RchiOBHm_Chr4g0438761

RING-type zinc-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0009871
Physical Location & Seq
Reverse (-)
61343892 .. 61345654
1763 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40687

Sequence Viewer

Length: 789 bp
ATGTGGGGCTTTGCTTCTAATGCCATTACGAGCATTGGACTTAGAAGAAGTTCGTCAGAGCCGAGCCGGGTGTTATTGGACTCCTCGGATGATGAACTTTGCTCGAATTCAAGCCGAGAGGAAGGGCTAGAATGCCCTATTTGCTTGGAATCTTTCAACATTGTCGAGAATGTGCCCCATGTATTATGGTGCGGTCATACCCTCTGCAGAAATTGTGTCTTGGCGCTTCAGTGGGCTGTCTTCAGATTCTCGACTCAAAAATTTAAGATCCCATTTTTCATTTCTTGCCCGTGGTGCCACCTGTTTTCTTTGCGGCTGGTTTATAAGGGGAATCTAAAGTTTCCTCGCAAGAATTTCTTCCTTCTATGGATGGTTGAGAGCTTCAATGGTGATAGGGCGAAGTTTGGTCCTGCCTTGAATGGGGAAAATCAACAAATTAGTTCTCCAAGAGTCAACTTGGCTAGTGGAAATCAAGCTGGGAATAGTAACCTGAGGAGGAACCATTCTAGTTGTCCTTTGCTGTCAAGGTATAATGGTGTTGATGATGGTGGCCGTGTGGACCGGCATCATTTCTCCCTTCACAAGTCTTTGGATTGCTTCATTCACATTACATCCAAGTTCCCATTAGTTATAGGGCTTCTGTTGATTGTCTTTTGCGTAATACCTGGCAGTGCTATAATTTTGGTGCTCTACTTGCTACTCACAGTTCTTTTTGCAATCCCATCTGCCTTGGTACTGTACTTCGCATATCCTACTCTGGAGAGGCTGGTGAGGGAGATAACCTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_UBOX

Protein Analysis

262

Amino Acids

29.53

Weight (kDa)

8.8

Isoelectric Point (pI)

46.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_UBOX PF13445 45 - 89 5.6e-09 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 324
AccB1I GGYRCC 1 cut(s) 294
AciI CCGC 2 cut(s) 192, 313
AclWI GGATC 1 cut(s) 262
AcoI YGGCCR 1 cut(s) 550
AcsI RAATTY 3 cut(s) 106, 260, 352
AcuI CTGAAG 2 cut(s) 212, 226
AfaI GTAC 2 cut(s) 735, 740
AfiI CCNNNNNNNGG 1 cut(s) 420
AgsI TTSAA 4 cut(s) 111, 157, 385, 418
AjnI CCWGG 1 cut(s) 664
AluBI AGCT 2 cut(s) 381, 476
AluI AGCT 2 cut(s) 381, 476
Alw21I GWGCWC 1 cut(s) 690
AlwI GGATC 1 cut(s) 262
AoxI GGCC 1 cut(s) 550
ApoI RAATTY 3 cut(s) 106, 260, 352
Asp700I GAANNNNTTC 2 cut(s) 49, 356
AspLEI GCGC 1 cut(s) 226
AspS9I GGNCC 2 cut(s) 407, 559
AsuC2I CCSGG 1 cut(s) 68
AsuHPI GGTGA 2 cut(s) 401, 781
AvaII GGWCC 2 cut(s) 407, 559
AxyI CCTNAGG 1 cut(s) 491
BaeGI GKGCMC 1 cut(s) 177
BanI GGYRCC 1 cut(s) 294
BauI CACGAG 1 cut(s) 784
BbsI GAAGAC 1 cut(s) 232
Bbv12I GWGCWC 1 cut(s) 690
BccI CCATC 3 cut(s) 364, 539, 730
BceAI ACGGC 1 cut(s) 537
BciT130I CCWGG 1 cut(s) 666
BcnI CCSGG 1 cut(s) 68
BfaI CTAG 3 cut(s) 128, 462, 507
BfmI CTRYAG 1 cut(s) 205
BfoI RGCGCY 1 cut(s) 227
BisI GCNGC 1 cut(s) 314
BlsI GCNGC 1 cut(s) 315
Bme1390I CCNGG 2 cut(s) 68, 666
Bme18I GGWCC 2 cut(s) 407, 559
BmgT120I GGNCC 2 cut(s) 407, 559
BmiI GGNNCC 2 cut(s) 296, 500
BmrFI CCNGG 2 cut(s) 68, 666
BmsI GCATC 1 cut(s) 574
BpiI GAAGAC 1 cut(s) 232
BplI GAGNNNNNCTC 1 cut(s) 767
BpmI CTGGAG 1 cut(s) 779
BpuMI CCSGG 1 cut(s) 68
BsaJI CCNNGG 3 cut(s) 84, 290, 729
Bsc4I CCNNNNNNNGG 1 cut(s) 420
Bse118I RCCGGY 1 cut(s) 561
Bse21I CCTNAGG 1 cut(s) 491
BseBI CCWGG 1 cut(s) 666
BseDI CCNNGG 3 cut(s) 84, 290, 729
BseGI GGATG 3 cut(s) 94, 375, 611
BseLI CCNNNNNNNGG 1 cut(s) 420
BseMII CTCAG 1 cut(s) 482
BseRI GAGGAG 2 cut(s) 73, 508
BseSI GKGCMC 1 cut(s) 177
BseYI CCCAGC 1 cut(s) 476
BshFI GGCC 1 cut(s) 552
BshNI GGYRCC 1 cut(s) 294
BsiHKAI GWGCWC 1 cut(s) 690
BsiSI CCGG 2 cut(s) 67, 562
BslI CCNNNNNNNGG 1 cut(s) 420
BsmI GAATGC 1 cut(s) 137
BsnI GGCC 1 cut(s) 552
Bsp1286I GDGCHC 2 cut(s) 177, 690
Bsp143I GATC 1 cut(s) 267
BspACI CCGC 2 cut(s) 192, 313
BspANI GGCC 1 cut(s) 552
BspCNI CTCAG 1 cut(s) 483
BspLI GGNNCC 2 cut(s) 296, 500
BspMAI CTGCAG 1 cut(s) 209
BspPI GGATC 1 cut(s) 262
BspT107I GGYRCC 1 cut(s) 294
BsrFI RCCGGY 1 cut(s) 561
BssAI RCCGGY 1 cut(s) 561
BssECI CCNNGG 3 cut(s) 84, 290, 729
BssMI GATC 1 cut(s) 267
BssSI CACGAG 1 cut(s) 784
BssT1I CCWWGG 1 cut(s) 729
Bst2BI CACGAG 1 cut(s) 784
Bst2UI CCWGG 1 cut(s) 666
Bst4CI ACNGT 2 cut(s) 706, 738
BstDEI CTNAG 2 cut(s) 41, 491
BstDSI CCRYGG 1 cut(s) 290
BstF5I GGATG 3 cut(s) 94, 375, 611
BstH2I RGCGCY 1 cut(s) 227
BstHHI GCGC 1 cut(s) 226
BstKTI GATC 1 cut(s) 270
BstMBI GATC 1 cut(s) 267
BstMWI GCNNNNNNNGC 4 cut(s) 20, 141, 294, 694
BstNI CCWGG 1 cut(s) 666
BstSCI CCNGG 2 cut(s) 66, 664
BstSFI CTRYAG 1 cut(s) 205
BstSLI GKGCMC 1 cut(s) 177
BstV2I GAAGAC 1 cut(s) 232
BstX2I RGATCY 1 cut(s) 267
BstYI RGATCY 1 cut(s) 267
Bsu36I CCTNAGG 1 cut(s) 491
BsuRI GGCC 1 cut(s) 552
BtgI CCRYGG 1 cut(s) 290
BtsCI GGATG 3 cut(s) 94, 375, 611
BtsI GCAGTG 1 cut(s) 676
BtsIMutI CAGTG 2 cut(s) 236, 676
CfoI GCGC 1 cut(s) 226
Cfr10I RCCGGY 1 cut(s) 561
Cfr13I GGNCC 2 cut(s) 407, 559
Csp6I GTAC 2 cut(s) 734, 739
CviAII CATG 1 cut(s) 179
CviQI GTAC 2 cut(s) 734, 739
DdeI CTNAG 2 cut(s) 41, 491
DpnI GATC 1 cut(s) 269
DpnII GATC 1 cut(s) 267
EaeI YGGCCR 1 cut(s) 550
Eco130I CCWWGG 1 cut(s) 729
Eco47I GGWCC 2 cut(s) 407, 559
Eco57I CTGAAG 2 cut(s) 212, 226
Eco81I CCTNAGG 1 cut(s) 491
EcoRI GAATTC 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 664
EcoT14I CCWWGG 1 cut(s) 729
ErhI CCWWGG 1 cut(s) 729
FaeI CATG 1 cut(s) 182
FaiI YATR 9 cut(s) 180, 187, 198, 324, 367, 531, 632, 677, 748
FalI AAGNNNNNCTT 2 cut(s) 341, 373
FatI CATG 1 cut(s) 178
Fnu4HI GCNGC 1 cut(s) 314
FokI GGATG 3 cut(s) 101, 382, 598
Fsp4HI GCNGC 1 cut(s) 314
FspBI CTAG 3 cut(s) 128, 462, 507
GlaI GCGC 1 cut(s) 225
GluI GCNGC 1 cut(s) 314
GsaI CCCAGC 1 cut(s) 480
GsuI CTGGAG 1 cut(s) 779
HaeII RGCGCY 1 cut(s) 227
HaeIII GGCC 1 cut(s) 552
HapII CCGG 2 cut(s) 67, 562
HhaI GCGC 1 cut(s) 226
Hin1II CATG 1 cut(s) 182
Hin6I GCGC 1 cut(s) 224
HinP1I GCGC 1 cut(s) 224
HincII GTYRAC 1 cut(s) 454
HindII GTYRAC 1 cut(s) 454
HinfI GANTC 6 cut(s) 80, 149, 246, 253, 331, 450
HpaII CCGG 2 cut(s) 67, 562
HphI GGTGA 2 cut(s) 401, 781
Hpy166II GTNNAC 2 cut(s) 454, 559
Hpy188I TCNGA 3 cut(s) 58, 88, 245
Hpy188III TCNNGA 4 cut(s) 166, 250, 758, 786
Hpy8I GTNNAC 2 cut(s) 454, 559
HpyAV CCTTC 3 cut(s) 116, 371, 587
HpyCH4III ACNGT 2 cut(s) 706, 738
HpyCH4V TGCA 2 cut(s) 207, 716
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 141, 294, 694
HpyF3I CTNAG 2 cut(s) 41, 491
Hsp92II CATG 1 cut(s) 182
HspAI GCGC 1 cut(s) 224
Kzo9I GATC 1 cut(s) 267
LweI GCATC 1 cut(s) 574
MaeI CTAG 3 cut(s) 128, 462, 507
MaeIII GTNAC 1 cut(s) 485
MalI GATC 1 cut(s) 269
MboI GATC 1 cut(s) 267
MboII GAAGA 3 cut(s) 57, 232, 349
MflI RGATCY 1 cut(s) 267
MhlI GDGCHC 2 cut(s) 177, 690
MluCI AATT 6 cut(s) 106, 211, 260, 352, 435, 678
MlyI GAGTC 3 cut(s) 74, 247, 459
MnlI CCTC 8 cut(s) 94, 112, 212, 354, 486, 489, 756, 765
MroXI GAANNNNTTC 2 cut(s) 49, 356
MseI TTAA 1 cut(s) 264
MspI CCGG 2 cut(s) 67, 562
MspR9I CCNGG 2 cut(s) 68, 666
Mva1269I GAATGC 1 cut(s) 137
MvaI CCWGG 1 cut(s) 666
MwoI GCNNNNNNNGC 4 cut(s) 20, 141, 294, 694
NciI CCSGG 1 cut(s) 68
NdeII GATC 1 cut(s) 267
NlaIII CATG 1 cut(s) 182
NlaIV GGNNCC 2 cut(s) 296, 500
NmeAIII GCCGAG 2 cut(s) 87, 140
PcsI WCGNNNNNNNCGW 1 cut(s) 59
PctI GAATGC 1 cut(s) 137
PdmI GAANNNNTTC 2 cut(s) 49, 356
PfeI GAWTC 3 cut(s) 149, 246, 331
PkrI GCNGC 1 cut(s) 315
PleI GAGTC 3 cut(s) 74, 247, 458
PpsI GAGTC 3 cut(s) 74, 247, 458
PsiI TTATAA 1 cut(s) 324
Psp6I CCWGG 1 cut(s) 664
PspFI CCCAGC 1 cut(s) 476
PspGI CCWGG 1 cut(s) 664
PspN4I GGNNCC 2 cut(s) 296, 500
PspPI GGNCC 2 cut(s) 407, 559
PstI CTGCAG 1 cut(s) 209
PsuI RGATCY 1 cut(s) 267
RsaI GTAC 2 cut(s) 735, 740
RsaNI GTAC 2 cut(s) 734, 739
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 1 cut(s) 314
Sau3AI GATC 1 cut(s) 267
Sau96I GGNCC 2 cut(s) 407, 559
SchI GAGTC 3 cut(s) 74, 247, 459
ScrFI CCNGG 2 cut(s) 68, 666
SduI GDGCHC 2 cut(s) 177, 690
SetI ASST 7 cut(s) 303, 383, 478, 492, 530, 667, 785
SfaNI GCATC 1 cut(s) 574
SfcI CTRYAG 1 cut(s) 205
SinI GGWCC 2 cut(s) 407, 559
Sse9I AATT 6 cut(s) 106, 211, 260, 352, 435, 678
SsiI CCGC 2 cut(s) 192, 313
SspMI CTAG 3 cut(s) 128, 462, 507
StyD4I CCNGG 2 cut(s) 66, 664
StyI CCWWGG 1 cut(s) 729
TaaI ACNGT 2 cut(s) 706, 738
TaqI TCGA 3 cut(s) 104, 165, 251
TasI AATT 6 cut(s) 106, 211, 260, 352, 435, 678
TatI WGTACW 1 cut(s) 738
TauI GCSGC 1 cut(s) 316
TfiI GAWTC 3 cut(s) 149, 246, 331
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TscAI CASTG 2 cut(s) 236, 676
TspDTI ATGAA 3 cut(s) 108, 268, 589
TspRI CASTG 2 cut(s) 236, 676
VpaK11BI GGWCC 2 cut(s) 407, 559
XapI RAATTY 3 cut(s) 106, 260, 352
XmnI GAANNNNTTC 2 cut(s) 49, 356
XspI CTAG 3 cut(s) 128, 462, 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.