FvH4_4g30433

RING-type zinc-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0009871
Physical Location & Seq
Reverse (-)
30063181 .. 30066437
3257 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g30433.t1

Sequence Viewer

Length: 789 bp
ATGTGGGGCTTTGCTTCTAATGCTATTACGAGCATTGGACTTAGGAGAAGTTCGTCAGAGCCGAGCAGGGTGTTCTTGGACTCCTCGGATGATGAGGTTTGCTCGAATTCAAGCCGAGAGGAAGGGCTAGAATGCCCTATTTGTTTGGAATCTTTTAACATTGTCGAGAATGTTCCCCATGTGTTATGGTGCGGTCATACCCTGTGCAGAAATTGTGTCCTGGCGCTTCAGTGGGCGGTCTTCAGATTCTCGACTCAAAAATTTAAGATCCCGTTTTTCATTTCTTGTCCGTGGTGCCACCTGTTTTCTTTGCGGCTGGTTTATAAGGGGAATCTAAAGTTTCCTCGCAAGAATTTCTTCCTTTTGTGGATGGTTGAGAGCTTCAATGGTGATAGGGCGAAGTTTGGTCCTGCTTCCAATGGGGAAAATCAACAAATTAGTTCTCCAAGAGTCAACTTGGCTACTGGAAATCATGCTGGCAATAGTAACCTGAGGAGGAACCATTTTAGTTGTCCTTTGCTGTCAAGGTATAATAGTGTTGATGGTGGTGGCCGTGTGGACCGGCATCATTTCTCCCTTCACAAGTCTTTGGATTGCTTCATTCACATTACATCCAAGTTCCCATTAGTTATACTGCTTCTGTTGATTGTCTTTTGCGTAATACCGGGCAGTGCTATAATCTTGGTACTCTACTTGCTACTCACAGTTCTTTTTGCAATCCCATCTGTCTTGGTATTGTACTTTGCATATCCTACTTTGGAGAGGCTGGTAAGGGAGATAACCTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_UBOX

Protein Analysis

263

Amino Acids

29.66

Weight (kDa)

8.92

Isoelectric Point (pI)

46.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_UBOX PF13445 45 - 89 5.6e-09 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 324
AccB1I GGYRCC 1 cut(s) 294
AciI CCGC 3 cut(s) 192, 236, 313
AclWI GGATC 1 cut(s) 262
AcoI YGGCCR 1 cut(s) 550
AcsI RAATTY 3 cut(s) 106, 260, 352
AcuI CTGAAG 2 cut(s) 212, 226
AfaI GTAC 2 cut(s) 687, 740
AgsI TTSAA 2 cut(s) 111, 385
AjnI CCWGG 1 cut(s) 219
AluBI AGCT 1 cut(s) 381
AluI AGCT 1 cut(s) 381
AlwI GGATC 1 cut(s) 262
AoxI GGCC 1 cut(s) 550
ApoI RAATTY 3 cut(s) 106, 260, 352
Asp700I GAANNNNTTC 1 cut(s) 356
AspLEI GCGC 1 cut(s) 226
AspS9I GGNCC 2 cut(s) 407, 559
AsuC2I CCSGG 1 cut(s) 666
AsuHPI GGTGA 1 cut(s) 401
AvaII GGWCC 2 cut(s) 407, 559
AxyI CCTNAGG 1 cut(s) 491
BanI GGYRCC 1 cut(s) 294
BauI CACGAG 1 cut(s) 784
BbsI GAAGAC 1 cut(s) 232
BccI CCATC 3 cut(s) 364, 536, 730
BceAI ACGGC 1 cut(s) 537
BciT130I CCWGG 1 cut(s) 221
BcnI CCSGG 1 cut(s) 666
BfaI CTAG 1 cut(s) 128
BfoI RGCGCY 1 cut(s) 227
BisI GCNGC 1 cut(s) 314
BlsI GCNGC 1 cut(s) 315
Bme1390I CCNGG 2 cut(s) 221, 666
Bme18I GGWCC 2 cut(s) 407, 559
BmgT120I GGNCC 2 cut(s) 407, 559
BmiI GGNNCC 2 cut(s) 296, 500
BmrFI CCNGG 2 cut(s) 221, 666
BmsI GCATC 1 cut(s) 574
BpiI GAAGAC 1 cut(s) 232
BplI GAGNNNNNCTC 3 cut(s) 86, 118, 767
BpuMI CCSGG 1 cut(s) 666
BsaJI CCNNGG 2 cut(s) 84, 290
Bse118I RCCGGY 1 cut(s) 561
Bse1I ACTGG 1 cut(s) 469
Bse21I CCTNAGG 1 cut(s) 491
BseBI CCWGG 1 cut(s) 221
BseDI CCNNGG 2 cut(s) 84, 290
BseGI GGATG 3 cut(s) 94, 375, 611
BseMII CTCAG 1 cut(s) 482
BseNI ACTGG 1 cut(s) 469
BseRI GAGGAG 2 cut(s) 73, 508
BsgI GTGCAG 1 cut(s) 226
BshFI GGCC 1 cut(s) 552
BshNI GGYRCC 1 cut(s) 294
BsiSI CCGG 2 cut(s) 562, 665
BsmI GAATGC 1 cut(s) 137
BsnI GGCC 1 cut(s) 552
Bsp143I GATC 1 cut(s) 267
BspACI CCGC 3 cut(s) 192, 236, 313
BspANI GGCC 1 cut(s) 552
BspCNI CTCAG 1 cut(s) 483
BspLI GGNNCC 2 cut(s) 296, 500
BspPI GGATC 1 cut(s) 262
BspT107I GGYRCC 1 cut(s) 294
BsrFI RCCGGY 1 cut(s) 561
BsrI ACTGG 1 cut(s) 469
BssAI RCCGGY 1 cut(s) 561
BssECI CCNNGG 2 cut(s) 84, 290
BssMI GATC 1 cut(s) 267
BssSI CACGAG 1 cut(s) 784
Bst2BI CACGAG 1 cut(s) 784
Bst2UI CCWGG 1 cut(s) 221
Bst4CI ACNGT 1 cut(s) 706
BstC8I GCNNGC 1 cut(s) 478
BstDEI CTNAG 2 cut(s) 41, 491
BstDSI CCRYGG 1 cut(s) 290
BstF5I GGATG 3 cut(s) 94, 375, 611
BstH2I RGCGCY 1 cut(s) 227
BstHHI GCGC 1 cut(s) 226
BstKTI GATC 1 cut(s) 270
BstMBI GATC 1 cut(s) 267
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstNI CCWGG 1 cut(s) 221
BstSCI CCNGG 2 cut(s) 219, 664
BstV2I GAAGAC 1 cut(s) 232
BstX2I RGATCY 1 cut(s) 267
BstYI RGATCY 1 cut(s) 267
Bsu36I CCTNAGG 1 cut(s) 491
BsuRI GGCC 1 cut(s) 552
BtgI CCRYGG 1 cut(s) 290
BtsCI GGATG 3 cut(s) 94, 375, 611
BtsI GCAGTG 1 cut(s) 676
BtsIMutI CAGTG 2 cut(s) 236, 676
Cac8I GCNNGC 1 cut(s) 478
CfoI GCGC 1 cut(s) 226
Cfr10I RCCGGY 1 cut(s) 561
Cfr13I GGNCC 2 cut(s) 407, 559
Csp6I GTAC 2 cut(s) 686, 739
CviAII CATG 2 cut(s) 179, 473
CviJI RGCY 9 cut(s) 9, 61, 114, 127, 316, 381, 461, 552, 766
CviKI_1 RGCY 9 cut(s) 9, 61, 114, 127, 316, 381, 461, 552, 766
CviQI GTAC 2 cut(s) 686, 739
DdeI CTNAG 2 cut(s) 41, 491
DpnI GATC 1 cut(s) 269
DpnII GATC 1 cut(s) 267
EaeI YGGCCR 1 cut(s) 550
Eco47I GGWCC 2 cut(s) 407, 559
Eco57I CTGAAG 2 cut(s) 212, 226
Eco81I CCTNAGG 1 cut(s) 491
EcoRI GAATTC 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 219
FaeI CATG 2 cut(s) 182, 476
FaiI YATR 9 cut(s) 180, 187, 198, 324, 474, 531, 632, 677, 748
FalI AAGNNNNNCTT 2 cut(s) 341, 373
FatI CATG 2 cut(s) 178, 472
Fnu4HI GCNGC 1 cut(s) 314
FokI GGATG 3 cut(s) 101, 382, 598
Fsp4HI GCNGC 1 cut(s) 314
FspBI CTAG 1 cut(s) 128
GlaI GCGC 1 cut(s) 225
GluI GCNGC 1 cut(s) 314
HaeII RGCGCY 1 cut(s) 227
HaeIII GGCC 1 cut(s) 552
HapII CCGG 2 cut(s) 562, 665
HhaI GCGC 1 cut(s) 226
Hin1II CATG 2 cut(s) 182, 476
Hin6I GCGC 1 cut(s) 224
HinP1I GCGC 1 cut(s) 224
HincII GTYRAC 1 cut(s) 454
HindII GTYRAC 1 cut(s) 454
HinfI GANTC 6 cut(s) 80, 149, 246, 253, 331, 450
HpaII CCGG 2 cut(s) 562, 665
HphI GGTGA 1 cut(s) 401
Hpy166II GTNNAC 2 cut(s) 454, 559
Hpy188I TCNGA 3 cut(s) 58, 88, 245
Hpy188III TCNNGA 3 cut(s) 166, 250, 786
Hpy8I GTNNAC 2 cut(s) 454, 559
HpyAV CCTTC 2 cut(s) 116, 587
HpyCH4III ACNGT 1 cut(s) 706
HpyCH4V TGCA 3 cut(s) 207, 716, 746
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpyF3I CTNAG 2 cut(s) 41, 491
Hsp92II CATG 2 cut(s) 182, 476
HspAI GCGC 1 cut(s) 224
Kzo9I GATC 1 cut(s) 267
LweI GCATC 1 cut(s) 574
MaeI CTAG 1 cut(s) 128
MaeIII GTNAC 1 cut(s) 485
MalI GATC 1 cut(s) 269
MboI GATC 1 cut(s) 267
MboII GAAGA 2 cut(s) 232, 349
MflI RGATCY 1 cut(s) 267
MluCI AATT 5 cut(s) 106, 211, 260, 352, 435
MlyI GAGTC 3 cut(s) 74, 247, 459
MnlI CCTC 7 cut(s) 88, 94, 112, 354, 486, 489, 756
MroXI GAANNNNTTC 1 cut(s) 356
MseI TTAA 2 cut(s) 156, 264
MspI CCGG 2 cut(s) 562, 665
MspR9I CCNGG 2 cut(s) 221, 666
Mva1269I GAATGC 1 cut(s) 137
MvaI CCWGG 1 cut(s) 221
MwoI GCNNNNNNNGC 1 cut(s) 20
NciI CCSGG 1 cut(s) 666
NdeII GATC 1 cut(s) 267
NlaIII CATG 2 cut(s) 182, 476
NlaIV GGNNCC 2 cut(s) 296, 500
NmeAIII GCCGAG 2 cut(s) 87, 140
PcsI WCGNNNNNNNCGW 1 cut(s) 59
PctI GAATGC 1 cut(s) 137
PdmI GAANNNNTTC 1 cut(s) 356
PfeI GAWTC 3 cut(s) 149, 246, 331
PkrI GCNGC 1 cut(s) 315
PleI GAGTC 3 cut(s) 74, 247, 458
PpsI GAGTC 3 cut(s) 74, 247, 458
PsiI TTATAA 1 cut(s) 324
Psp6I CCWGG 1 cut(s) 219
PspGI CCWGG 1 cut(s) 219
PspN4I GGNNCC 2 cut(s) 296, 500
PspPI GGNCC 2 cut(s) 407, 559
PsuI RGATCY 1 cut(s) 267
RsaI GTAC 2 cut(s) 687, 740
RsaNI GTAC 2 cut(s) 686, 739
SaqAI TTAA 2 cut(s) 156, 264
SatI GCNGC 1 cut(s) 314
Sau3AI GATC 1 cut(s) 267
Sau96I GGNCC 2 cut(s) 407, 559
SchI GAGTC 3 cut(s) 74, 247, 459
ScrFI CCNGG 2 cut(s) 221, 666
SetI ASST 6 cut(s) 99, 303, 383, 492, 530, 785
SfaNI GCATC 1 cut(s) 574
SinI GGWCC 2 cut(s) 407, 559
Sse9I AATT 5 cut(s) 106, 211, 260, 352, 435
SsiI CCGC 3 cut(s) 192, 236, 313
SspMI CTAG 1 cut(s) 128
StyD4I CCNGG 2 cut(s) 219, 664
TaaI ACNGT 1 cut(s) 706
TaqI TCGA 3 cut(s) 104, 165, 251
TasI AATT 5 cut(s) 106, 211, 260, 352, 435
TatI WGTACW 1 cut(s) 738
TauI GCSGC 1 cut(s) 316
TfiI GAWTC 3 cut(s) 149, 246, 331
Tru1I TTAA 2 cut(s) 156, 264
Tru9I TTAA 2 cut(s) 156, 264
TscAI CASTG 2 cut(s) 236, 676
TspDTI ATGAA 2 cut(s) 268, 589
TspGWI ACGGA 1 cut(s) 279
TspRI CASTG 2 cut(s) 236, 676
VpaK11BI GGWCC 2 cut(s) 407, 559
XapI RAATTY 3 cut(s) 106, 260, 352
XmnI GAANNNNTTC 1 cut(s) 356
XspI CTAG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.