Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0009871

Physical Location & Seq

Genomic Coordinates Reverse (-)

4542925 .. 4544758

Gene Structure 1834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1065500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGTGGGGTTTTGCTTCAAATGCTTTCACAAGCGTTGGACTAAAAAGAAGCTCATCAGAGCCGAGTCAGGTTTGCTTGGACTCCTCGGACGATGAAGTCTGCTCGAATTCAAGCCGAGAGGAAGGGTTAGAATGCCCTATATGCCTGGAATCTTTCAACATTGTCGAGAATGTGCCCCATGTCTTATGGTGCGGTCATACCCTGTGTAGAAACTGTGTCTTGGGGCTTCAATGGGCTCTCGTAAAATTATCCTCTCAAAAGTTTAAGATCCCATTTTTCATTTCTTGCCCTTGGTGCCACCAGTTGTCTTTGCGGCTGATTTATAAGGGTAATCTAAAGTTTCCTCGCAAGAATTTCTTCCTTCTGTGGATGGTTGAGAGCTTTAATGGTGATAGGTTAAAGTTTGTTCCTGCAATCAGTGGGGAAAATCAACTAATTGGTTCTCCAATAGCAAGTTTGGCTATTGGAAATCAAGCTGCCAACGGTAACCTGAGGAGGAACCATTCTAGTTGTCCTTCACTTTCAAGGCATAACCGTGATGATAGGGGTGGCCATGTGGAGCGGCATCAATTCTCCCTGCACAAGTCTTTGGATTGCTTCATTCACATTACTTCCAAGTTCCCATTAGTCATATTGTTTCTCGTGATTGCATTTTTCGCAATACCTGGCAGTGCTATTATTTTGGCAATCTACTTGTTACTCACAGTTGTTTTTGCAATTCCATCTTTCTTGTTGTTGTACTTTGCATACCCTATTTTGGATAGGCTGGTAAAGGAGATAAGCTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_UBOX

Protein Analysis

263

Amino Acids

29.42

Weight (kDa)

8.65

Isoelectric Point (pI)

51.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_UBOX	PF13445	45 - 91	2.4e-10	RING-type zinc-finger
RING_XB3-XBAT31	PF24921	45 - 100	4.5e-06	E3 ubiquitin-protein ligase XB3/XBAT31 RING finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69330
fragaria_vesca	FvH4_4g30433 FvH4_4g30433
malus_domestica	MD13G1065500.v1.1 MD16G1064000.v1.1
prunus_persica	Prupe.1G282600_v2.0.a1 Prupe.1G282600_v2.0.a1 Prupe.1G282600_v2.0.a1
pyrus_communis	pycom16g05610
rosa_chinensis	RchiOBHm_Chr4g0438761
rosa_laevigata	RLG00000006331
rosa_multiflora	Rmu_sc0002505.1_g000009
rosa_roxburghii	Rroxscaffold_5G00379790
rosa_rugosa	Rorug04G0313000 Rorug04G0313100
rosa_samantha	Rh4AG363700 Rh4BG375200 Rh4CG389300 Rh4DG369500
rosa_wichuraiana	Rw0G007220 Rw0G016770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	324
AasI	GACNNNNNNGTC	1 cut(s)	95
AccB1I	GGYRCC	1 cut(s)	294
AccBSI	CCGCTC	1 cut(s)	562
AciI	CCGC	3 cut(s)	192, 313, 562
AclWI	GGATC	1 cut(s)	262
AcoI	YGGCCR	1 cut(s)	550
AcsI	RAATTY	2 cut(s)	106, 352
AfaI	GTAC	1 cut(s)	740
AfiI	CCNNNNNNNGG	1 cut(s)	757
AgsI	TTSAA	5 cut(s)	18, 111, 157, 230, 525
AjnI	CCWGG	2 cut(s)	144, 664
AluBI	AGCT	4 cut(s)	51, 381, 476, 783
AluI	AGCT	4 cut(s)	51, 381, 476, 783
AlwI	GGATC	1 cut(s)	262
AoxI	GGCC	1 cut(s)	550
ApeKI	GCWGC	1 cut(s)	476
ApoI	RAATTY	2 cut(s)	106, 352
Asp700I	GAANNNNTTC	1 cut(s)	356
AsuHPI	GGTGA	1 cut(s)	401
AxyI	CCTNAGG	1 cut(s)	491
BaeGI	GKGCMC	1 cut(s)	177
BalI	TGGCCA	1 cut(s)	552
BanI	GGYRCC	1 cut(s)	294
BanII	GRGCYC	1 cut(s)	238
BauI	CACGAG	2 cut(s)	641, 784
BbvI	GCAGC	1 cut(s)	463
BccI	CCATC	2 cut(s)	364, 730
BciT130I	CCWGG	2 cut(s)	146, 666
BfaI	CTAG	1 cut(s)	507
BisI	GCNGC	3 cut(s)	314, 477, 563
BlsI	GCNGC	3 cut(s)	315, 478, 564
Bme1390I	CCNGG	2 cut(s)	146, 666
BmiI	GGNNCC	2 cut(s)	296, 500
BmrFI	CCNGG	2 cut(s)	146, 666
BmsI	GCATC	1 cut(s)	574
BplI	GAGNNNNNCTC	1 cut(s)	767
BsaJI	CCNNGG	2 cut(s)	84, 290
Bsc4I	CCNNNNNNNGG	1 cut(s)	757
Bse1I	ACTGG	1 cut(s)	301
Bse21I	CCTNAGG	1 cut(s)	491
BseBI	CCWGG	2 cut(s)	146, 666
BseDI	CCNNGG	2 cut(s)	84, 290
BseGI	GGATG	1 cut(s)	375
BseLI	CCNNNNNNNGG	1 cut(s)	757
BseMII	CTCAG	1 cut(s)	482
BseNI	ACTGG	1 cut(s)	301
BseRI	GAGGAG	2 cut(s)	73, 508
BseSI	GKGCMC	1 cut(s)	177
BseXI	GCAGC	1 cut(s)	463
BsgI	GTGCAG	1 cut(s)	563
BshFI	GGCC	1 cut(s)	552
BshNI	GGYRCC	1 cut(s)	294
BslI	CCNNNNNNNGG	1 cut(s)	757
BsmI	GAATGC	1 cut(s)	137
BsnI	GGCC	1 cut(s)	552
Bsp1286I	GDGCHC	2 cut(s)	177, 238
Bsp143I	GATC	1 cut(s)	267
BspACI	CCGC	3 cut(s)	192, 313, 562
BspANI	GGCC	1 cut(s)	552
BspCNI	CTCAG	1 cut(s)	483
BspLI	GGNNCC	2 cut(s)	296, 500
BspPI	GGATC	1 cut(s)	262
BspT107I	GGYRCC	1 cut(s)	294
BsrBI	CCGCTC	1 cut(s)	562
BsrI	ACTGG	1 cut(s)	301
BssECI	CCNNGG	2 cut(s)	84, 290
BssMI	GATC	1 cut(s)	267
BssSI	CACGAG	2 cut(s)	641, 784
BssT1I	CCWWGG	1 cut(s)	290
Bst2BI	CACGAG	2 cut(s)	641, 784
Bst2UI	CCWGG	2 cut(s)	146, 666
Bst4CI	ACNGT	4 cut(s)	215, 485, 536, 706
BstDEI	CTNAG	1 cut(s)	491
BstEII	GGTNACC	1 cut(s)	485
BstF5I	GGATG	1 cut(s)	375
BstKTI	GATC	1 cut(s)	270
BstMBI	GATC	1 cut(s)	267
BstMWI	GCNNNNNNNGC	5 cut(s)	20, 141, 294, 458, 656
BstNI	CCWGG	2 cut(s)	146, 666
BstPI	GGTNACC	1 cut(s)	485
BstSCI	CCNGG	2 cut(s)	144, 664
BstSLI	GKGCMC	1 cut(s)	177
BstV1I	GCAGC	1 cut(s)	463
BstX2I	RGATCY	1 cut(s)	267
BstYI	RGATCY	1 cut(s)	267
Bsu36I	CCTNAGG	1 cut(s)	491
BsuRI	GGCC	1 cut(s)	552
BtsCI	GGATG	1 cut(s)	375
BtsI	GCAGTG	1 cut(s)	676
BtsIMutI	CAGTG	2 cut(s)	424, 676
Csp6I	GTAC	1 cut(s)	739
CviAII	CATG	2 cut(s)	179, 554
CviQI	GTAC	1 cut(s)	739
DdeI	CTNAG	1 cut(s)	491
DpnI	GATC	1 cut(s)	269
DpnII	GATC	1 cut(s)	267
DrdI	GACNNNNNNGTC	1 cut(s)	95
DseDI	GACNNNNNNGTC	1 cut(s)	95
EaeI	YGGCCR	1 cut(s)	550
Eco130I	CCWWGG	1 cut(s)	290
Eco24I	GRGCYC	1 cut(s)	238
Eco81I	CCTNAGG	1 cut(s)	491
Eco91I	GGTNACC	1 cut(s)	485
EcoO65I	GGTNACC	1 cut(s)	485
EcoRI	GAATTC	1 cut(s)	106
EcoRII	CCWGG	2 cut(s)	144, 664
EcoT14I	CCWWGG	1 cut(s)	290
EcoT38I	GRGCYC	1 cut(s)	238
ErhI	CCWWGG	1 cut(s)	290
FaeI	CATG	2 cut(s)	182, 557
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FatI	CATG	2 cut(s)	178, 553
Fnu4HI	GCNGC	3 cut(s)	314, 477, 563
FokI	GGATG	1 cut(s)	382
FriOI	GRGCYC	1 cut(s)	238
Fsp4HI	GCNGC	3 cut(s)	314, 477, 563
FspBI	CTAG	1 cut(s)	507
GluI	GCNGC	3 cut(s)	314, 477, 563
HaeIII	GGCC	1 cut(s)	552
Hin1II	CATG	2 cut(s)	182, 557
HinfI	GANTC	3 cut(s)	64, 80, 149
HphI	GGTGA	1 cut(s)	401
Hpy188I	TCNGA	2 cut(s)	58, 88
Hpy188III	TCNNGA	3 cut(s)	166, 643, 786
HpyAV	CCTTC	3 cut(s)	116, 371, 525
HpyCH4III	ACNGT	4 cut(s)	215, 485, 536, 706
HpyCH4V	TGCA	5 cut(s)	413, 580, 650, 716, 746
HpyF10VI	GCNNNNNNNGC	5 cut(s)	20, 141, 294, 458, 656
HpyF3I	CTNAG	1 cut(s)	491
Hsp92II	CATG	2 cut(s)	182, 557
Kzo9I	GATC	1 cut(s)	267
LmnI	GCTCC	1 cut(s)	559
Lsp1109I	GCAGC	1 cut(s)	463
LweI	GCATC	1 cut(s)	574
MaeI	CTAG	1 cut(s)	507
MaeIII	GTNAC	2 cut(s)	485, 696
MalI	GATC	1 cut(s)	269
MbiI	CCGCTC	1 cut(s)	562
MboI	GATC	1 cut(s)	267
MboII	GAAGA	1 cut(s)	349
MflI	RGATCY	1 cut(s)	267
MhlI	GDGCHC	2 cut(s)	177, 238
MlsI	TGGCCA	1 cut(s)	552
MluCI	AATT	6 cut(s)	106, 245, 352, 435, 569, 717
MluNI	TGGCCA	1 cut(s)	552
MlyI	GAGTC	2 cut(s)	73, 74
MmeI	TCCRAC	1 cut(s)	16
MnlI	CCTC	6 cut(s)	94, 112, 262, 354, 486, 489
Mox20I	TGGCCA	1 cut(s)	552
MroXI	GAANNNNTTC	1 cut(s)	356
MscI	TGGCCA	1 cut(s)	552
MseI	TTAA	3 cut(s)	264, 384, 398
MslI	CAYNNNNRTG	1 cut(s)	534
Msp20I	TGGCCA	1 cut(s)	552
MspR9I	CCNGG	2 cut(s)	146, 666
Mva1269I	GAATGC	1 cut(s)	137
MvaI	CCWGG	2 cut(s)	146, 666
MwoI	GCNNNNNNNGC	5 cut(s)	20, 141, 294, 458, 656
NdeII	GATC	1 cut(s)	267
NlaIII	CATG	2 cut(s)	182, 557
NlaIV	GGNNCC	2 cut(s)	296, 500
NmeAIII	GCCGAG	2 cut(s)	87, 140
PctI	GAATGC	1 cut(s)	137
PdmI	GAANNNNTTC	1 cut(s)	356
PfeI	GAWTC	1 cut(s)	149
PkrI	GCNGC	3 cut(s)	315, 478, 564
PleI	GAGTC	2 cut(s)	72, 74
PpsI	GAGTC	2 cut(s)	72, 74
PsiI	TTATAA	1 cut(s)	324
Psp6I	CCWGG	2 cut(s)	144, 664
PspEI	GGTNACC	1 cut(s)	485
PspGI	CCWGG	2 cut(s)	144, 664
PspN4I	GGNNCC	2 cut(s)	296, 500
PsuI	RGATCY	1 cut(s)	267
RsaI	GTAC	1 cut(s)	740
RsaNI	GTAC	1 cut(s)	739
RseI	CAYNNNNRTG	1 cut(s)	534
SaqAI	TTAA	3 cut(s)	264, 384, 398
SatI	GCNGC	3 cut(s)	314, 477, 563
Sau3AI	GATC	1 cut(s)	267
SchI	GAGTC	2 cut(s)	73, 74
ScrFI	CCNGG	2 cut(s)	146, 666
SduI	GDGCHC	2 cut(s)	177, 238
SetI	ASST	8 cut(s)	53, 72, 383, 398, 478, 492, 667, 785
SfaNI	GCATC	1 cut(s)	574
SmiMI	CAYNNNNRTG	1 cut(s)	534
Sse9I	AATT	6 cut(s)	106, 245, 352, 435, 569, 717
SsiI	CCGC	3 cut(s)	192, 313, 562
SspMI	CTAG	1 cut(s)	507
StyD4I	CCNGG	2 cut(s)	144, 664
StyI	CCWWGG	1 cut(s)	290
TaaI	ACNGT	4 cut(s)	215, 485, 536, 706
TaqI	TCGA	2 cut(s)	104, 165
TasI	AATT	6 cut(s)	106, 245, 352, 435, 569, 717
TatI	WGTACW	1 cut(s)	738
TauI	GCSGC	2 cut(s)	316, 565
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	3 cut(s)	264, 384, 398
Tru9I	TTAA	3 cut(s)	264, 384, 398
TscAI	CASTG	2 cut(s)	424, 676
TseI	GCWGC	1 cut(s)	476
TspDTI	ATGAA	3 cut(s)	108, 268, 589
TspRI	CASTG	2 cut(s)	424, 676
XapI	RAATTY	2 cut(s)	106, 352
XmnI	GAANNNNTTC	1 cut(s)	356
XspI	CTAG	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.