Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0008955

Physical Location & Seq

Genomic Coordinates Reverse (-)

57417040 .. 57427304

Gene Structure 10265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00376840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2256 bp

ATGGATGGGAATATGGTCCTTTGGGGCTGCTGGTGTTGTAGCTTTAGGCATTGGAGATGGTGGACGCTGGTGGCTTCTTGTGGTGAGCTGGTTCTCTCTGTAAGCTTATTTTGGACGGGTGCTGTTCTCTGTAATACTGTACATGTTATAGTGTCTGGGATGGTGTTTCTTGTTCTTTCCCATGGTGGTCGAGAGGCCTCATCAATGCCTCCGAAGACACTAATGAAGTCTCTTCGGTATGCAGTCACAACTTCTTTTGGCAGCATCTGCTATGGTTCACTTTTCACAGCTGCCATTCGAACTTTGCGCTGGAAGATCAGGGGAGTTCGGTCCAAGATTGGCAACAATGAGTGTCTACTTTGCTGTGTTGATTTCCTCTTTCATCTTGTGGAGACACTTGTGCGATTCTTTAATAAGTATGCTTACGTCCAGATAGCTGTTTCTGGGAAAGGTTTCAATCATTCAGCGAGGGATGCTTGGGAGTTATTTCAGTCTACTGGAGTCGAGGCACTCATTGCCTATGATTGCTCAGGTGCTGTATTATTGATGGGCACACTGTTGGGTGGGCTTATTACCGGAACTTGCTCGGGGATCTGGACATGGATTAAATATAGGGACAGAGTGGCTATGGTCGGGTCCACTGCAATGTTGATGGGAATGATCCTGGTGGGATTAGCAATGGTGGTTGTGGAAAGTGCTGTCACATCTATATACATCTGTTATGCAGAAGACCCGTTGTTGATTCATAGGTGGGATGCTGAATTCTTCGACCAGATGTCGGAGATGCTACACCAGCGTCTTCAACATAGGAGTGCCCGGGCAAGGGAAGTGTTGACCCACAATCGGAGCGAAAACTTGATCGATAGGCAGCGCTGCGATTGGGGTCGAGTTGAGCAAAGAAGTCAGGTTCGAAGCTACAAAATTAGAACAGGCGAGCAACTTCATTTAGGAGATGACACGCCAACGCGTTTTGCGGATCTTGGAGAGCTTGAACATTCCGCTACTGTGTTTCCTCACGATGATGCTCTTGATTTAAGCTCAAGCTCTATCTTCAGCTTAAAAGCAAACAACAACAACTATGCTGTTGTACCTAATACTTTGCCCTATGCGACCATCAACACGGGCCCGGGGTGTTTGGACATAGGCTCAACCCTGTCGGGAACAGGGGGAGAGCAGCCATACATGTACCACCATCACAAAGGAACGACGTCGTCGGGTAACAACGGCCACTTTGAGAACTGGGGTGATTCGGCTGTGGCGGAGCACAGTCAGCAGACCGACACCTCTACCGATATTGAAACCGAAGACAAAAACCATCTTCGTGGAGCTCAGCATGGAGCACTAGTAGTAGTGGATTCCAATTCCATAGAGCAGGCTAATGGAAGAACTGGTGACCAAAAGGCACTACGTCGGTTGGCTCAGAATCGAGAAGCAGCAAGGAAGAGTCGACTTAGGAAGAAAGCATATGTCCAGCAGCTGGAGAATAGTAGACTAAAGCTTTCGCAACTTGAGCAAGAGCTTCAGCGAGCACGCCAGCAGGGTATGTTAGTTGGACTTTCAGGGGATCATGGTCATTCTACGGTGGGAAGTGGGGCCTTAACATTTGACTTTGAGTATGCACGCTGGCTTGATGAACATCAGCGTCTAATACATGAGCTGCGATCGGCTATGAATTCTCATCTGGTGGATAATGGGCTGAAAATTCATGTTGATAGTGTTATGACACACTATGATGAGATATTCAGGTTAAAGAGCGTGGCTGCCAAGGCTGATGTATTCCACATGCTTTCTGGCATGTGGAAGACACCTGCCGAAAGGTGTTTTATGTGGTTGGGAGGATTCCGCTCCTCTGAACTTCTCAAGATACTTGGGAACCAACTTGAGCCTTTAACAGATCAGCAGTTGATGGGGATATGCAATCTACAGCAATCTTCCCAACAGACTGAAGATGCCTTATCACAAGGGATGGAAGCTTTGCAACAATCGCTTGTAGACACGCTCTCCTCAACTACTCATGGCTCTACTGTTTCTGCAGATGTTGCCGACTACATGGGCCAAATGGCAATTGCTATGGGCAAGCTTGCCACACTGCAGGACTTCCTTATCCAGGCTGACCTATTGAGGCAGCAAACTCTGCAACAATTGCATCGTATTCTGACCACTCGACAAACTGCTCGTGCCCTTCTCGTTATCAACGATTACTTCTCGCGTCTCCGAGCGCTTAGTTCATTGTGGTTGGCCCGCCCTAGGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009909 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1 bZIP_2

Protein Analysis

751

Amino Acids

84.01

Weight (kDa)

7.0

Isoelectric Point (pI)

40.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Choline_transpo	PF04515	31 - 245	3.6e-47	Plasma-membrane choline transporter
bZIP_1	PF00170	467 - 507	4.8e-06	bZIP transcription factor
DOG1	PF14144	550 - 623	1.3e-30	Seed dormancy control

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68640
fragaria_vesca	FvH4_4g27750 FvH4_4g27750
malus_domestica	MD13G1044600.v1.1 MD16G1046000.v1.1
prunus_persica	Prupe.1G307300_v2.0.a1 Prupe.1G307300_v2.0.a1 Prupe.1G307300_v2.0.a1 Prupe.1G307300_v2.0.a1 Prupe.1G307300_v2.0.a1
pyrus_communis	pycom13g03950 pycom16g04060
rosa_chinensis	RchiOBHm_Chr4g0435611
rosa_laevigata	RLG00000006577
rosa_multiflora	Rmu_sc0000051.1_g000002
rosa_roxburghii	Rroxscaffold_5G00376840
rosa_rugosa	Rorug04G0287100
rosa_samantha	Rh4AG342400 Rh4BG350700 Rh4CG365400 Rh4DG345000
rosa_wichuraiana	Rw4G029880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1816
AatII	GACGTC	1 cut(s)	1211
Acc36I	ACCTGC	1 cut(s)	1816
AccB7I	CCANNNNNTGG	1 cut(s)	1477
AccBSI	CCGCTC	1 cut(s)	1845
AccI	GTMKAC	5 cut(s)	355, 494, 1447, 1489, 1992
AccII	CGCG	2 cut(s)	967, 2209
AciI	CCGC	5 cut(s)	974, 999, 1259, 1843, 2242
AclWI	GGATC	4 cut(s)	599, 655, 984, 1572
AcoI	YGGCCR	1 cut(s)	1225
AcsI	RAATTY	3 cut(s)	761, 1672, 1701
AcuI	CTGAAG	3 cut(s)	1036, 1505, 1965
AcyI	GRCGYC	1 cut(s)	1208
AfaI	GTAC	3 cut(s)	141, 1089, 1187
AfeI	AGCGCT	2 cut(s)	872, 2220
AfiI	CCNNNNNNNGG	8 cut(s)	778, 822, 823, 843, 1477, 2107, 2247, 2248
AflIII	ACRYGT	3 cut(s)	142, 965, 1182
AgsI	TTSAA	4 cut(s)	457, 803, 992, 1298
AhdI	GACNNNNNGTC	1 cut(s)	775
AhlI	ACTAGT	1 cut(s)	1342
AjnI	CCWGG	2 cut(s)	663, 2106
Alw21I	GWGCWC	4 cut(s)	1266, 1330, 1342, 1531
Alw26I	GTCTC	3 cut(s)	234, 386, 2216
AlwI	GGATC	4 cut(s)	599, 655, 984, 1572
AlwNI	CAGNNNCTG	3 cut(s)	267, 536, 1477
Ama87I	CYCGRG	3 cut(s)	586, 816, 1126
Aor51HI	AGCGCT	2 cut(s)	872, 2220
AoxI	GGCC	6 cut(s)	195, 1123, 1225, 1593, 2053, 2238
ApaI	GGGCCC	1 cut(s)	1127
ApoI	RAATTY	3 cut(s)	761, 1672, 1701
Asp700I	GAANNNNTTC	1 cut(s)	452
AspA2I	CCTAGG	1 cut(s)	2246
AspLEI	GCGC	3 cut(s)	309, 873, 2221
AspS9I	GGNCC	8 cut(s)	16, 330, 636, 1123, 1124, 1593, 2053, 2239
AsuC2I	CCSGG	4 cut(s)	817, 818, 1127, 1128
AsuHPI	GGTGA	3 cut(s)	95, 1256, 1403
AsuII	TTCGAA	2 cut(s)	298, 910
AvaI	CYCGRG	3 cut(s)	586, 816, 1126
AvaII	GGWCC	3 cut(s)	16, 330, 636
AvrII	CCTAGG	1 cut(s)	2246
BaeGI	GKGCMC	4 cut(s)	554, 817, 1127, 2182
BanII	GRGCYC	2 cut(s)	1127, 1330
BauI	CACGAG	1 cut(s)	2175
BbsI	GAAGAC	5 cut(s)	221, 735, 791, 1311, 1808
Bbv12I	GWGCWC	4 cut(s)	1266, 1330, 1342, 1531
BccI	CCATC	9 cut(s)	51, 154, 541, 646, 1121, 1200, 1323, 1900, 1960
BceAI	ACGGC	1 cut(s)	1240
BciT130I	CCWGG	2 cut(s)	665, 2108
BcnI	CCSGG	4 cut(s)	817, 818, 1127, 1128
BcoDI	GTCTC	3 cut(s)	234, 386, 2216
BcuI	ACTAGT	1 cut(s)	1342
BfaI	CTAG	2 cut(s)	1343, 2247
BfmI	CTRYAG	3 cut(s)	1922, 2031, 2090
BfoI	RGCGCY	2 cut(s)	874, 2222
BfuAI	ACCTGC	1 cut(s)	1816
BlnI	CCTAGG	1 cut(s)	2246
BlpI	GCTNAGC	1 cut(s)	1329
Bme1390I	CCNGG	6 cut(s)	665, 817, 818, 1127, 1128, 2108
Bme18I	GGWCC	3 cut(s)	16, 330, 636
BmeRI	GACNNNNNGTC	1 cut(s)	775
BmeT110I	CYCGRG	3 cut(s)	586, 816, 1126
BmgT120I	GGNCC	8 cut(s)	16, 330, 636, 1123, 1124, 1593, 2053, 2239
BmiI	GGNNCC	4 cut(s)	637, 1125, 1594, 1874
BmrFI	CCNGG	6 cut(s)	665, 817, 818, 1127, 1128, 2108
BmrI	ACTGGG	1 cut(s)	1249
BmsI	GCATC	7 cut(s)	273, 463, 745, 774, 1012, 1939, 2155
BmuI	ACTGGG	1 cut(s)	1249
BpiI	GAAGAC	5 cut(s)	221, 735, 791, 1311, 1808
BpmI	CTGGAG	2 cut(s)	519, 1499
Bpu10I	CCTNAGC	1 cut(s)	529
Bpu1102I	GCTNAGC	1 cut(s)	1329
Bpu14I	TTCGAA	2 cut(s)	298, 910
BpuEI	CTTGAG	4 cut(s)	1024, 1529, 1844, 1901
BpuMI	CCSGG	4 cut(s)	817, 818, 1127, 1128
Bsa29I	ATCGAT	1 cut(s)	861
BsaBI	GATNNNNATC	1 cut(s)	1635
BsaHI	GRCGYC	1 cut(s)	1208
BsaJI	CCNNGG	6 cut(s)	181, 816, 1126, 1127, 1764, 2246
BsaWI	WCCGGW	1 cut(s)	575
BsaXI	ACNNNNNCTCC	4 cut(s)	1329, 1359, 1985, 2015
Bsc4I	CCNNNNNNNGG	8 cut(s)	778, 822, 823, 843, 1477, 2107, 2247, 2248
Bse1I	ACTGG	3 cut(s)	502, 1244, 1393
Bse3DI	GCAATG	3 cut(s)	513, 651, 684
Bse8I	GATNNNNATC	1 cut(s)	1635
BseBI	CCWGG	2 cut(s)	665, 2108
BseCI	ATCGAT	1 cut(s)	861
BseDI	CCNNGG	6 cut(s)	181, 816, 1126, 1127, 1764, 2246
BseGI	GGATG	5 cut(s)	10, 165, 478, 760, 1971
BseJI	GATNNNNATC	1 cut(s)	1635
BseLI	CCNNNNNNNGG	8 cut(s)	778, 822, 823, 843, 1477, 2107, 2247, 2248
BseMI	GCAATG	3 cut(s)	513, 651, 684
BseMII	CTCAG	3 cut(s)	543, 1343, 1433
BseNI	ACTGG	3 cut(s)	502, 1244, 1393
BseRI	GAGGAG	2 cut(s)	1837, 1993
BseSI	GKGCMC	4 cut(s)	554, 817, 1127, 2182
Bsh1236I	CGCG	2 cut(s)	967, 2209
Bsh1285I	CGRYCG	1 cut(s)	1664
BshFI	GGCC	6 cut(s)	197, 1125, 1227, 1595, 2055, 2240
BshVI	ATCGAT	1 cut(s)	861
BsiEI	CGRYCG	1 cut(s)	1664
BsiHKAI	GWGCWC	4 cut(s)	1266, 1330, 1342, 1531
BsiHKCI	CYCGRG	3 cut(s)	586, 816, 1126
BsiSI	CCGG	3 cut(s)	576, 817, 1127
BslFI	GGGAC	1 cut(s)	629
BslI	CCNNNNNNNGG	8 cut(s)	778, 822, 823, 843, 1477, 2107, 2247, 2248
BsmAI	GTCTC	3 cut(s)	234, 386, 2216
BsmBI	CGTCTC	1 cut(s)	2216
BsmFI	GGGAC	1 cut(s)	629
BsnI	GGCC	6 cut(s)	197, 1125, 1227, 1595, 2055, 2240
BsoBI	CYCGRG	3 cut(s)	586, 816, 1126
Bsp119I	TTCGAA	2 cut(s)	298, 910
Bsp120I	GGGCCC	1 cut(s)	1123
Bsp1286I	GDGCHC	8 cut(s)	554, 817, 1127, 1266, 1330, 1342, 1531, 2182
Bsp1407I	TGTACA	1 cut(s)	139
Bsp143I	GATC	8 cut(s)	315, 591, 660, 858, 976, 1564, 1661, 1894
Bsp1720I	GCTNAGC	1 cut(s)	1329
Bsp19I	CCATGG	1 cut(s)	181
BspACI	CCGC	5 cut(s)	974, 999, 1259, 1843, 2242
BspANI	GGCC	6 cut(s)	197, 1125, 1227, 1595, 2055, 2240
BspCNI	CTCAG	3 cut(s)	542, 1342, 1432
BspDI	ATCGAT	1 cut(s)	861
BspFNI	CGCG	2 cut(s)	967, 2209
BspLI	GGNNCC	4 cut(s)	637, 1125, 1594, 1874
BspMAI	CTGCAG	2 cut(s)	2035, 2094
BspMI	ACCTGC	1 cut(s)	1816
BspPI	GGATC	4 cut(s)	599, 655, 984, 1572
BspT104I	TTCGAA	2 cut(s)	298, 910
BsrBI	CCGCTC	1 cut(s)	1845
BsrDI	GCAATG	3 cut(s)	513, 651, 684
BsrGI	TGTACA	1 cut(s)	139
BsrI	ACTGG	3 cut(s)	502, 1244, 1393
BssECI	CCNNGG	6 cut(s)	181, 816, 1126, 1127, 1764, 2246
BssMI	GATC	8 cut(s)	315, 591, 660, 858, 976, 1564, 1661, 1894
BssNI	GRCGYC	1 cut(s)	1208
BssSI	CACGAG	1 cut(s)	2175
BssT1I	CCWWGG	3 cut(s)	181, 1764, 2246
Bst2BI	CACGAG	1 cut(s)	2175
Bst2UI	CCWGG	2 cut(s)	665, 2108
Bst4CI	ACNGT	6 cut(s)	139, 558, 1006, 1268, 1582, 2026
Bst6I	CTCTTC	2 cut(s)	237, 1436
BstACI	GRCGYC	1 cut(s)	1208
BstAPI	GCANNNNNTGC	5 cut(s)	267, 515, 2039, 2134, 2143
BstAUI	TGTACA	1 cut(s)	139
BstBI	TTCGAA	2 cut(s)	298, 910
BstDEI	CTNAG	5 cut(s)	529, 1329, 1419, 1451, 2222
BstDSI	CCRYGG	1 cut(s)	181
BstEII	GGTNACC	1 cut(s)	1391
BstENI	CCTNNNNNAGG	1 cut(s)	2105
BstF5I	GGATG	5 cut(s)	10, 165, 478, 760, 1971
BstFNI	CGCG	2 cut(s)	967, 2209
BstH2I	RGCGCY	2 cut(s)	874, 2222
BstHHI	GCGC	3 cut(s)	309, 873, 2221
BstKTI	GATC	8 cut(s)	318, 594, 663, 861, 979, 1567, 1664, 1897
BstMAI	GTCTC	3 cut(s)	234, 386, 2216
BstMBI	GATC	8 cut(s)	315, 591, 660, 858, 976, 1564, 1661, 1894
BstMCI	CGRYCG	1 cut(s)	1664
BstNI	CCWGG	2 cut(s)	665, 2108
BstNSI	RCATGY	4 cut(s)	146, 1186, 1786, 1798
BstPI	GGTNACC	1 cut(s)	1391
BstSCI	CCNGG	6 cut(s)	663, 815, 816, 1125, 1126, 2106
BstSFI	CTRYAG	3 cut(s)	1922, 2031, 2090
BstSLI	GKGCMC	4 cut(s)	554, 817, 1127, 2182
BstUI	CGCG	2 cut(s)	967, 2209
BstV2I	GAAGAC	5 cut(s)	221, 735, 791, 1311, 1808
BstX2I	RGATCY	2 cut(s)	591, 976
BstXI	CCANNNNNNTGG	1 cut(s)	1322
BstYI	RGATCY	2 cut(s)	591, 976
Bsu15I	ATCGAT	1 cut(s)	861
BsuRI	GGCC	6 cut(s)	197, 1125, 1227, 1595, 2055, 2240
BsuTUI	ATCGAT	1 cut(s)	861
BtgI	CCRYGG	1 cut(s)	181
BtsCI	GGATG	5 cut(s)	10, 165, 478, 760, 1971
BtsI	GCAGTG	2 cut(s)	639, 2087
BtsIMutI	CAGTG	3 cut(s)	554, 639, 2087
BveI	ACCTGC	1 cut(s)	1816
CaiI	CAGNNNCTG	3 cut(s)	267, 536, 1477
CfoI	GCGC	3 cut(s)	309, 873, 2221
Cfr13I	GGNCC	8 cut(s)	16, 330, 636, 1123, 1124, 1593, 2053, 2239
Cfr9I	CCCGGG	2 cut(s)	816, 1126
ClaI	ATCGAT	1 cut(s)	861
CseI	GACGC	4 cut(s)	73, 785, 1631, 2198
Csp6I	GTAC	3 cut(s)	140, 1088, 1186
CviQI	GTAC	3 cut(s)	140, 1088, 1186
DdeI	CTNAG	5 cut(s)	529, 1329, 1419, 1451, 2222
DpnI	GATC	8 cut(s)	317, 593, 662, 860, 978, 1566, 1663, 1896
DpnII	GATC	8 cut(s)	315, 591, 660, 858, 976, 1564, 1661, 1894
DriI	GACNNNNNGTC	1 cut(s)	775
EaeI	YGGCCR	1 cut(s)	1225
Eam1104I	CTCTTC	2 cut(s)	237, 1436
Eam1105I	GACNNNNNGTC	1 cut(s)	775
EarI	CTCTTC	2 cut(s)	237, 1436
EciI	GGCGGA	1 cut(s)	1274
Ecl136II	GAGCTC	1 cut(s)	1328
Eco130I	CCWWGG	3 cut(s)	181, 1764, 2246
Eco147I	AGGCCT	1 cut(s)	197
Eco24I	GRGCYC	2 cut(s)	1127, 1330
Eco47I	GGWCC	3 cut(s)	16, 330, 636
Eco47III	AGCGCT	2 cut(s)	872, 2220
Eco53kI	GAGCTC	1 cut(s)	1328
Eco57I	CTGAAG	3 cut(s)	1036, 1505, 1965
Eco88I	CYCGRG	3 cut(s)	586, 816, 1126
Eco91I	GGTNACC	1 cut(s)	1391
EcoICRI	GAGCTC	1 cut(s)	1328
EcoNI	CCTNNNNNAGG	1 cut(s)	2105
EcoO109I	RGGNCCY	1 cut(s)	1593
EcoO65I	GGTNACC	1 cut(s)	1391
EcoRI	GAATTC	2 cut(s)	761, 1672
EcoRII	CCWGG	2 cut(s)	663, 2106
EcoT14I	CCWWGG	3 cut(s)	181, 1764, 2246
EcoT38I	GRGCYC	2 cut(s)	1127, 1330
ErhI	CCWWGG	3 cut(s)	181, 1764, 2246
Esp3I	CGTCTC	1 cut(s)	2216
FaqI	GGGAC	1 cut(s)	629
FauI	CCCGC	1 cut(s)	2249
FauNDI	CATATG	1 cut(s)	1465
FblI	GTMKAC	5 cut(s)	355, 494, 1447, 1489, 1992
FokI	GGATG	5 cut(s)	17, 172, 485, 767, 1978
FriOI	GRGCYC	2 cut(s)	1127, 1330
FspBI	CTAG	2 cut(s)	1343, 2247
GlaI	GCGC	3 cut(s)	308, 872, 2220
GsuI	CTGGAG	2 cut(s)	519, 1499
HaeII	RGCGCY	2 cut(s)	874, 2222
HaeIII	GGCC	6 cut(s)	197, 1125, 1227, 1595, 2055, 2240
HapII	CCGG	3 cut(s)	576, 817, 1127
HgaI	GACGC	4 cut(s)	73, 785, 1631, 2198
HhaI	GCGC	3 cut(s)	309, 873, 2221
Hin1I	GRCGYC	1 cut(s)	1208
Hin6I	GCGC	3 cut(s)	307, 871, 2219
HinP1I	GCGC	3 cut(s)	307, 871, 2219
HincII	GTYRAC	2 cut(s)	834, 1448
HindII	GTYRAC	2 cut(s)	834, 1448
HindIII	AAGCTT	4 cut(s)	103, 1496, 1971, 2078
HinfI	GANTC	8 cut(s)	405, 501, 742, 1247, 1355, 1423, 1444, 1839
HpaII	CCGG	3 cut(s)	576, 817, 1127
HphI	GGTGA	3 cut(s)	95, 1256, 1403
Hpy166II	GTNNAC	9 cut(s)	63, 278, 356, 495, 639, 834, 1448, 1490, 1993
Hpy188I	TCNGA	7 cut(s)	213, 781, 846, 1422, 1852, 2157, 2216
Hpy188III	TCNNGA	8 cut(s)	191, 430, 595, 1016, 1028, 1158, 1427, 1861
Hpy8I	GTNNAC	9 cut(s)	63, 278, 356, 495, 639, 834, 1448, 1490, 1993
Hpy99I	CGWCG	4 cut(s)	1210, 1213, 1216, 1413
HpyAV	CCTTC	1 cut(s)	2192
HpyCH4III	ACNGT	6 cut(s)	139, 558, 1006, 1268, 1582, 2026
HpyCH4IV	ACGT	3 cut(s)	426, 1208, 1408
HpyF3I	CTNAG	5 cut(s)	529, 1329, 1419, 1451, 2222
HpySE526I	ACGT	3 cut(s)	426, 1208, 1408
Hsp92I	GRCGYC	1 cut(s)	1208
HspAI	GCGC	3 cut(s)	307, 871, 2219
Kzo9I	GATC	8 cut(s)	315, 591, 660, 858, 976, 1564, 1661, 1894
LmnI	GCTCC	5 cut(s)	846, 1261, 1325, 1337, 1850
LweI	GCATC	7 cut(s)	273, 463, 745, 774, 1012, 1939, 2155
MaeI	CTAG	2 cut(s)	1343, 2247
MaeII	ACGT	3 cut(s)	426, 1208, 1408
MaeIII	GTNAC	4 cut(s)	244, 700, 1217, 1391
MalI	GATC	8 cut(s)	317, 593, 662, 860, 978, 1566, 1663, 1896
MbiI	CCGCTC	1 cut(s)	1845
MboI	GATC	8 cut(s)	315, 591, 660, 858, 976, 1564, 1661, 1894
MfeI	CAATTG	2 cut(s)	2064, 2141
MflI	RGATCY	2 cut(s)	591, 976
MhlI	GDGCHC	8 cut(s)	554, 817, 1127, 1266, 1330, 1342, 1531, 2182
MluCI	AATT	7 cut(s)	761, 921, 1360, 1672, 1701, 2064, 2141
MluI	ACGCGT	1 cut(s)	965
MlyI	GAGTC	2 cut(s)	510, 1453
MmeI	TCCRAC	2 cut(s)	759, 1531
MroXI	GAANNNNTTC	1 cut(s)	452
MseI	TTAA	7 cut(s)	411, 606, 1034, 1058, 1598, 1748, 1889
MslI	CAYNNNNRTG	5 cut(s)	644, 810, 1020, 1320, 1731
MspA1I	CMGCKG	2 cut(s)	290, 1477
MspI	CCGG	3 cut(s)	576, 817, 1127
MspR9I	CCNGG	6 cut(s)	665, 817, 818, 1127, 1128, 2108
MunI	CAATTG	2 cut(s)	2064, 2141
MvaI	CCWGG	2 cut(s)	665, 2108
MvnI	CGCG	2 cut(s)	967, 2209
NciI	CCSGG	4 cut(s)	817, 818, 1127, 1128
NcoI	CCATGG	1 cut(s)	181
NdeI	CATATG	1 cut(s)	1465
NdeII	GATC	8 cut(s)	315, 591, 660, 858, 976, 1564, 1661, 1894
NlaIV	GGNNCC	4 cut(s)	637, 1125, 1594, 1874
NmuCI	GTSAC	3 cut(s)	244, 700, 1391
NspI	RCATGY	4 cut(s)	146, 1186, 1786, 1798
NspV	TTCGAA	2 cut(s)	298, 910
PaqCI	CACCTGC	1 cut(s)	1816
PceI	AGGCCT	1 cut(s)	197
PciI	ACATGT	2 cut(s)	142, 1182
PcsI	WCGNNNNNNNCGW	1 cut(s)	2193
PdmI	GAANNNNTTC	1 cut(s)	452
PfeI	GAWTC	6 cut(s)	405, 742, 1247, 1355, 1423, 1839
PflFI	GACNNNGTC	1 cut(s)	1210
PflMI	CCANNNNNTGG	1 cut(s)	1477
Ple19I	CGATCG	1 cut(s)	1664
PleI	GAGTC	2 cut(s)	509, 1452
PpsI	GAGTC	2 cut(s)	509, 1452
PscI	ACATGT	2 cut(s)	142, 1182
Psp124BI	GAGCTC	1 cut(s)	1330
Psp6I	CCWGG	2 cut(s)	663, 2106
PspEI	GGTNACC	1 cut(s)	1391
PspGI	CCWGG	2 cut(s)	663, 2106
PspN4I	GGNNCC	4 cut(s)	637, 1125, 1594, 1874
PspOMI	GGGCCC	1 cut(s)	1123
PspPI	GGNCC	8 cut(s)	16, 330, 636, 1123, 1124, 1593, 2053, 2239
PstI	CTGCAG	2 cut(s)	2035, 2094
PstNI	CAGNNNCTG	3 cut(s)	267, 536, 1477
PsuI	RGATCY	2 cut(s)	591, 976
PsyI	GACNNNGTC	1 cut(s)	1210
PvuI	CGATCG	1 cut(s)	1664
PvuII	CAGCTG	2 cut(s)	290, 1477
RsaI	GTAC	3 cut(s)	141, 1089, 1187
RsaNI	GTAC	3 cut(s)	140, 1088, 1186
RseI	CAYNNNNRTG	5 cut(s)	644, 810, 1020, 1320, 1731
SacI	GAGCTC	1 cut(s)	1330
SalI	GTCGAC	1 cut(s)	1446
SaqAI	TTAA	7 cut(s)	411, 606, 1034, 1058, 1598, 1748, 1889
Sau3AI	GATC	8 cut(s)	315, 591, 660, 858, 976, 1564, 1661, 1894
Sau96I	GGNCC	8 cut(s)	16, 330, 636, 1123, 1124, 1593, 2053, 2239
SchI	GAGTC	2 cut(s)	510, 1453
ScrFI	CCNGG	6 cut(s)	665, 817, 818, 1127, 1128, 2108
SduI	GDGCHC	8 cut(s)	554, 817, 1127, 1266, 1330, 1342, 1531, 2182
SfaNI	GCATC	7 cut(s)	273, 463, 745, 774, 1012, 1939, 2155
SfcI	CTRYAG	3 cut(s)	1922, 2031, 2090
SfuI	TTCGAA	2 cut(s)	298, 910
SinI	GGWCC	3 cut(s)	16, 330, 636
SmaI	CCCGGG	2 cut(s)	818, 1128
SmiMI	CAYNNNNRTG	5 cut(s)	644, 810, 1020, 1320, 1731
SmlI	CTYRAG	4 cut(s)	1039, 1508, 1859, 1880
SmoI	CTYRAG	4 cut(s)	1039, 1508, 1859, 1880
SpeI	ACTAGT	1 cut(s)	1342
SrfI	GCCCGGGC	1 cut(s)	818
Sse9I	AATT	7 cut(s)	761, 921, 1360, 1672, 1701, 2064, 2141
SseBI	AGGCCT	1 cut(s)	197
SsiI	CCGC	5 cut(s)	974, 999, 1259, 1843, 2242
SspMI	CTAG	2 cut(s)	1343, 2247
SstI	GAGCTC	1 cut(s)	1330
StuI	AGGCCT	1 cut(s)	197
StyD4I	CCNGG	6 cut(s)	663, 815, 816, 1125, 1126, 2106
StyI	CCWWGG	3 cut(s)	181, 1764, 2246
TaaI	ACNGT	6 cut(s)	139, 558, 1006, 1268, 1582, 2026
TaiI	ACGT	3 cut(s)	429, 1211, 1411
TaqII	GACCGA	2 cut(s)	318, 1292
TasI	AATT	7 cut(s)	761, 921, 1360, 1672, 1701, 2064, 2141
TatI	WGTACW	1 cut(s)	139
TfiI	GAWTC	6 cut(s)	405, 742, 1247, 1355, 1423, 1839
Tru1I	TTAA	7 cut(s)	411, 606, 1034, 1058, 1598, 1748, 1889
Tru9I	TTAA	7 cut(s)	411, 606, 1034, 1058, 1598, 1748, 1889
TscAI	CASTG	3 cut(s)	561, 646, 2094
TseFI	GTSAC	3 cut(s)	244, 700, 1391
Tsp45I	GTSAC	3 cut(s)	244, 700, 1391
TspDTI	ATGAA	8 cut(s)	239, 371, 734, 932, 1647, 1685, 1694, 2217
TspMI	CCCGGG	2 cut(s)	816, 1126
TspRI	CASTG	3 cut(s)	561, 646, 2094
Tth111I	GACNNNGTC	1 cut(s)	1210
Van91I	CCANNNNNTGG	1 cut(s)	1477
VpaK11BI	GGWCC	3 cut(s)	16, 330, 636
XagI	CCTNNNNNAGG	1 cut(s)	2105
XapI	RAATTY	3 cut(s)	761, 1672, 1701
XceI	RCATGY	4 cut(s)	146, 1186, 1786, 1798
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1787
XmaI	CCCGGG	2 cut(s)	816, 1126
XmaJI	CCTAGG	1 cut(s)	2246
XmiI	GTMKAC	5 cut(s)	355, 494, 1447, 1489, 1992
XmnI	GAANNNNTTC	1 cut(s)	452
XspI	CTAG	2 cut(s)	1343, 2247
ZraI	GACGTC	1 cut(s)	1209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.