Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008955

Physical Location & Seq

Genomic Coordinates Reverse (-)

46032005 .. 46032581

Gene Structure 577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0287100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAAGAAGGCAGGGTGGGCTAAGAAGGCGCAGGTGGCCGAGGTTGAGGCGGAGAAGGCGGTGGCGATGAAGGATGCCGAGTTGCAGAAGGAGGTGGAGAGGATGAATGCATTGACTATGACTGAGAAGCTCAAGGCTGACTTCTTGAGCAAGGGTACTGTCGAATATGAAACCAAGGTACAAGAGGCAAATTGGGGGTTGTACAAGCAACAAAAAGAGGCGGAAGCAATTCTTTACCGGAGGGAGCAAAGTCACCAGAAATGCTCTACCTGCCGGCGACCCGCGTTCCGGATCGCACGAACCCAATCGCAGGGCGTTCGCGATCCGGATCGGCAAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009909 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1 bZIP_2

Protein Analysis

113

Amino Acids

13.03

Weight (kDa)

9.42

Isoelectric Point (pI)

35.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68640
fragaria_vesca	FvH4_4g27750 FvH4_4g27750
malus_domestica	MD13G1044600.v1.1 MD16G1046000.v1.1
prunus_persica	Prupe.1G307300_v2.0.a1 Prupe.1G307300_v2.0.a1 Prupe.1G307300_v2.0.a1 Prupe.1G307300_v2.0.a1 Prupe.1G307300_v2.0.a1
pyrus_communis	pycom13g03950 pycom16g04060
rosa_chinensis	RchiOBHm_Chr4g0435611
rosa_laevigata	RLG00000006577
rosa_multiflora	Rmu_sc0000051.1_g000002
rosa_roxburghii	Rroxscaffold_5G00376840
rosa_rugosa	Rorug04G0287100
rosa_samantha	Rh4AG342400 Rh4BG350700 Rh4CG365400 Rh4DG345000
rosa_wichuraiana	Rw4G029880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	22
Acc36I	ACCTGC	2 cut(s)	22, 278
AccII	CGCG	2 cut(s)	284, 321
AccIII	TCCGGA	2 cut(s)	288, 325
AciI	CCGC	4 cut(s)	50, 59, 221, 282
AclWI	GGATC	3 cut(s)	299, 317, 336
AcoI	YGGCCR	1 cut(s)	36
AfaI	GTAC	3 cut(s)	157, 180, 203
AfiI	CCNNNNNNNGG	2 cut(s)	288, 310
AluBI	AGCT	1 cut(s)	130
AluI	AGCT	1 cut(s)	130
AlwI	GGATC	3 cut(s)	299, 317, 336
Aor13HI	TCCGGA	2 cut(s)	288, 325
AoxI	GGCC	1 cut(s)	36
Asp700I	GAANNNNTTC	1 cut(s)	228
AspLEI	GCGC	1 cut(s)	31
AsuHPI	GGTGA	1 cut(s)	245
BcgI	CGANNNNNNTGC	2 cut(s)	299, 333
BfuAI	ACCTGC	2 cut(s)	22, 278
BmsI	GCATC	1 cut(s)	64
BpuEI	CTTGAG	2 cut(s)	116, 166
BsaBI	GATNNNNATC	1 cut(s)	327
BsaJI	CCNNGG	2 cut(s)	39, 174
BsaWI	WCCGGW	3 cut(s)	237, 288, 325
Bsc4I	CCNNNNNNNGG	2 cut(s)	288, 310
Bse118I	RCCGGY	1 cut(s)	273
Bse8I	GATNNNNATC	1 cut(s)	327
BseAI	TCCGGA	2 cut(s)	288, 325
BseDI	CCNNGG	2 cut(s)	39, 174
BseGI	GGATG	2 cut(s)	79, 108
BseJI	GATNNNNATC	1 cut(s)	327
BseLI	CCNNNNNNNGG	2 cut(s)	288, 310
BseMII	CTCAG	1 cut(s)	114
Bsh1236I	CGCG	2 cut(s)	284, 321
BshFI	GGCC	1 cut(s)	38
BsiSI	CCGG	4 cut(s)	238, 274, 289, 326
BslI	CCNNNNNNNGG	2 cut(s)	288, 310
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	1 cut(s)	38
Bsp13I	TCCGGA	2 cut(s)	288, 325
Bsp1407I	TGTACA	1 cut(s)	201
Bsp143I	GATC	3 cut(s)	291, 322, 328
Bsp68I	TCGCGA	1 cut(s)	321
BspACI	CCGC	4 cut(s)	50, 59, 221, 282
BspANI	GGCC	1 cut(s)	38
BspCNI	CTCAG	1 cut(s)	115
BspEI	TCCGGA	2 cut(s)	288, 325
BspFNI	CGCG	2 cut(s)	284, 321
BspMI	ACCTGC	2 cut(s)	22, 278
BspPI	GGATC	3 cut(s)	299, 317, 336
BsrFI	RCCGGY	1 cut(s)	273
BsrGI	TGTACA	1 cut(s)	201
BssAI	RCCGGY	1 cut(s)	273
BssECI	CCNNGG	2 cut(s)	39, 174
BssMI	GATC	3 cut(s)	291, 322, 328
BssT1I	CCWWGG	1 cut(s)	174
Bst4CI	ACNGT	1 cut(s)	160
BstAUI	TGTACA	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	275
BstDEI	CTNAG	2 cut(s)	21, 123
BstF5I	GGATG	2 cut(s)	79, 108
BstFNI	CGCG	2 cut(s)	284, 321
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	3 cut(s)	294, 325, 331
BstMBI	GATC	3 cut(s)	291, 322, 328
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 26, 35, 56, 270
BstUI	CGCG	2 cut(s)	284, 321
BsuRI	GGCC	1 cut(s)	38
BtgZI	GCGATG	1 cut(s)	80
BtsCI	GGATG	2 cut(s)	79, 108
BtuMI	TCGCGA	1 cut(s)	321
BveI	ACCTGC	2 cut(s)	22, 278
Cac8I	GCNNGC	1 cut(s)	275
CfoI	GCGC	1 cut(s)	31
Cfr10I	RCCGGY	1 cut(s)	273
Csp6I	GTAC	3 cut(s)	156, 179, 202
CviJI	RGCY	4 cut(s)	20, 38, 130, 137
CviKI_1	RGCY	4 cut(s)	20, 38, 130, 137
CviQI	GTAC	3 cut(s)	156, 179, 202
DdeI	CTNAG	2 cut(s)	21, 123
DpnI	GATC	3 cut(s)	293, 324, 330
DpnII	GATC	3 cut(s)	291, 322, 328
EaeI	YGGCCR	1 cut(s)	36
EciI	GGCGGA	2 cut(s)	65, 236
Eco130I	CCWWGG	1 cut(s)	174
EcoT14I	CCWWGG	1 cut(s)	174
EcoT22I	ATGCAT	1 cut(s)	112
ErhI	CCWWGG	1 cut(s)	174
FaiI	YATR	3 cut(s)	119, 168, 340
FalI	AAGNNNNNCTT	4 cut(s)	125, 157, 216, 248
FauI	CCCGC	1 cut(s)	289
FokI	GGATG	2 cut(s)	86, 115
GlaI	GCGC	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	38
HapII	CCGG	4 cut(s)	238, 274, 289, 326
HhaI	GCGC	1 cut(s)	31
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HpaII	CCGG	4 cut(s)	238, 274, 289, 326
HphI	GGTGA	1 cut(s)	245
Hpy188III	TCNNGA	4 cut(s)	145, 289, 320, 326
HpyAV	CCTTC	4 cut(s)	19, 49, 64, 82
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4V	TGCA	2 cut(s)	85, 110
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 26, 35, 56, 270
HpyF3I	CTNAG	2 cut(s)	21, 123
HspAI	GCGC	1 cut(s)	29
Kpn2I	TCCGGA	2 cut(s)	288, 325
KroI	GCCGGC	1 cut(s)	273
KroNI	GCCGGC	1 cut(s)	275
Kzo9I	GATC	3 cut(s)	291, 322, 328
LmnI	GCTCC	1 cut(s)	244
LpnPI	CCDG	7 cut(s)	17, 251, 269, 283, 287, 296, 302
LweI	GCATC	1 cut(s)	64
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	3 cut(s)	293, 324, 330
MboI	GATC	3 cut(s)	291, 322, 328
MboII	GAAGA	1 cut(s)	16
MluCI	AATT	2 cut(s)	190, 228
MnlI	CCTC	7 cut(s)	34, 40, 85, 93, 178, 211, 234
Mph1103I	ATGCAT	1 cut(s)	112
MroI	TCCGGA	2 cut(s)	288, 325
MroNI	GCCGGC	1 cut(s)	273
MroXI	GAANNNNTTC	1 cut(s)	228
MspI	CCGG	4 cut(s)	238, 274, 289, 326
Mva1269I	GAATGC	1 cut(s)	112
MvnI	CGCG	2 cut(s)	284, 321
MwoI	GCNNNNNNNGC	5 cut(s)	17, 26, 35, 56, 270
NaeI	GCCGGC	1 cut(s)	275
NdeII	GATC	3 cut(s)	291, 322, 328
NgoMIV	GCCGGC	1 cut(s)	273
NmeAIII	GCCGAG	2 cut(s)	64, 103
NmuCI	GTSAC	1 cut(s)	251
NruI	TCGCGA	1 cut(s)	321
NsiI	ATGCAT	1 cut(s)	112
PaqCI	CACCTGC	1 cut(s)	22
PctI	GAATGC	1 cut(s)	112
PdiI	GCCGGC	1 cut(s)	275
PdmI	GAANNNNTTC	1 cut(s)	228
RruI	TCGCGA	1 cut(s)	321
RsaI	GTAC	3 cut(s)	157, 180, 203
RsaNI	GTAC	3 cut(s)	156, 179, 202
Sau3AI	GATC	3 cut(s)	291, 322, 328
SetI	ASST	6 cut(s)	36, 45, 96, 132, 180, 272
SfaNI	GCATC	1 cut(s)	64
SmlI	CTYRAG	2 cut(s)	131, 145
SmoI	CTYRAG	2 cut(s)	131, 145
Sse9I	AATT	2 cut(s)	190, 228
SsiI	CCGC	4 cut(s)	50, 59, 221, 282
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	160
TaqI	TCGA	1 cut(s)	162
TasI	AATT	2 cut(s)	190, 228
TatI	WGTACW	1 cut(s)	201
TseFI	GTSAC	1 cut(s)	251
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	4 cut(s)	17, 83, 119, 183
XmnI	GAANNNNTTC	1 cut(s)	228
Zsp2I	ATGCAT	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.