Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009871

Physical Location & Seq

Genomic Coordinates Reverse (-)

26063662 .. 26065518

Gene Structure 1857 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G69330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGTGGGGCTTTGCGTCGAATGTCATTGGAAGTATGGGGTTAAAGAAGTCCCCTAAAGATTCAGCTCAAGCATCCTCTCAATGCTCAGATGATGAGGTTTCAAATATTAGCAGGGATGAAGAGGGATTAGAATGTCCCATATGTTGGGAATCTTTCAACATTGTTGAGAATGTTCCTTATGTGTTATGGTGTGGTCATACTCTTTGCCAGAATTGTGTCTTTGGTCTCCAATCTGCTGTCTTGAGACTCTCAAGCCAAGATATTCGGATTCCGTTTTTCGTCTCGTGCCCGTGGTGTCAGTTGCTTTCGTTCAGGATTGTTTACAAGGGTAATCTAAAGTTCCCTCGGAAGAATTTCTTCCTTCTCTGGATGGTTGAGAGTCTGAATGGTGACAGGACAAGTCATGGTGACAGGACAAGTCATGGTTCCTTGGTCACTGATAACCAGCAATCGGCTCCGACTCCGAGGTGTAGCATGTCTCTGGGAAACCACAGCAGCAACAACAATCTGGTTGCGAGGCCTTTATTGCGTAACCAGTCTACAGACCTTTTGCCACATCATGACCACAGTAACCAACCAAGCAGACAACTCTTCTCCTTTCACAAATCTCTTGATTTTTTCATCTCTTTCACCTCCAAGTTTCCGTTTGTGATCATCTTCCTTCTGATCGTATTCTTTGCTATACCTGGTAGCCTCATAATTCTTGCCCTTTACTTCCTCCTCACAATACTTTTCGCAGTTCCAGCTGGTCTTGTACTATATTTTGCTTATCCTATTCTAGAAAGGTTGGTAAATGAAATAACATCATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_UBOX

Protein Analysis

270

Amino Acids

30.42

Weight (kDa)

7.06

Isoelectric Point (pI)

46.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_5	PF14634	44 - 86	4.6e-06	zinc-RING finger domain
zf-RING_UBOX	PF13445	45 - 78	4e-08	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69330
fragaria_vesca	FvH4_4g30433 FvH4_4g30433
malus_domestica	MD13G1065500.v1.1 MD16G1064000.v1.1
prunus_persica	Prupe.1G282600_v2.0.a1 Prupe.1G282600_v2.0.a1 Prupe.1G282600_v2.0.a1
pyrus_communis	pycom16g05610
rosa_chinensis	RchiOBHm_Chr4g0438761
rosa_laevigata	RLG00000006331
rosa_multiflora	Rmu_sc0002505.1_g000009
rosa_roxburghii	Rroxscaffold_5G00379790
rosa_rugosa	Rorug04G0313000 Rorug04G0313100
rosa_samantha	Rh4AG363700 Rh4BG375200 Rh4CG389300 Rh4DG369500
rosa_wichuraiana	Rw0G007220 Rw0G016770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	144
AccI	GTMKAC	1 cut(s)	539
AcsI	RAATTY	1 cut(s)	352
AfaI	GTAC	1 cut(s)	756
AfiI	CCNNNNNNNGG	2 cut(s)	144, 451
AgsI	TTSAA	2 cut(s)	102, 157
AjnI	CCWGG	1 cut(s)	685
AluBI	AGCT	2 cut(s)	65, 746
AluI	AGCT	2 cut(s)	65, 746
Alw26I	GTCTC	4 cut(s)	230, 238, 286, 483
AoxI	GGCC	1 cut(s)	518
ApeKI	GCWGC	1 cut(s)	495
ApoI	RAATTY	1 cut(s)	352
Asp700I	GAANNNNTTC	2 cut(s)	353, 356
AsuHPI	GGTGA	3 cut(s)	401, 419, 622
BaeGI	GKGCMC	1 cut(s)	290
BauI	CACGAG	1 cut(s)	283
BbvI	GCAGC	1 cut(s)	507
BccI	CCATC	1 cut(s)	364
BciT130I	CCWGG	1 cut(s)	687
BclI	TGATCA	1 cut(s)	651
BcoDI	GTCTC	4 cut(s)	230, 238, 286, 483
BfaI	CTAG	1 cut(s)	779
BfmI	CTRYAG	1 cut(s)	540
BisI	GCNGC	1 cut(s)	496
BlsI	GCNGC	1 cut(s)	497
Bme1390I	CCNGG	1 cut(s)	687
BmiI	GGNNCC	2 cut(s)	427, 456
BmrFI	CCNGG	1 cut(s)	687
BmsI	GCATC	1 cut(s)	80
BpuEI	CTTGAG	3 cut(s)	51, 235, 262
BsaI	GGTCTC	1 cut(s)	230
BsaJI	CCNNGG	4 cut(s)	290, 344, 429, 464
Bsc4I	CCNNNNNNNGG	2 cut(s)	144, 451
Bse1I	ACTGG	1 cut(s)	535
BseBI	CCWGG	1 cut(s)	687
BseDI	CCNNGG	4 cut(s)	290, 344, 429, 464
BseGI	GGATG	3 cut(s)	71, 121, 375
BseLI	CCNNNNNNNGG	2 cut(s)	144, 451
BseMII	CTCAG	1 cut(s)	99
BseNI	ACTGG	1 cut(s)	535
BseRI	GAGGAG	1 cut(s)	710
BseSI	GKGCMC	1 cut(s)	290
BseXI	GCAGC	1 cut(s)	507
BshFI	GGCC	1 cut(s)	520
BslFI	GGGAC	2 cut(s)	34, 120
BslI	CCNNNNNNNGG	2 cut(s)	144, 451
BsmAI	GTCTC	4 cut(s)	230, 238, 286, 483
BsmBI	CGTCTC	1 cut(s)	286
BsmFI	GGGAC	2 cut(s)	34, 120
BsnI	GGCC	1 cut(s)	520
Bso31I	GGTCTC	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	290
Bsp143I	GATC	2 cut(s)	651, 666
BspANI	GGCC	1 cut(s)	520
BspCNI	CTCAG	1 cut(s)	98
BspHI	TCATGA	2 cut(s)	559, 809
BspLI	GGNNCC	2 cut(s)	427, 456
BspTNI	GGTCTC	1 cut(s)	230
BsrI	ACTGG	1 cut(s)	535
BssECI	CCNNGG	4 cut(s)	290, 344, 429, 464
BssMI	GATC	2 cut(s)	651, 666
BssSI	CACGAG	1 cut(s)	283
BssT1I	CCWWGG	1 cut(s)	429
Bst2BI	CACGAG	1 cut(s)	283
Bst2UI	CCWGG	1 cut(s)	687
Bst4CI	ACNGT	1 cut(s)	569
Bst6I	CTCTTC	2 cut(s)	114, 596
BstDEI	CTNAG	1 cut(s)	85
BstDSI	CCRYGG	1 cut(s)	290
BstF5I	GGATG	3 cut(s)	71, 121, 375
BstKTI	GATC	2 cut(s)	654, 669
BstMAI	GTCTC	4 cut(s)	230, 238, 286, 483
BstMBI	GATC	2 cut(s)	651, 666
BstMWI	GCNNNNNNNGC	2 cut(s)	526, 743
BstNI	CCWGG	1 cut(s)	687
BstNSI	RCATGY	1 cut(s)	478
BstSCI	CCNGG	1 cut(s)	685
BstSFI	CTRYAG	1 cut(s)	540
BstSLI	GKGCMC	1 cut(s)	290
BstV1I	GCAGC	1 cut(s)	507
BsuRI	GGCC	1 cut(s)	520
BtgI	CCRYGG	1 cut(s)	290
BtsCI	GGATG	3 cut(s)	71, 121, 375
BtsIMutI	CAGTG	1 cut(s)	435
CciI	TCATGA	2 cut(s)	559, 809
CseI	GACGC	1 cut(s)	3
CsiI	ACCWGGT	1 cut(s)	685
Csp6I	GTAC	1 cut(s)	755
CviAII	CATG	5 cut(s)	404, 422, 475, 560, 810
CviJI	RGCY	7 cut(s)	9, 65, 255, 455, 520, 693, 746
CviKI_1	RGCY	7 cut(s)	9, 65, 255, 455, 520, 693, 746
CviQI	GTAC	1 cut(s)	755
DdeI	CTNAG	1 cut(s)	85
DpnI	GATC	2 cut(s)	653, 668
DpnII	GATC	2 cut(s)	651, 666
Eam1104I	CTCTTC	2 cut(s)	114, 596
EarI	CTCTTC	2 cut(s)	114, 596
Eco130I	CCWWGG	1 cut(s)	429
Eco147I	AGGCCT	1 cut(s)	520
Eco31I	GGTCTC	1 cut(s)	230
EcoRII	CCWGG	1 cut(s)	685
EcoT14I	CCWWGG	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	429
Esp3I	CGTCTC	1 cut(s)	286
FaeI	CATG	5 cut(s)	407, 425, 478, 563, 813
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FaqI	GGGAC	2 cut(s)	34, 120
FatI	CATG	5 cut(s)	403, 421, 474, 559, 809
FauNDI	CATATG	1 cut(s)	140
FbaI	TGATCA	1 cut(s)	651
FblI	GTMKAC	1 cut(s)	539
Fnu4HI	GCNGC	1 cut(s)	496
FokI	GGATG	3 cut(s)	58, 128, 382
Fsp4HI	GCNGC	1 cut(s)	496
FspBI	CTAG	1 cut(s)	779
GluI	GCNGC	1 cut(s)	496
HaeIII	GGCC	1 cut(s)	520
HgaI	GACGC	1 cut(s)	3
Hin1II	CATG	5 cut(s)	407, 425, 478, 563, 813
HinfI	GANTC	6 cut(s)	59, 149, 246, 268, 379, 460
HphI	GGTGA	3 cut(s)	401, 419, 622
Hpy166II	GTNNAC	2 cut(s)	322, 540
Hpy188I	TCNGA	7 cut(s)	88, 267, 348, 384, 459, 465, 666
Hpy188III	TCNNGA	7 cut(s)	241, 313, 367, 560, 611, 779, 810
Hpy8I	GTNNAC	2 cut(s)	322, 540
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	2 cut(s)	371, 671
HpyCH4III	ACNGT	1 cut(s)	569
HpyF10VI	GCNNNNNNNGC	2 cut(s)	526, 743
HpyF3I	CTNAG	1 cut(s)	85
Hsp92II	CATG	5 cut(s)	407, 425, 478, 563, 813
Ksp22I	TGATCA	1 cut(s)	651
Kzo9I	GATC	2 cut(s)	651, 666
LmnI	GCTCC	1 cut(s)	460
Lsp1109I	GCAGC	1 cut(s)	507
LweI	GCATC	1 cut(s)	80
MabI	ACCWGGT	1 cut(s)	685
MaeI	CTAG	1 cut(s)	779
MaeIII	GTNAC	5 cut(s)	389, 407, 433, 530, 569
MalI	GATC	2 cut(s)	653, 668
MboI	GATC	2 cut(s)	651, 666
MboII	GAAGA	5 cut(s)	131, 349, 361, 583, 649
MhlI	GDGCHC	1 cut(s)	290
MluCI	AATT	3 cut(s)	211, 352, 699
MlyI	GAGTC	3 cut(s)	240, 388, 454
MmeI	TCCRAC	1 cut(s)	482
MroXI	GAANNNNTTC	2 cut(s)	353, 356
MseI	TTAA	1 cut(s)	41
MslI	CAYNNNNRTG	1 cut(s)	808
MspA1I	CMGCKG	1 cut(s)	746
MspR9I	CCNGG	1 cut(s)	687
MvaI	CCWGG	1 cut(s)	687
MwoI	GCNNNNNNNGC	2 cut(s)	526, 743
NdeI	CATATG	1 cut(s)	140
NdeII	GATC	2 cut(s)	651, 666
NlaIII	CATG	5 cut(s)	407, 425, 478, 563, 813
NlaIV	GGNNCC	2 cut(s)	427, 456
NmuCI	GTSAC	3 cut(s)	389, 407, 433
NspI	RCATGY	1 cut(s)	478
PagI	TCATGA	2 cut(s)	559, 809
PceI	AGGCCT	1 cut(s)	520
PdmI	GAANNNNTTC	2 cut(s)	353, 356
PfeI	GAWTC	3 cut(s)	59, 149, 268
PflMI	CCANNNNNTGG	1 cut(s)	144
PkrI	GCNGC	1 cut(s)	497
PleI	GAGTC	3 cut(s)	240, 387, 454
PpsI	GAGTC	3 cut(s)	240, 387, 454
Psp6I	CCWGG	1 cut(s)	685
PspGI	CCWGG	1 cut(s)	685
PspN4I	GGNNCC	2 cut(s)	427, 456
PvuII	CAGCTG	1 cut(s)	746
RsaI	GTAC	1 cut(s)	756
RsaNI	GTAC	1 cut(s)	755
RseI	CAYNNNNRTG	1 cut(s)	808
SaqAI	TTAA	1 cut(s)	41
SatI	GCNGC	1 cut(s)	496
Sau3AI	GATC	2 cut(s)	651, 666
SchI	GAGTC	3 cut(s)	240, 388, 454
ScrFI	CCNGG	1 cut(s)	687
SduI	GDGCHC	1 cut(s)	290
SetI	ASST	8 cut(s)	67, 99, 470, 549, 635, 688, 748, 788
SexAI	ACCWGGT	1 cut(s)	685
SfaNI	GCATC	1 cut(s)	80
SfcI	CTRYAG	1 cut(s)	540
SmiMI	CAYNNNNRTG	1 cut(s)	808
SmlI	CTYRAG	3 cut(s)	66, 241, 250
SmoI	CTYRAG	3 cut(s)	66, 241, 250
Sse9I	AATT	3 cut(s)	211, 352, 699
SseBI	AGGCCT	1 cut(s)	520
SspI	AATATT	1 cut(s)	106
SspMI	CTAG	1 cut(s)	779
StuI	AGGCCT	1 cut(s)	520
StyD4I	CCNGG	1 cut(s)	685
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	1 cut(s)	569
TaqI	TCGA	1 cut(s)	17
TasI	AATT	3 cut(s)	211, 352, 699
TatI	WGTACW	1 cut(s)	754
TfiI	GAWTC	3 cut(s)	59, 149, 268
Tru1I	TTAA	1 cut(s)	41
Tru9I	TTAA	1 cut(s)	41
TscAI	CASTG	1 cut(s)	442
TseFI	GTSAC	3 cut(s)	389, 407, 433
TseI	GCWGC	1 cut(s)	495
Tsp45I	GTSAC	3 cut(s)	389, 407, 433
TspDTI	ATGAA	3 cut(s)	132, 610, 810
TspGWI	ACGGA	2 cut(s)	261, 633
TspRI	CASTG	1 cut(s)	442
Van91I	CCANNNNNTGG	1 cut(s)	144
XapI	RAATTY	1 cut(s)	352
XbaI	TCTAGA	1 cut(s)	778
XceI	RCATGY	1 cut(s)	478
XmiI	GTMKAC	1 cut(s)	539
XmnI	GAANNNNTTC	2 cut(s)	353, 356
XspI	CTAG	1 cut(s)	779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.