 576, 835 |
| BseBI | CCWGG | 2 cut(s) | 381, 929 |
| BseDI | CCNNGG | 4 cut(s) | 72, 380, 891, 1067 |
| BseGI | GGATG | 2 cut(s) | 115, 792 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 292, 352, 636, 928 |
| BseMI | GCAATG | 2 cut(s) | 576, 835 |
| BseMII | CTCAG | 1 cut(s) | 1057 |
| BseNI | ACTGG | 2 cut(s) | 208, 850 |
| BseXI | GCAGC | 8 cut(s) | 22, 160, 260, 301, 331, 568, 757, 1004 |
| BsgI | GTGCAG | 1 cut(s) | 167 |
| Bsh1236I | CGCG | 3 cut(s) | 863, 999, 1063 |
| BshFI | GGCC | 4 cut(s) | 233, 416, 876, 905 |
| BsiHKAI | GWGCWC | 3 cut(s) | 160, 1023, 1042 |
| BslFI | GGGAC | 1 cut(s) | 34 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 292, 352, 636, 928 |
| BsmAI | GTCTC | 2 cut(s) | 937, 1037 |
| BsmBI | CGTCTC | 1 cut(s) | 1037 |
| BsmFI | GGGAC | 1 cut(s) | 34 |
| BsnI | GGCC | 4 cut(s) | 233, 416, 876, 905 |
| Bsp1286I | GDGCHC | 4 cut(s) | 160, 346, 1023, 1042 |
| Bsp143I | GATC | 2 cut(s) | 385, 482 |
| Bsp19I | CCATGG | 2 cut(s) | 72, 891 |
| BspACI | CCGC | 6 cut(s) | 346, 463, 520, 630, 664, 863 |
| BspANI | GGCC | 4 cut(s) | 233, 416, 876, 905 |
| BspCNI | CTCAG | 1 cut(s) | 1056 |
| BspFNI | CGCG | 3 cut(s) | 863, 999, 1063 |
| BspLI | GGNNCC | 2 cut(s) | 415, 695 |
| BspMAI | CTGCAG | 1 cut(s) | 747 |
| BspPI | GGATC | 1 cut(s) | 393 |
| BspQI | GCTCTTC | 1 cut(s) | 566 |
| BsrBI | CCGCTC | 1 cut(s) | 666 |
| BsrDI | GCAATG | 2 cut(s) | 576, 835 |
| BsrI | ACTGG | 2 cut(s) | 208, 850 |
| BssECI | CCNNGG | 4 cut(s) | 72, 380, 891, 1067 |
| BssMI | GATC | 2 cut(s) | 385, 482 |
| BssNI | GRCGYC | 2 cut(s) | 26, 626 |
| BssT1I | CCWWGG | 3 cut(s) | 72, 891, 1067 |
| Bst2UI | CCWGG | 2 cut(s) | 381, 929 |
| Bst6I | CTCTTC | 2 cut(s) | 251, 566 |
| BstACI | GRCGYC | 2 cut(s) | 26, 626 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 955, 964 |
| BstBAI | YACGTR | 1 cut(s) | 224 |
| BstDEI | CTNAG | 2 cut(s) | 308, 1043 |
| BstDSI | CCRYGG | 2 cut(s) | 72, 891 |
| BstEII | GGTNACC | 1 cut(s) | 206 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 926 |
| BstF5I | GGATG | 2 cut(s) | 115, 792 |
| BstFNI | CGCG | 3 cut(s) | 863, 999, 1063 |
| BstHHI | GCGC | 2 cut(s) | 1001, 1063 |
| BstKTI | GATC | 2 cut(s) | 388, 485 |
| BstMAI | GTCTC | 2 cut(s) | 937, 1037 |
| BstMBI | GATC | 2 cut(s) | 385, 482 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 319, 325, 770, 955, 964, 998 |
| BstNI | CCWGG | 2 cut(s) | 381, 929 |
| BstNSI | RCATGY | 2 cut(s) | 607, 619 |
| BstPI | GGTNACC | 1 cut(s) | 206 |
| BstSCI | CCNGG | 2 cut(s) | 379, 927 |
| BstSFI | CTRYAG | 1 cut(s) | 743 |
| BstSNI | TACGTA | 1 cut(s) | 224 |
| BstUI | CGCG | 3 cut(s) | 863, 999, 1063 |
| BstV1I | GCAGC | 8 cut(s) | 22, 160, 260, 301, 331, 568, 757, 1004 |
| BstV2I | GAAGAC | 1 cut(s) | 629 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 140 |
| BsuRI | GGCC | 4 cut(s) | 233, 416, 876, 905 |
| BtgI | CCRYGG | 2 cut(s) | 72, 891 |
| BtsCI | GGATG | 2 cut(s) | 115, 792 |
| BtsIMutI | CAGTG | 3 cut(s) | 405, 843, 1021 |
| CaiI | CAGNNNCTG | 2 cut(s) | 292, 466 |
| CfoI | GCGC | 2 cut(s) | 1001, 1063 |
| Cfr13I | GGNCC | 3 cut(s) | 232, 414, 874 |
| CseI | GACGC | 2 cut(s) | 634, 1052 |
| Csp6I | GTAC | 1 cut(s) | 4 |
| CviAII | CATG | 9 cut(s) | 73, 140, 152, 389, 473, 604, 616, 871, 892 |
| CviQI | GTAC | 1 cut(s) | 4 |
| DdeI | CTNAG | 2 cut(s) | 308, 1043 |
| DpnI | GATC | 2 cut(s) | 387, 484 |
| DpnII | GATC | 2 cut(s) | 385, 482 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 28 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 28 |
| EaeI | YGGCCR | 1 cut(s) | 903 |
| Eam1104I | CTCTTC | 2 cut(s) | 251, 566 |
| EarI | CTCTTC | 2 cut(s) | 251, 566 |
| Eco105I | TACGTA | 1 cut(s) | 224 |
| Eco130I | CCWWGG | 3 cut(s) | 72, 891, 1067 |
| Eco24I | GRGCYC | 1 cut(s) | 346 |
| Eco57I | CTGAAG | 2 cut(s) | 320, 786 |
| Eco91I | GGTNACC | 1 cut(s) | 206 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 926 |
| EcoO109I | RGGNCCY | 1 cut(s) | 414 |
| EcoO65I | GGTNACC | 1 cut(s) | 206 |
| EcoRI | GAATTC | 1 cut(s) | 493 |
| EcoRII | CCWGG | 2 cut(s) | 379, 927 |
| EcoT14I | CCWWGG | 3 cut(s) | 72, 891, 1067 |
| EcoT38I | GRGCYC | 1 cut(s) | 346 |
| ErhI | CCWWGG | 3 cut(s) | 72, 891, 1067 |
| Esp3I | CGTCTC | 1 cut(s) | 1037 |
| FaeI | CATG | 9 cut(s) | 76, 143, 155, 392, 476, 607, 619, 874, 895 |
| FaqI | GGGAC | 1 cut(s) | 34 |
| FatI | CATG | 9 cut(s) | 72, 139, 151, 388, 472, 603, 615, 870, 891 |
| FauI | CCCGC | 2 cut(s) | 353, 637 |
| FauNDI | CATATG | 2 cut(s) | 280, 501 |
| FblI | GTMKAC | 2 cut(s) | 262, 304 |
| Fnu4HI | GCNGC | 9 cut(s) | 11, 149, 249, 290, 320, 464, 582, 746, 993 |
| FokI | GGATG | 2 cut(s) | 122, 799 |
| FriOI | GRGCYC | 1 cut(s) | 346 |
| Fsp4HI | GCNGC | 9 cut(s) | 11, 149, 249, 290, 320, 464, 582, 746, 993 |
| FspBI | CTAG | 3 cut(s) | 323, 527, 1068 |
| GlaI | GCGC | 2 cut(s) | 1000, 1062 |
| GluI | GCNGC | 9 cut(s) | 11, 149, 249, 290, 320, 464, 582, 746, 993 |
| HaeIII | GGCC | 4 cut(s) | 233, 416, 876, 905 |
| HgaI | GACGC | 2 cut(s) | 634, 1052 |
| HhaI | GCGC | 2 cut(s) | 1001, 1063 |
| Hin1I | GRCGYC | 2 cut(s) | 26, 626 |
| Hin1II | CATG | 9 cut(s) | 76, 143, 155, 392, 476, 607, 619, 874, 895 |
| Hin6I | GCGC | 2 cut(s) | 999, 1061 |
| HinP1I | GCGC | 2 cut(s) | 999, 1061 |
| HincII | GTYRAC | 4 cut(s) | 115, 263, 305, 532 |
| HindII | GTYRAC | 4 cut(s) | 115, 263, 305, 532 |
| HindIII | AAGCTT | 1 cut(s) | 792 |
| HinfI | GANTC | 5 cut(s) | 173, 259, 523, 660, 973 |
| HphI | GGTGA | 3 cut(s) | 71, 218, 917 |
| Hpy166II | GTNNAC | 4 cut(s) | 115, 263, 305, 532 |
| Hpy188I | TCNGA | 5 cut(s) | 673, 853, 972, 978, 1037 |
| Hpy188III | TCNNGA | 2 cut(s) | 33, 682 |
| Hpy8I | GTNNAC | 4 cut(s) | 115, 263, 305, 532 |
| Hpy99I | CGWCG | 3 cut(s) | 28, 31, 109 |
| HpyAV | CCTTC | 2 cut(s) | 932, 1013 |
| HpyCH4IV | ACGT | 2 cut(s) | 26, 223 |
| HpyCH4V | TGCA | 9 cut(s) | 148, 368, 440, 584, 738, 745, 799, 958, 967 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 319, 325, 770, 955, 964, 998 |
| HpyF3I | CTNAG | 2 cut(s) | 308, 1043 |
| HpySE526I | ACGT | 2 cut(s) | 26, 223 |
| Hsp92I | GRCGYC | 2 cut(s) | 26, 626 |
| Hsp92II | CATG | 9 cut(s) | 76, 143, 155, 392, 476, 607, 619, 874, 895 |
| HspAI | GCGC | 2 cut(s) | 999, 1061 |
| Kzo9I | GATC | 2 cut(s) | 385, 482 |
| LguI | GCTCTTC | 1 cut(s) | 566 |
| LmnI | GCTCC | 1 cut(s) | 155 |
| Lsp1109I | GCAGC | 8 cut(s) | 22, 160, 260, 301, 331, 568, 757, 1004 |
| LweI | GCATC | 2 cut(s) | 760, 976 |
| MaeI | CTAG | 3 cut(s) | 323, 527, 1068 |
| MaeII | ACGT | 2 cut(s) | 26, 223 |
| MaeIII | GTNAC | 2 cut(s) | 206, 777 |
| MalI | GATC | 2 cut(s) | 387, 484 |
| MbiI | CCGCTC | 1 cut(s) | 666 |
| MboI | GATC | 2 cut(s) | 385, 482 |
| MboII | GAAGA | 7 cut(s) | 128, 268, 283, 464, 583, 634, 779 |
| MfeI | CAATTG | 2 cut(s) | 885, 962 |
| MhlI | GDGCHC | 4 cut(s) | 160, 346, 1023, 1042 |
| MlsI | TGGCCA | 1 cut(s) | 905 |
| MluCI | AATT | 7 cut(s) | 52, 64, 493, 515, 885, 916, 962 |
| MluNI | TGGCCA | 1 cut(s) | 905 |
| MlyI | GAGTC | 1 cut(s) | 268 |
| MnlI | CCTC | 3 cut(s) | 710, 763, 835 |
| Mox20I | TGGCCA | 1 cut(s) | 905 |
| MscI | TGGCCA | 1 cut(s) | 905 |
| MseI | TTAA | 2 cut(s) | 419, 710 |
| MslI | CAYNNNNRTG | 2 cut(s) | 138, 552 |
| Msp20I | TGGCCA | 1 cut(s) | 905 |
| MspA1I | CMGCKG | 4 cut(s) | 292, 463, 488, 632 |
| MspR9I | CCNGG | 2 cut(s) | 381, 929 |
| MunI | CAATTG | 2 cut(s) | 885, 962 |
| MvaI | CCWGG | 2 cut(s) | 381, 929 |
| MvnI | CGCG | 3 cut(s) | 863, 999, 1063 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 319, 325, 770, 955, 964, 998 |
| NcoI | CCATGG | 2 cut(s) | 72, 891 |
| NdeI | CATATG | 2 cut(s) | 280, 501 |
| NdeII | GATC | 2 cut(s) | 385, 482 |
| NlaIII | CATG | 9 cut(s) | 76, 143, 155, 392, 476, 607, 619, 874, 895 |
| NlaIV | GGNNCC | 2 cut(s) | 415, 695 |
| NmuCI | GTSAC | 2 cut(s) | 206, 777 |
| NspI | RCATGY | 2 cut(s) | 607, 619 |
| PciSI | GCTCTTC | 1 cut(s) | 566 |
| PfeI | GAWTC | 4 cut(s) | 173, 523, 660, 973 |
| PflFI | GACNNNGTC | 2 cut(s) | 25, 28 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 292 |
| PkrI | GCNGC | 9 cut(s) | 12, 150, 250, 291, 321, 465, 583, 747, 994 |
| PleI | GAGTC | 1 cut(s) | 267 |
| PpsI | GAGTC | 1 cut(s) | 267 |
| Ppu21I | YACGTR | 1 cut(s) | 224 |
| Psp6I | CCWGG | 2 cut(s) | 379, 927 |
| PspEI | GGTNACC | 1 cut(s) | 206 |
| PspGI | CCWGG | 2 cut(s) | 379, 927 |
| PspN4I | GGNNCC | 2 cut(s) | 415, 695 |
| PspPI | GGNCC | 3 cut(s) | 232, 414, 874 |
| PstI | CTGCAG | 1 cut(s) | 747 |
| PstNI | CAGNNNCTG | 2 cut(s) | 292, 466 |
| PsyI | GACNNNGTC | 2 cut(s) | 25, 28 |
| PvuII | CAGCTG | 2 cut(s) | 292, 488 |
| RsaI | GTAC | 1 cut(s) | 5 |
| RsaNI | GTAC | 1 cut(s) | 4 |
| RseI | CAYNNNNRTG | 2 cut(s) | 138, 552 |
| SalI | GTCGAC | 2 cut(s) | 261, 303 |
| SapI | GCTCTTC | 1 cut(s) | 566 |
| SaqAI | TTAA | 2 cut(s) | 419, 710 |
| SatI | GCNGC | 9 cut(s) | 11, 149, 249, 290, 320, 464, 582, 746, 993 |
| Sau3AI | GATC | 2 cut(s) | 385, 482 |
| Sau96I | GGNCC | 3 cut(s) | 232, 414, 874 |
| SchI | GAGTC | 1 cut(s) | 268 |
| ScrFI | CCNGG | 2 cut(s) | 381, 929 |
| SduI | GDGCHC | 4 cut(s) | 160, 346, 1023, 1042 |
| SfaNI | GCATC | 2 cut(s) | 760, 976 |
| SfcI | CTRYAG | 1 cut(s) | 743 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 138, 552 |
| SmlI | CTYRAG | 2 cut(s) | 680, 911 |
| SmoI | CTYRAG | 2 cut(s) | 680, 911 |
| SnaBI | TACGTA | 1 cut(s) | 224 |
| Sse9I | AATT | 7 cut(s) | 52, 64, 493, 515, 885, 916, 962 |
| SsiI | CCGC | 6 cut(s) | 346, 463, 520, 630, 664, 863 |
| SspMI | CTAG | 3 cut(s) | 323, 527, 1068 |
| StyD4I | CCNGG | 2 cut(s) | 379, 927 |
| StyI | CCWWGG | 3 cut(s) | 72, 891, 1067 |
| TaiI | ACGT | 2 cut(s) | 29, 226 |
| TaqI | TCGA | 4 cut(s) | 104, 262, 304, 702 |
| TasI | AATT | 7 cut(s) | 52, 64, 493, 515, 885, 916, 962 |
| TauI | GCSGC | 1 cut(s) | 466 |
| TfiI | GAWTC | 4 cut(s) | 173, 523, 660, 973 |
| Tru1I | TTAA | 2 cut(s) | 419, 710 |
| Tru9I | TTAA | 2 cut(s) | 419, 710 |
| TscAI | CASTG | 3 cut(s) | 405, 850, 1021 |
| TseFI | GTSAC | 2 cut(s) | 206, 777 |
| TseI | GCWGC | 8 cut(s) | 10, 148, 248, 289, 319, 581, 745, 992 |
| Tsp45I | GTSAC | 2 cut(s) | 206, 777 |
| TspDTI | ATGAA | 3 cut(s) | 128, 489, 528 |
| TspGWI | ACGGA | 2 cut(s) | 54, 122 |
| TspRI | CASTG | 3 cut(s) | 405, 850, 1021 |
| Tth111I | GACNNNGTC | 2 cut(s) | 25, 28 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 292 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 926 |
| XapI | RAATTY | 2 cut(s) | 493, 916 |
| XceI | RCATGY | 2 cut(s) | 607, 619 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 898 |
| XmaJI | CCTAGG | 1 cut(s) | 1067 |
| XmiI | GTMKAC | 2 cut(s) | 262, 304 |
| XspI | CTAG | 3 cut(s) | 323, 527, 1068 |
| ZraI | GACGTC | 1 cut(s) | 27 |