Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0009871

Physical Location & Seq

Genomic Coordinates Reverse (-)

4525040 .. 4527152

Gene Structure 2113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1064000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGTTTCTTGGCCGAATGCTGATGTGGGGTTTTGCTTCAAATGCCATCACAAGCATTGGACTAAAAAGAAGCTCATCAGAGCCAAGTCGGGTATGCTTGGACTCCTCGGATGATGAAGTCTGCTCGAATTCAAGCCGAGAGGAAGGGTTAGAATGCCCTATATGCCTGGAATCTTTCAACATTGTCGAGAATGTGCCCCATGTCTTATGGTGCGGCCATACCCTGTGCAGAAACTGTGTCTTGGGGCTTCAATGGGCCACTGTAAAGTTTTCCTCTCAAAAGTTTAAGATACCATTCTTCATTTCTTGCCCTTGGTGCTACCTGTTGTCTTTGCGGCTGATTTATAAGGGTAATCTAAAGTTTCCTCGCAAGAATTTCTTCCTTCTGTGGATGGTTGAGAGCTTTAATGGTGATAGGGTAAAGTTTGTTCCTGCAATCAGTGGGGAAAACCAACAAATTGGTTCTCCAAGAGCAAGTTTCGCTATAGGAAATCAAGCTGGCAATGGTAACCTGAGGAGGAACCATTCTAGTTGTCCTTCACTATCAAGGTATAACCGTGATGATAGAGGTGGCCGTGTGGAGCGGCATCTATTCTCCCTGCACAAGTCTTTGGATTGCTTCATTCACATTACATCCAAGTTCCCATTAGTCATATTGTTTCTCGTGATTGCATTTTTTGCAATACCTGGCAGTGCTATAGTTTTGGCAATCTACTTGTTACTCACAGTGGTTTTTGCAATCCCATCGTTCTTGTTATTGTACTTTGCATACCCTATTTTGGAGAGGCTGGTAAAGGAGATAACCTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_UBOX

Protein Analysis

270

Amino Acids

30.42

Weight (kDa)

9.1

Isoelectric Point (pI)

47.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_UBOX	PF13445	52 - 97	5.6e-10	RING-type zinc-finger
RING_XB3-XBAT31	PF24921	52 - 106	4.1e-06	E3 ubiquitin-protein ligase XB3/XBAT31 RING finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69330
fragaria_vesca	FvH4_4g30433 FvH4_4g30433
malus_domestica	MD13G1065500.v1.1 MD16G1064000.v1.1
prunus_persica	Prupe.1G282600_v2.0.a1 Prupe.1G282600_v2.0.a1 Prupe.1G282600_v2.0.a1
pyrus_communis	pycom16g05610
rosa_chinensis	RchiOBHm_Chr4g0438761
rosa_laevigata	RLG00000006331
rosa_multiflora	Rmu_sc0002505.1_g000009
rosa_roxburghii	Rroxscaffold_5G00379790
rosa_rugosa	Rorug04G0313000 Rorug04G0313100
rosa_samantha	Rh4AG363700 Rh4BG375200 Rh4CG389300 Rh4DG369500
rosa_wichuraiana	Rw0G007220 Rw0G016770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	345
AccBSI	CCGCTC	1 cut(s)	583
AciI	CCGC	3 cut(s)	213, 334, 583
AcoI	YGGCCR	3 cut(s)	10, 214, 571
AcsI	RAATTY	2 cut(s)	127, 373
AfaI	GTAC	1 cut(s)	761
AfiI	CCNNNNNNNGG	1 cut(s)	778
AgsI	TTSAA	4 cut(s)	39, 132, 178, 251
AjnI	CCWGG	2 cut(s)	165, 685
AluBI	AGCT	3 cut(s)	72, 402, 497
AluI	AGCT	3 cut(s)	72, 402, 497
AlwNI	CAGNNNCTG	1 cut(s)	234
AoxI	GGCC	4 cut(s)	10, 214, 255, 571
ApoI	RAATTY	2 cut(s)	127, 373
Asp700I	GAANNNNTTC	1 cut(s)	377
AspS9I	GGNCC	1 cut(s)	255
AsuHPI	GGTGA	1 cut(s)	422
AxyI	CCTNAGG	1 cut(s)	512
BaeGI	GKGCMC	1 cut(s)	198
BauI	CACGAG	2 cut(s)	662, 805
BccI	CCATC	3 cut(s)	53, 385, 751
BceAI	ACGGC	1 cut(s)	558
BcgI	CGANNNNNNTGC	2 cut(s)	726, 760
BciT130I	CCWGG	2 cut(s)	167, 687
BfaI	CTAG	1 cut(s)	528
BfmI	CTRYAG	2 cut(s)	483, 696
BisI	GCNGC	3 cut(s)	214, 335, 584
BlsI	GCNGC	3 cut(s)	215, 336, 585
Bme1390I	CCNGG	2 cut(s)	167, 687
BmgT120I	GGNCC	1 cut(s)	255
BmiI	GGNNCC	1 cut(s)	521
BmrFI	CCNGG	2 cut(s)	167, 687
BmsI	GCATC	1 cut(s)	595
BplI	GAGNNNNNCTC	1 cut(s)	788
BsaJI	CCNNGG	2 cut(s)	105, 311
Bsc4I	CCNNNNNNNGG	1 cut(s)	778
Bse21I	CCTNAGG	1 cut(s)	512
Bse3DI	GCAATG	1 cut(s)	508
BseBI	CCWGG	2 cut(s)	167, 687
BseDI	CCNNGG	2 cut(s)	105, 311
BseGI	GGATG	3 cut(s)	115, 396, 632
BseLI	CCNNNNNNNGG	1 cut(s)	778
BseMI	GCAATG	1 cut(s)	508
BseMII	CTCAG	1 cut(s)	503
BseRI	GAGGAG	2 cut(s)	94, 529
BseSI	GKGCMC	1 cut(s)	198
BsgI	GTGCAG	2 cut(s)	247, 584
BshFI	GGCC	4 cut(s)	12, 216, 257, 573
BslI	CCNNNNNNNGG	1 cut(s)	778
BsmI	GAATGC	2 cut(s)	21, 158
BsnI	GGCC	4 cut(s)	12, 216, 257, 573
Bsp1286I	GDGCHC	1 cut(s)	198
BspACI	CCGC	3 cut(s)	213, 334, 583
BspANI	GGCC	4 cut(s)	12, 216, 257, 573
BspCNI	CTCAG	1 cut(s)	504
BspLI	GGNNCC	1 cut(s)	521
BsrBI	CCGCTC	1 cut(s)	583
BsrDI	GCAATG	1 cut(s)	508
BssECI	CCNNGG	2 cut(s)	105, 311
BssSI	CACGAG	2 cut(s)	662, 805
BssT1I	CCWWGG	1 cut(s)	311
Bst2BI	CACGAG	2 cut(s)	662, 805
Bst2UI	CCWGG	2 cut(s)	167, 687
Bst4CI	ACNGT	4 cut(s)	236, 262, 557, 727
BstAPI	GCANNNNNTGC	1 cut(s)	677
BstC8I	GCNNGC	1 cut(s)	499
BstDEI	CTNAG	1 cut(s)	512
BstEII	GGTNACC	1 cut(s)	506
BstF5I	GGATG	3 cut(s)	115, 396, 632
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 162, 315, 479, 677
BstNI	CCWGG	2 cut(s)	167, 687
BstPI	GGTNACC	1 cut(s)	506
BstSCI	CCNGG	2 cut(s)	165, 685
BstSFI	CTRYAG	2 cut(s)	483, 696
BstSLI	GKGCMC	1 cut(s)	198
BstXI	CCANNNNNNTGG	1 cut(s)	458
Bsu36I	CCTNAGG	1 cut(s)	512
BsuRI	GGCC	4 cut(s)	12, 216, 257, 573
BtsCI	GGATG	3 cut(s)	115, 396, 632
BtsI	GCAGTG	1 cut(s)	697
BtsIMutI	CAGTG	4 cut(s)	258, 445, 697, 732
Cac8I	GCNNGC	1 cut(s)	499
CaiI	CAGNNNCTG	1 cut(s)	234
Cfr13I	GGNCC	1 cut(s)	255
Csp6I	GTAC	1 cut(s)	760
CviAII	CATG	1 cut(s)	200
CviQI	GTAC	1 cut(s)	760
DdeI	CTNAG	1 cut(s)	512
EaeI	YGGCCR	3 cut(s)	10, 214, 571
Eco130I	CCWWGG	1 cut(s)	311
Eco81I	CCTNAGG	1 cut(s)	512
Eco91I	GGTNACC	1 cut(s)	506
EcoO65I	GGTNACC	1 cut(s)	506
EcoRI	GAATTC	1 cut(s)	127
EcoRII	CCWGG	2 cut(s)	165, 685
EcoT14I	CCWWGG	1 cut(s)	311
ErhI	CCWWGG	1 cut(s)	311
FaeI	CATG	1 cut(s)	203
FalI	AAGNNNNNCTT	2 cut(s)	362, 394
FatI	CATG	1 cut(s)	199
Fnu4HI	GCNGC	3 cut(s)	214, 335, 584
FokI	GGATG	3 cut(s)	122, 403, 619
Fsp4HI	GCNGC	3 cut(s)	214, 335, 584
FspBI	CTAG	1 cut(s)	528
GluI	GCNGC	3 cut(s)	214, 335, 584
HaeIII	GGCC	4 cut(s)	12, 216, 257, 573
Hin1II	CATG	1 cut(s)	203
HinfI	GANTC	2 cut(s)	101, 170
HphI	GGTGA	1 cut(s)	422
Hpy188I	TCNGA	2 cut(s)	79, 109
Hpy188III	TCNNGA	3 cut(s)	187, 664, 807
HpyAV	CCTTC	3 cut(s)	137, 392, 546
HpyCH4III	ACNGT	4 cut(s)	236, 262, 557, 727
HpyCH4V	TGCA	7 cut(s)	228, 434, 601, 671, 680, 737, 767
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 162, 315, 479, 677
HpyF3I	CTNAG	1 cut(s)	512
Hsp92II	CATG	1 cut(s)	203
LmnI	GCTCC	1 cut(s)	580
LweI	GCATC	1 cut(s)	595
MaeI	CTAG	1 cut(s)	528
MaeIII	GTNAC	2 cut(s)	506, 717
MbiI	CCGCTC	1 cut(s)	583
MboII	GAAGA	2 cut(s)	289, 370
MhlI	GDGCHC	1 cut(s)	198
MluCI	AATT	3 cut(s)	127, 373, 456
MlyI	GAGTC	1 cut(s)	95
MnlI	CCTC	8 cut(s)	115, 133, 283, 375, 507, 510, 560, 777
MroXI	GAANNNNTTC	1 cut(s)	377
MseI	TTAA	2 cut(s)	285, 405
MspR9I	CCNGG	2 cut(s)	167, 687
Mva1269I	GAATGC	2 cut(s)	21, 158
MvaI	CCWGG	2 cut(s)	167, 687
MwoI	GCNNNNNNNGC	5 cut(s)	41, 162, 315, 479, 677
NlaIII	CATG	1 cut(s)	203
NlaIV	GGNNCC	1 cut(s)	521
NmeAIII	GCCGAG	1 cut(s)	161
PctI	GAATGC	2 cut(s)	21, 158
PdmI	GAANNNNTTC	1 cut(s)	377
PfeI	GAWTC	1 cut(s)	170
PkrI	GCNGC	3 cut(s)	215, 336, 585
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
PsiI	TTATAA	1 cut(s)	345
Psp6I	CCWGG	2 cut(s)	165, 685
PspEI	GGTNACC	1 cut(s)	506
PspGI	CCWGG	2 cut(s)	165, 685
PspN4I	GGNNCC	1 cut(s)	521
PspPI	GGNCC	1 cut(s)	255
PsrI	GAACNNNNNNTAC	2 cut(s)	411, 443
PstNI	CAGNNNCTG	1 cut(s)	234
RsaI	GTAC	1 cut(s)	761
RsaNI	GTAC	1 cut(s)	760
SaqAI	TTAA	2 cut(s)	285, 405
SatI	GCNGC	3 cut(s)	214, 335, 584
Sau96I	GGNCC	1 cut(s)	255
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	2 cut(s)	167, 687
SduI	GDGCHC	1 cut(s)	198
SetI	ASST	9 cut(s)	74, 324, 404, 499, 513, 551, 571, 688, 806
SfaNI	GCATC	1 cut(s)	595
SfcI	CTRYAG	2 cut(s)	483, 696
Sse9I	AATT	3 cut(s)	127, 373, 456
SsiI	CCGC	3 cut(s)	213, 334, 583
SspMI	CTAG	1 cut(s)	528
StyD4I	CCNGG	2 cut(s)	165, 685
StyI	CCWWGG	1 cut(s)	311
TaaI	ACNGT	4 cut(s)	236, 262, 557, 727
TaqI	TCGA	2 cut(s)	125, 186
TasI	AATT	3 cut(s)	127, 373, 456
TatI	WGTACW	1 cut(s)	759
TauI	GCSGC	3 cut(s)	216, 337, 586
TfiI	GAWTC	1 cut(s)	170
Tru1I	TTAA	2 cut(s)	285, 405
Tru9I	TTAA	2 cut(s)	285, 405
TscAI	CASTG	4 cut(s)	265, 445, 697, 732
TspDTI	ATGAA	3 cut(s)	129, 289, 610
TspRI	CASTG	4 cut(s)	265, 445, 697, 732
XapI	RAATTY	2 cut(s)	127, 373
XmnI	GAANNNNTTC	1 cut(s)	377
XspI	CTAG	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.