Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002505.1

Orthogroup ID

OG0009871

Physical Location & Seq

Genomic Coordinates Reverse (-)

31748 .. 32539

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002505.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

atgtggggctttgcttctaatgccattacaagcattggacttagaagaagttcgtcagagccgagccgggtgttattggactcctcggatgatgaagtttgctcgaattcaagccgagaggaagggctagaatgccctatttgcttggaatctttcaacattgtcgagaatgtgccccatgtattatggtgcggtcataccctctgcagaaattgtgtcttggcgcttcagtgggctgtcttcagattctcgactcaaaaatttaagatcccatttttcatttcttgcccgtggtgccacctgttttctttgcggctggtttataaggggaatctaaagtttcctcgcaagaatttcttccttctatggatggttgagagtttcaatggtgatagggcgaagtttggtcctgccttgaatggggaaaatcaacaaattagttctccaagagtcaacttggctagtggaaatcaagctgggaatagtagtaacctgaggaggaaccattctagttgtcctttgctgtcaaggtataatggtgttgatgatggtggccgtgtggaccggcatcatttctcccttcacaagtctttggattgcttcattcacattacatccaagttcccattagttatagggcttctgttgattgtcttttgcgtaatacctggcagtgctataattttggtgctctacttgctactcacagttctttttgcaatcccatctgccttggtactgtacttcgcatatcctactctggagaggctggtgagggagataacctcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_UBOX

Protein Analysis

263

Amino Acids

29.6

Weight (kDa)

8.8

Isoelectric Point (pI)

46.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69330
fragaria_vesca	FvH4_4g30433 FvH4_4g30433
malus_domestica	MD13G1065500.v1.1 MD16G1064000.v1.1
prunus_persica	Prupe.1G282600_v2.0.a1 Prupe.1G282600_v2.0.a1 Prupe.1G282600_v2.0.a1
pyrus_communis	pycom16g05610
rosa_chinensis	RchiOBHm_Chr4g0438761
rosa_laevigata	RLG00000006331
rosa_multiflora	Rmu_sc0002505.1_g000009
rosa_roxburghii	Rroxscaffold_5G00379790
rosa_rugosa	Rorug04G0313000 Rorug04G0313100
rosa_samantha	Rh4AG363700 Rh4BG375200 Rh4CG389300 Rh4DG369500
rosa_wichuraiana	Rw0G007220 Rw0G016770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	324
AccB1I	GGYRCC	1 cut(s)	294
AciI	CCGC	2 cut(s)	192, 313
AclWI	GGATC	1 cut(s)	262
AcoI	YGGCCR	1 cut(s)	553
AcsI	RAATTY	3 cut(s)	106, 260, 352
AcuI	CTGAAG	2 cut(s)	212, 226
AfaI	GTAC	2 cut(s)	738, 743
AfiI	CCNNNNNNNGG	1 cut(s)	420
AgsI	TTSAA	4 cut(s)	111, 157, 385, 418
AjnI	CCWGG	1 cut(s)	667
AluBI	AGCT	1 cut(s)	476
AluI	AGCT	1 cut(s)	476
Alw21I	GWGCWC	1 cut(s)	693
AlwI	GGATC	1 cut(s)	262
AoxI	GGCC	1 cut(s)	553
ApoI	RAATTY	3 cut(s)	106, 260, 352
Asp700I	GAANNNNTTC	2 cut(s)	49, 356
AspLEI	GCGC	1 cut(s)	226
AspS9I	GGNCC	2 cut(s)	407, 562
AsuC2I	CCSGG	1 cut(s)	68
AsuHPI	GGTGA	2 cut(s)	401, 784
AvaII	GGWCC	2 cut(s)	407, 562
AxyI	CCTNAGG	1 cut(s)	494
BaeGI	GKGCMC	1 cut(s)	177
BanI	GGYRCC	1 cut(s)	294
BauI	CACGAG	1 cut(s)	787
BbsI	GAAGAC	1 cut(s)	232
Bbv12I	GWGCWC	1 cut(s)	693
BccI	CCATC	3 cut(s)	364, 542, 733
BceAI	ACGGC	1 cut(s)	540
BciT130I	CCWGG	1 cut(s)	669
BcnI	CCSGG	1 cut(s)	68
BfaI	CTAG	3 cut(s)	128, 462, 510
BfmI	CTRYAG	1 cut(s)	205
BfoI	RGCGCY	1 cut(s)	227
BisI	GCNGC	1 cut(s)	314
BlsI	GCNGC	1 cut(s)	315
Bme1390I	CCNGG	2 cut(s)	68, 669
Bme18I	GGWCC	2 cut(s)	407, 562
BmgT120I	GGNCC	2 cut(s)	407, 562
BmiI	GGNNCC	2 cut(s)	296, 503
BmrFI	CCNGG	2 cut(s)	68, 669
BmsI	GCATC	1 cut(s)	577
BpiI	GAAGAC	1 cut(s)	232
BplI	GAGNNNNNCTC	1 cut(s)	770
BpmI	CTGGAG	1 cut(s)	782
BpuMI	CCSGG	1 cut(s)	68
BsaJI	CCNNGG	3 cut(s)	84, 290, 732
Bsc4I	CCNNNNNNNGG	1 cut(s)	420
Bse118I	RCCGGY	1 cut(s)	564
Bse21I	CCTNAGG	1 cut(s)	494
BseBI	CCWGG	1 cut(s)	669
BseDI	CCNNGG	3 cut(s)	84, 290, 732
BseGI	GGATG	3 cut(s)	94, 375, 614
BseLI	CCNNNNNNNGG	1 cut(s)	420
BseMII	CTCAG	1 cut(s)	485
BseRI	GAGGAG	2 cut(s)	73, 511
BseSI	GKGCMC	1 cut(s)	177
BseYI	CCCAGC	1 cut(s)	476
BshFI	GGCC	1 cut(s)	555
BshNI	GGYRCC	1 cut(s)	294
BsiHKAI	GWGCWC	1 cut(s)	693
BsiSI	CCGG	2 cut(s)	67, 565
BslI	CCNNNNNNNGG	1 cut(s)	420
BsmI	GAATGC	1 cut(s)	137
BsnI	GGCC	1 cut(s)	555
Bsp1286I	GDGCHC	2 cut(s)	177, 693
Bsp143I	GATC	1 cut(s)	267
BspACI	CCGC	2 cut(s)	192, 313
BspANI	GGCC	1 cut(s)	555
BspCNI	CTCAG	1 cut(s)	486
BspLI	GGNNCC	2 cut(s)	296, 503
BspMAI	CTGCAG	1 cut(s)	209
BspPI	GGATC	1 cut(s)	262
BspT107I	GGYRCC	1 cut(s)	294
BsrFI	RCCGGY	1 cut(s)	564
BssAI	RCCGGY	1 cut(s)	564
BssECI	CCNNGG	3 cut(s)	84, 290, 732
BssMI	GATC	1 cut(s)	267
BssSI	CACGAG	1 cut(s)	787
BssT1I	CCWWGG	1 cut(s)	732
Bst2BI	CACGAG	1 cut(s)	787
Bst2UI	CCWGG	1 cut(s)	669
Bst4CI	ACNGT	2 cut(s)	709, 741
BstDEI	CTNAG	2 cut(s)	41, 494
BstDSI	CCRYGG	1 cut(s)	290
BstF5I	GGATG	3 cut(s)	94, 375, 614
BstH2I	RGCGCY	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	1 cut(s)	270
BstMBI	GATC	1 cut(s)	267
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 141, 294, 697
BstNI	CCWGG	1 cut(s)	669
BstSCI	CCNGG	2 cut(s)	66, 667
BstSFI	CTRYAG	1 cut(s)	205
BstSLI	GKGCMC	1 cut(s)	177
BstV2I	GAAGAC	1 cut(s)	232
BstX2I	RGATCY	1 cut(s)	267
BstYI	RGATCY	1 cut(s)	267
Bsu36I	CCTNAGG	1 cut(s)	494
BsuRI	GGCC	1 cut(s)	555
BtgI	CCRYGG	1 cut(s)	290
BtsCI	GGATG	3 cut(s)	94, 375, 614
BtsI	GCAGTG	1 cut(s)	679
BtsIMutI	CAGTG	2 cut(s)	236, 679
CfoI	GCGC	1 cut(s)	226
Cfr10I	RCCGGY	1 cut(s)	564
Cfr13I	GGNCC	2 cut(s)	407, 562
Csp6I	GTAC	2 cut(s)	737, 742
CviAII	CATG	1 cut(s)	179
CviQI	GTAC	2 cut(s)	737, 742
DdeI	CTNAG	2 cut(s)	41, 494
DpnI	GATC	1 cut(s)	269
DpnII	GATC	1 cut(s)	267
EaeI	YGGCCR	1 cut(s)	553
Eco130I	CCWWGG	1 cut(s)	732
Eco47I	GGWCC	2 cut(s)	407, 562
Eco57I	CTGAAG	2 cut(s)	212, 226
Eco81I	CCTNAGG	1 cut(s)	494
EcoRI	GAATTC	1 cut(s)	106
EcoRII	CCWGG	1 cut(s)	667
EcoT14I	CCWWGG	1 cut(s)	732
ErhI	CCWWGG	1 cut(s)	732
FaeI	CATG	1 cut(s)	182
FaiI	YATR	9 cut(s)	180, 187, 198, 324, 367, 534, 635, 680, 751
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FatI	CATG	1 cut(s)	178
Fnu4HI	GCNGC	1 cut(s)	314
FokI	GGATG	3 cut(s)	101, 382, 601
Fsp4HI	GCNGC	1 cut(s)	314
FspBI	CTAG	3 cut(s)	128, 462, 510
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	1 cut(s)	314
GsaI	CCCAGC	1 cut(s)	480
GsuI	CTGGAG	1 cut(s)	782
HaeII	RGCGCY	1 cut(s)	227
HaeIII	GGCC	1 cut(s)	555
HapII	CCGG	2 cut(s)	67, 565
HhaI	GCGC	1 cut(s)	226
Hin1II	CATG	1 cut(s)	182
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HinfI	GANTC	6 cut(s)	80, 149, 246, 253, 331, 450
HpaII	CCGG	2 cut(s)	67, 565
HphI	GGTGA	2 cut(s)	401, 784
Hpy166II	GTNNAC	2 cut(s)	454, 562
Hpy188I	TCNGA	3 cut(s)	58, 88, 245
Hpy188III	TCNNGA	4 cut(s)	166, 250, 761, 789
Hpy8I	GTNNAC	2 cut(s)	454, 562
HpyAV	CCTTC	3 cut(s)	116, 371, 590
HpyCH4III	ACNGT	2 cut(s)	709, 741
HpyCH4V	TGCA	2 cut(s)	207, 719
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 141, 294, 697
HpyF3I	CTNAG	2 cut(s)	41, 494
Hsp92II	CATG	1 cut(s)	182
HspAI	GCGC	1 cut(s)	224
Kzo9I	GATC	1 cut(s)	267
LweI	GCATC	1 cut(s)	577
MaeI	CTAG	3 cut(s)	128, 462, 510
MaeIII	GTNAC	1 cut(s)	488
MalI	GATC	1 cut(s)	269
MboI	GATC	1 cut(s)	267
MboII	GAAGA	3 cut(s)	57, 232, 349
MflI	RGATCY	1 cut(s)	267
MhlI	GDGCHC	2 cut(s)	177, 693
MluCI	AATT	6 cut(s)	106, 211, 260, 352, 435, 681
MlyI	GAGTC	3 cut(s)	74, 247, 459
MnlI	CCTC	8 cut(s)	94, 112, 212, 354, 489, 492, 759, 768
MroXI	GAANNNNTTC	2 cut(s)	49, 356
MseI	TTAA	1 cut(s)	264
MspI	CCGG	2 cut(s)	67, 565
MspR9I	CCNGG	2 cut(s)	68, 669
Mva1269I	GAATGC	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	669
MwoI	GCNNNNNNNGC	4 cut(s)	20, 141, 294, 697
NciI	CCSGG	1 cut(s)	68
NdeII	GATC	1 cut(s)	267
NlaIII	CATG	1 cut(s)	182
NlaIV	GGNNCC	2 cut(s)	296, 503
NmeAIII	GCCGAG	2 cut(s)	87, 140
PcsI	WCGNNNNNNNCGW	1 cut(s)	59
PctI	GAATGC	1 cut(s)	137
PdmI	GAANNNNTTC	2 cut(s)	49, 356
PfeI	GAWTC	3 cut(s)	149, 246, 331
PkrI	GCNGC	1 cut(s)	315
PleI	GAGTC	3 cut(s)	74, 247, 458
PpsI	GAGTC	3 cut(s)	74, 247, 458
PsiI	TTATAA	1 cut(s)	324
Psp6I	CCWGG	1 cut(s)	667
PspFI	CCCAGC	1 cut(s)	476
PspGI	CCWGG	1 cut(s)	667
PspN4I	GGNNCC	2 cut(s)	296, 503
PspPI	GGNCC	2 cut(s)	407, 562
PstI	CTGCAG	1 cut(s)	209
PsuI	RGATCY	1 cut(s)	267
RsaI	GTAC	2 cut(s)	738, 743
RsaNI	GTAC	2 cut(s)	737, 742
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	1 cut(s)	314
Sau3AI	GATC	1 cut(s)	267
Sau96I	GGNCC	2 cut(s)	407, 562
SchI	GAGTC	3 cut(s)	74, 247, 459
ScrFI	CCNGG	2 cut(s)	68, 669
SduI	GDGCHC	2 cut(s)	177, 693
SetI	ASST	6 cut(s)	303, 478, 495, 533, 670, 788
SfaNI	GCATC	1 cut(s)	577
SfcI	CTRYAG	1 cut(s)	205
SinI	GGWCC	2 cut(s)	407, 562
Sse9I	AATT	6 cut(s)	106, 211, 260, 352, 435, 681
SsiI	CCGC	2 cut(s)	192, 313
SspMI	CTAG	3 cut(s)	128, 462, 510
StyD4I	CCNGG	2 cut(s)	66, 667
StyI	CCWWGG	1 cut(s)	732
TaaI	ACNGT	2 cut(s)	709, 741
TaqI	TCGA	3 cut(s)	104, 165, 251
TasI	AATT	6 cut(s)	106, 211, 260, 352, 435, 681
TatI	WGTACW	1 cut(s)	741
TauI	GCSGC	1 cut(s)	316
TfiI	GAWTC	3 cut(s)	149, 246, 331
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	2 cut(s)	236, 679
TspDTI	ATGAA	3 cut(s)	108, 268, 592
TspRI	CASTG	2 cut(s)	236, 679
VpaK11BI	GGWCC	2 cut(s)	407, 562
XapI	RAATTY	3 cut(s)	106, 260, 352
XmnI	GAANNNNTTC	2 cut(s)	49, 356
XspI	CTAG	3 cut(s)	128, 462, 510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.