Prupe.1G282600_v2.0.a1

RING-type zinc-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0009871
Physical Location & Seq
Forward (+)
28520327 .. 28523690
3364 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G282600.1

Sequence Viewer

Length: 789 bp
ATGTGGGGTTTTGCTTCTAATGCCATCACAAGCATTGGACTTACAAGAAGCTCCTCAGAGCCAAGCCGGGTTTGTTTGGACTCCTCGGACGATGAAGTCTGCTCAAATTCAAGCCAAGAGGAGGGGTTAGAATGCCCTATATGCCTGGAATCTTTTAACATTGTCGAGAATGTGCCCCATGTCTTATGGTGTGGTCATACCCTGTGTAGAAATTGTGTCTTGGGGCTTCAATGGGCTCTCTTTAAATTCTCCTCTCAAAAGTTTAAGATCCCATTTTTCATTGCTTGCCCGTGGTGCCACTTGTTGTCTTTGCGGCTGGTTTATAAGGGGAATCTAAAGTTTCCACGCAAGAATTTCTTCCTTCTCTGGATGATTGAGAGCTTCAATGGTGAAAGGGTAAAGTTTGGTTCTGCACTCAGTCGGGAGAATCAACAAATTGGTTCTCCAAGAGCAAGTTTAGCTATTGGAAATCAAACTGGCAACGGTAACCTGAGGAGGACCCATTCTAGTTGCCCTTCGCTGTCGAGGTATAACCACGATGATAGAAGTAGTCGTGTCGAGCGGCATCATTTCTCCCTGCAGAAGTCTTTGGAAAGTTTCATTCACATTACATCCAAGTTCCCATTAGTCGTAGTGTTTCTTTTGATTGTCTTTTTTGCAATACCTGGCTGTGCTATTATTTTGGCTCTCTACTTGTTACTCACAGTGGTTTTCGCAATCCCCTCTTTCTTCCTGTTGTACTTTTCATACCCTATTTTGGAGAGGTTGGTGAGGGAGATAACCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_UBOX

Protein Analysis

263

Amino Acids

29.75

Weight (kDa)

8.79

Isoelectric Point (pI)

53.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 324
AasI GACNNNNNNGTC 1 cut(s) 95
AccB1I GGYRCC 1 cut(s) 294
AccBSI CCGCTC 1 cut(s) 562
AciI CCGC 2 cut(s) 313, 562
AclWI GGATC 1 cut(s) 262
AcsI RAATTY 3 cut(s) 106, 245, 352
AfaI GTAC 1 cut(s) 740
AfiI CCNNNNNNNGG 2 cut(s) 121, 757
AgsI TTSAA 3 cut(s) 111, 230, 385
AjnI CCWGG 2 cut(s) 144, 664
AluBI AGCT 3 cut(s) 51, 381, 461
AluI AGCT 3 cut(s) 51, 381, 461
AlwI GGATC 1 cut(s) 262
ApoI RAATTY 3 cut(s) 106, 245, 352
Asp700I GAANNNNTTC 1 cut(s) 356
AspS9I GGNCC 1 cut(s) 498
AsuC2I CCSGG 1 cut(s) 68
AsuHPI GGTGA 2 cut(s) 401, 781
AvaII GGWCC 1 cut(s) 498
AxyI CCTNAGG 1 cut(s) 491
BaeGI GKGCMC 1 cut(s) 177
BanI GGYRCC 1 cut(s) 294
BanII GRGCYC 1 cut(s) 238
BccI CCATC 1 cut(s) 32
BciT130I CCWGG 2 cut(s) 146, 666
BcnI CCSGG 1 cut(s) 68
BfaI CTAG 1 cut(s) 507
BfmI CTRYAG 1 cut(s) 578
BisI GCNGC 2 cut(s) 314, 563
BlsI GCNGC 2 cut(s) 315, 564
Bme1390I CCNGG 3 cut(s) 68, 146, 666
Bme18I GGWCC 1 cut(s) 498
BmgT120I GGNCC 1 cut(s) 498
BmiI GGNNCC 2 cut(s) 296, 500
BmrFI CCNGG 3 cut(s) 68, 146, 666
BmsI GCATC 1 cut(s) 574
BplI GAGNNNNNCTC 1 cut(s) 767
BpuMI CCSGG 1 cut(s) 68
BsaJI CCNNGG 2 cut(s) 84, 290
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 757
Bse1I ACTGG 1 cut(s) 481
Bse21I CCTNAGG 1 cut(s) 491
Bse3DI GCAATG 1 cut(s) 279
BseBI CCWGG 2 cut(s) 146, 666
BseDI CCNNGG 2 cut(s) 84, 290
BseGI GGATG 2 cut(s) 375, 611
BseLI CCNNNNNNNGG 2 cut(s) 121, 757
BseMI GCAATG 1 cut(s) 279
BseMII CTCAG 3 cut(s) 69, 430, 482
BseNI ACTGG 1 cut(s) 481
BseRI GAGGAG 5 cut(s) 43, 73, 134, 241, 508
BseSI GKGCMC 1 cut(s) 177
BsgI GTGCAG 1 cut(s) 396
BshNI GGYRCC 1 cut(s) 294
BsiSI CCGG 1 cut(s) 67
BslI CCNNNNNNNGG 2 cut(s) 121, 757
BsmI GAATGC 1 cut(s) 137
Bsp1286I GDGCHC 2 cut(s) 177, 238
Bsp143I GATC 1 cut(s) 267
BspACI CCGC 2 cut(s) 313, 562
BspCNI CTCAG 3 cut(s) 68, 429, 483
BspHI TCATGA 1 cut(s) 785
BspLI GGNNCC 2 cut(s) 296, 500
BspMAI CTGCAG 1 cut(s) 582
BspPI GGATC 1 cut(s) 262
BspT107I GGYRCC 1 cut(s) 294
BsrBI CCGCTC 1 cut(s) 562
BsrDI GCAATG 1 cut(s) 279
BsrI ACTGG 1 cut(s) 481
BssECI CCNNGG 2 cut(s) 84, 290
BssMI GATC 1 cut(s) 267
Bst2UI CCWGG 2 cut(s) 146, 666
Bst4CI ACNGT 2 cut(s) 485, 706
BstC8I GCNNGC 1 cut(s) 286
BstDEI CTNAG 3 cut(s) 55, 416, 491
BstDSI CCRYGG 1 cut(s) 290
BstEII GGTNACC 1 cut(s) 485
BstF5I GGATG 2 cut(s) 375, 611
BstKTI GATC 1 cut(s) 270
BstMBI GATC 1 cut(s) 267
BstMWI GCNNNNNNNGC 4 cut(s) 20, 141, 294, 458
BstNI CCWGG 2 cut(s) 146, 666
BstPI GGTNACC 1 cut(s) 485
BstSCI CCNGG 3 cut(s) 66, 144, 664
BstSFI CTRYAG 1 cut(s) 578
BstSLI GKGCMC 1 cut(s) 177
BstX2I RGATCY 1 cut(s) 267
BstYI RGATCY 1 cut(s) 267
Bsu36I CCTNAGG 1 cut(s) 491
BtgI CCRYGG 1 cut(s) 290
BtsCI GGATG 2 cut(s) 375, 611
BtsIMutI CAGTG 1 cut(s) 711
Cac8I GCNNGC 1 cut(s) 286
CciI TCATGA 1 cut(s) 785
Cfr13I GGNCC 1 cut(s) 498
Csp6I GTAC 1 cut(s) 739
CviAII CATG 2 cut(s) 179, 786
CviQI GTAC 1 cut(s) 739
DdeI CTNAG 3 cut(s) 55, 416, 491
DpnI GATC 1 cut(s) 269
DpnII GATC 1 cut(s) 267
DraI TTTAAA 1 cut(s) 244
DrdI GACNNNNNNGTC 1 cut(s) 95
DseDI GACNNNNNNGTC 1 cut(s) 95
Eco24I GRGCYC 1 cut(s) 238
Eco47I GGWCC 1 cut(s) 498
Eco81I CCTNAGG 1 cut(s) 491
Eco91I GGTNACC 1 cut(s) 485
EcoO109I RGGNCCY 1 cut(s) 498
EcoO65I GGTNACC 1 cut(s) 485
EcoRII CCWGG 2 cut(s) 144, 664
EcoT38I GRGCYC 1 cut(s) 238
FaeI CATG 2 cut(s) 182, 789
FaiI YATR 9 cut(s) 140, 142, 180, 187, 198, 324, 531, 748, 787
FalI AAGNNNNNCTT 2 cut(s) 341, 373
FatI CATG 2 cut(s) 178, 785
Fnu4HI GCNGC 2 cut(s) 314, 563
FokI GGATG 2 cut(s) 382, 598
FriOI GRGCYC 1 cut(s) 238
Fsp4HI GCNGC 2 cut(s) 314, 563
FspBI CTAG 1 cut(s) 507
GluI GCNGC 2 cut(s) 314, 563
HapII CCGG 1 cut(s) 67
Hin1II CATG 2 cut(s) 182, 789
HinfI GANTC 4 cut(s) 80, 149, 331, 427
HpaII CCGG 1 cut(s) 67
HphI GGTGA 2 cut(s) 401, 781
Hpy188I TCNGA 2 cut(s) 58, 88
Hpy188III TCNNGA 4 cut(s) 166, 367, 422, 786
HpyAV CCTTC 2 cut(s) 371, 525
HpyCH4III ACNGT 2 cut(s) 485, 706
HpyCH4V TGCA 3 cut(s) 413, 580, 659
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 141, 294, 458
HpyF3I CTNAG 3 cut(s) 55, 416, 491
Hsp92II CATG 2 cut(s) 182, 789
Kzo9I GATC 1 cut(s) 267
LmnI GCTCC 1 cut(s) 56
LweI GCATC 1 cut(s) 574
MaeI CTAG 1 cut(s) 507
MaeIII GTNAC 2 cut(s) 485, 696
MalI GATC 1 cut(s) 269
MbiI CCGCTC 1 cut(s) 562
MboI GATC 1 cut(s) 267
MboII GAAGA 2 cut(s) 349, 721
MflI RGATCY 1 cut(s) 267
MhlI GDGCHC 2 cut(s) 177, 238
MluCI AATT 5 cut(s) 106, 211, 245, 352, 435
MlyI GAGTC 1 cut(s) 74
MroXI GAANNNNTTC 1 cut(s) 356
MseI TTAA 3 cut(s) 156, 243, 264
MspI CCGG 1 cut(s) 67
MspR9I CCNGG 3 cut(s) 68, 146, 666
Mva1269I GAATGC 1 cut(s) 137
MvaI CCWGG 2 cut(s) 146, 666
MwoI GCNNNNNNNGC 4 cut(s) 20, 141, 294, 458
NciI CCSGG 1 cut(s) 68
NdeII GATC 1 cut(s) 267
NlaIII CATG 2 cut(s) 182, 789
NlaIV GGNNCC 2 cut(s) 296, 500
PagI TCATGA 1 cut(s) 785
PctI GAATGC 1 cut(s) 137
PdmI GAANNNNTTC 1 cut(s) 356
PfeI GAWTC 3 cut(s) 149, 331, 427
PkrI GCNGC 2 cut(s) 315, 564
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
PpuMI RGGWCCY 1 cut(s) 498
PsiI TTATAA 1 cut(s) 324
Psp5II RGGWCCY 1 cut(s) 498
Psp6I CCWGG 2 cut(s) 144, 664
PspEI GGTNACC 1 cut(s) 485
PspGI CCWGG 2 cut(s) 144, 664
PspN4I GGNNCC 2 cut(s) 296, 500
PspPI GGNCC 1 cut(s) 498
PspPPI RGGWCCY 1 cut(s) 498
PstI CTGCAG 1 cut(s) 582
PsuI RGATCY 1 cut(s) 267
RsaI GTAC 1 cut(s) 740
RsaNI GTAC 1 cut(s) 739
SaqAI TTAA 3 cut(s) 156, 243, 264
SatI GCNGC 2 cut(s) 314, 563
Sau3AI GATC 1 cut(s) 267
Sau96I GGNCC 1 cut(s) 498
SchI GAGTC 1 cut(s) 74
ScrFI CCNGG 3 cut(s) 68, 146, 666
SduI GDGCHC 2 cut(s) 177, 238
SetI ASST 8 cut(s) 53, 383, 463, 492, 530, 667, 767, 785
SfaNI GCATC 1 cut(s) 574
SfcI CTRYAG 1 cut(s) 578
SinI GGWCC 1 cut(s) 498
Sse9I AATT 5 cut(s) 106, 211, 245, 352, 435
SsiI CCGC 2 cut(s) 313, 562
SspMI CTAG 1 cut(s) 507
StyD4I CCNGG 3 cut(s) 66, 144, 664
TaaI ACNGT 2 cut(s) 485, 706
TaqI TCGA 3 cut(s) 165, 524, 558
TasI AATT 5 cut(s) 106, 211, 245, 352, 435
TatI WGTACW 1 cut(s) 738
TauI GCSGC 2 cut(s) 316, 565
TfiI GAWTC 3 cut(s) 149, 331, 427
Tru1I TTAA 3 cut(s) 156, 243, 264
Tru9I TTAA 3 cut(s) 156, 243, 264
TscAI CASTG 1 cut(s) 711
TspDTI ATGAA 4 cut(s) 108, 268, 589, 735
TspRI CASTG 1 cut(s) 711
VpaK11BI GGWCC 1 cut(s) 498
XapI RAATTY 3 cut(s) 106, 245, 352
XmnI GAANNNNTTC 1 cut(s) 356
XspI CTAG 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.