Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015353

Physical Location & Seq

Genomic Coordinates Reverse (-)

26877745 .. 26880064

Gene Structure 2320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G71310.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGCGGGGTTAGGGTTACGGCTAAAGGCGGCAAAATGGACGTTGAGGAGCGGATCAGGTGCTGTATCGAGAGAATGGTCGTCGGAGATGGGGAAAGGTGTTCGTCGATTCTCTACTGAAACAGAGAACGATGTTCCAACTTCAGGAATCAGTAGACCACTCGCTGAGATTCTCAAGGAGCTTAACAAAAAGGTTCCAGATTCAGTCATCCGAACTCGAGTTGAAGATGGGTGCTCCATCAAATACATCCCTTGGCACATTGTGAATCGGATCATGAATATGCATGCTCCAGAATGGTCAGGAGAAGTTCGAAGTGTCACTTACTCTCCTGATGGCAACACTGTTACTGTGGCTTATCGTGTGACTCTCTACGGCACTGATGCTGAGATATTTAGGGAATCAACAGGTACCACATCTGTAGATGACAAAGGCTATGGTGATGCTGTGCAAAAGGCGGAAGCAATGGCATTTCGCCGTGCGTGTGCAAGATTTGGATTAGGGCTTCATCTTTATCACGAGGATGCTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0033554 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0050897 GO:0051716 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rad52_Rad22

Protein Analysis

176

Amino Acids

19.48

Weight (kDa)

8.55

Isoelectric Point (pI)

42.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71310 AT1G71310 AT1G71310
fragaria_vesca	FvH4_2g00170
malus_domestica	MD05G1000800.v1.1
prunus_persica	Prupe.8G001500_v2.0.a1
pyrus_communis	pycom215g00020
rosa_chinensis	RchiOBHm_Chr6g0249441
rosa_laevigata	RLG00000015579
rosa_multiflora	Rmu_ssc0000459.1_g000022
rosa_roxburghii	Rroxscaffold_7G00217710
rosa_rugosa	Rorug05G0492500
rosa_samantha	Rh6AG002200 Rh6CG001400 Rh6DG001400
rosa_wichuraiana	Rw6G000280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	407
AccB1I	GGYRCC	1 cut(s)	407
AccBSI	CCGCTC	1 cut(s)	51
AccI	GTMKAC	1 cut(s)	154
AciI	CCGC	4 cut(s)	5, 29, 51, 455
AclWI	GGATC	2 cut(s)	61, 278
AcuI	CTGAAG	1 cut(s)	126
AdeI	CACNNNGTG	1 cut(s)	262
AfaI	GTAC	1 cut(s)	409
AfiI	CCNNNNNNNGG	1 cut(s)	143
AgsI	TTSAA	1 cut(s)	224
AluBI	AGCT	1 cut(s)	181
AluI	AGCT	1 cut(s)	181
Alw21I	GWGCWC	1 cut(s)	236
AlwI	GGATC	2 cut(s)	61, 278
AlwNI	CAGNNNCTG	1 cut(s)	62
Ama87I	CYCGRG	1 cut(s)	216
Asp718I	GGTACC	1 cut(s)	407
AsuHPI	GGTGA	1 cut(s)	449
AsuII	TTCGAA	1 cut(s)	310
AvaI	CYCGRG	1 cut(s)	216
BanI	GGYRCC	1 cut(s)	407
BauI	CACGAG	1 cut(s)	515
Bbv12I	GWGCWC	1 cut(s)	236
BccI	CCATC	4 cut(s)	82, 221, 245, 326
BceAI	ACGGC	3 cut(s)	35, 388, 459
BfmI	CTRYAG	1 cut(s)	417
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
BmeT110I	CYCGRG	1 cut(s)	216
BmiI	GGNNCC	2 cut(s)	195, 409
BmsI	GCATC	3 cut(s)	370, 430, 511
BpmI	CTGGAG	1 cut(s)	273
Bpu14I	TTCGAA	1 cut(s)	310
BpuEI	CTTGAG	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	251
BsaXI	ACNNNNNCTCC	2 cut(s)	310, 340
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
Bse3DI	GCAATG	1 cut(s)	468
BseDI	CCNNGG	1 cut(s)	251
BseGI	GGATG	3 cut(s)	207, 246, 526
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseMI	GCAATG	1 cut(s)	468
BseMII	CTCAG	2 cut(s)	156, 375
BseRI	GAGGAG	1 cut(s)	61
BshNI	GGYRCC	1 cut(s)	407
BsiHKAI	GWGCWC	1 cut(s)	236
BsiHKCI	CYCGRG	1 cut(s)	216
BslI	CCNNNNNNNGG	1 cut(s)	143
BsoBI	CYCGRG	1 cut(s)	216
Bsp119I	TTCGAA	1 cut(s)	310
Bsp1286I	GDGCHC	1 cut(s)	236
Bsp143I	GATC	2 cut(s)	53, 270
BspACI	CCGC	4 cut(s)	5, 29, 51, 455
BspCNI	CTCAG	2 cut(s)	157, 376
BspHI	TCATGA	1 cut(s)	273
BspLI	GGNNCC	2 cut(s)	195, 409
BspPI	GGATC	2 cut(s)	61, 278
BspT104I	TTCGAA	1 cut(s)	310
BspT107I	GGYRCC	1 cut(s)	407
BsrBI	CCGCTC	1 cut(s)	51
BsrDI	GCAATG	1 cut(s)	468
BssECI	CCNNGG	1 cut(s)	251
BssMI	GATC	2 cut(s)	53, 270
BssSI	CACGAG	1 cut(s)	515
BssT1I	CCWWGG	1 cut(s)	251
Bst2BI	CACGAG	1 cut(s)	515
Bst4CI	ACNGT	2 cut(s)	343, 349
BstBI	TTCGAA	1 cut(s)	310
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	2 cut(s)	165, 384
BstF5I	GGATG	3 cut(s)	207, 246, 526
BstKTI	GATC	2 cut(s)	56, 273
BstMBI	GATC	2 cut(s)	53, 270
BstNSI	RCATGY	1 cut(s)	287
BstSFI	CTRYAG	1 cut(s)	417
BtsCI	GGATG	3 cut(s)	207, 246, 526
BtsIMutI	CAGTG	2 cut(s)	339, 375
Cac8I	GCNNGC	1 cut(s)	285
CaiI	CAGNNNCTG	1 cut(s)	62
CciI	TCATGA	1 cut(s)	273
Csp6I	GTAC	1 cut(s)	408
CviAII	CATG	2 cut(s)	274, 284
CviJI	RGCY	5 cut(s)	22, 181, 353, 432, 502
CviKI_1	RGCY	5 cut(s)	22, 181, 353, 432, 502
CviQI	GTAC	1 cut(s)	408
DdeI	CTNAG	2 cut(s)	165, 384
DpnI	GATC	2 cut(s)	55, 272
DpnII	GATC	2 cut(s)	53, 270
DraIII	CACNNNGTG	1 cut(s)	262
EciI	GGCGGA	1 cut(s)	470
Eco130I	CCWWGG	1 cut(s)	251
Eco57I	CTGAAG	1 cut(s)	126
Eco88I	CYCGRG	1 cut(s)	216
EcoT14I	CCWWGG	1 cut(s)	251
EcoT22I	ATGCAT	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	251
FaeI	CATG	2 cut(s)	277, 287
FaiI	YATR	4 cut(s)	275, 281, 285, 435
FalI	AAGNNNNNCTT	2 cut(s)	304, 336
FatI	CATG	2 cut(s)	273, 283
FblI	GTMKAC	1 cut(s)	154
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	2 cut(s)	194, 233
Fsp4HI	GCNGC	1 cut(s)	30
GluI	GCNGC	1 cut(s)	30
GsuI	CTGGAG	1 cut(s)	273
Hin1II	CATG	2 cut(s)	277, 287
HinfI	GANTC	7 cut(s)	108, 147, 169, 200, 265, 364, 398
HphI	GGTGA	1 cut(s)	449
Hpy166II	GTNNAC	1 cut(s)	155
Hpy188I	TCNGA	3 cut(s)	85, 212, 270
Hpy188III	TCNNGA	8 cut(s)	69, 144, 197, 274, 290, 300, 329, 515
Hpy8I	GTNNAC	1 cut(s)	155
Hpy99I	CGWCG	2 cut(s)	85, 108
HpyCH4III	ACNGT	2 cut(s)	343, 349
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	3 cut(s)	283, 448, 485
HpyF3I	CTNAG	2 cut(s)	165, 384
HpySE526I	ACGT	1 cut(s)	41
Hsp92II	CATG	2 cut(s)	277, 287
KpnI	GGTACC	1 cut(s)	411
Kzo9I	GATC	2 cut(s)	53, 270
LmnI	GCTCC	4 cut(s)	48, 178, 239, 292
LpnPI	CCDG	7 cut(s)	42, 129, 210, 285, 303, 342, 390
LweI	GCATC	3 cut(s)	370, 430, 511
MaeII	ACGT	1 cut(s)	41
MaeIII	GTNAC	4 cut(s)	15, 316, 343, 361
MalI	GATC	2 cut(s)	55, 272
MbiI	CCGCTC	1 cut(s)	51
MboI	GATC	2 cut(s)	53, 270
MboII	GAAGA	1 cut(s)	236
MhlI	GDGCHC	1 cut(s)	236
MlyI	GAGTC	1 cut(s)	358
MmeI	TCCRAC	2 cut(s)	63, 161
MnlI	CCTC	2 cut(s)	39, 511
Mph1103I	ATGCAT	1 cut(s)	285
MseI	TTAA	1 cut(s)	183
MslI	CAYNNNNRTG	2 cut(s)	278, 519
NdeII	GATC	2 cut(s)	53, 270
NlaIII	CATG	2 cut(s)	277, 287
NlaIV	GGNNCC	2 cut(s)	195, 409
NmuCI	GTSAC	2 cut(s)	316, 361
NsiI	ATGCAT	1 cut(s)	285
NspI	RCATGY	1 cut(s)	287
NspV	TTCGAA	1 cut(s)	310
PaeI	GCATGC	1 cut(s)	287
PaeR7I	CTCGAG	1 cut(s)	216
PagI	TCATGA	1 cut(s)	273
PfeI	GAWTC	6 cut(s)	108, 147, 169, 200, 265, 398
PkrI	GCNGC	1 cut(s)	31
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
PspN4I	GGNNCC	2 cut(s)	195, 409
PspXI	VCTCGAGB	1 cut(s)	216
PstNI	CAGNNNCTG	1 cut(s)	62
RsaI	GTAC	1 cut(s)	409
RsaNI	GTAC	1 cut(s)	408
RseI	CAYNNNNRTG	2 cut(s)	278, 519
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	2 cut(s)	53, 270
SchI	GAGTC	1 cut(s)	358
SduI	GDGCHC	1 cut(s)	236
SetI	ASST	6 cut(s)	44, 61, 100, 183, 195, 409
SfaNI	GCATC	3 cut(s)	370, 430, 511
SfcI	CTRYAG	1 cut(s)	417
Sfr274I	CTCGAG	1 cut(s)	216
SfuI	TTCGAA	1 cut(s)	310
SlaI	CTCGAG	1 cut(s)	216
SmiMI	CAYNNNNRTG	2 cut(s)	278, 519
SmlI	CTYRAG	2 cut(s)	173, 216
SmoI	CTYRAG	2 cut(s)	173, 216
SphI	GCATGC	1 cut(s)	287
SsiI	CCGC	4 cut(s)	5, 29, 51, 455
StyI	CCWWGG	1 cut(s)	251
TaaI	ACNGT	2 cut(s)	343, 349
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	4 cut(s)	68, 106, 217, 310
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	6 cut(s)	108, 147, 169, 200, 265, 398
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TscAI	CASTG	2 cut(s)	346, 382
TseFI	GTSAC	2 cut(s)	316, 361
Tsp45I	GTSAC	2 cut(s)	316, 361
TspDTI	ATGAA	2 cut(s)	290, 494
TspRI	CASTG	2 cut(s)	346, 382
XceI	RCATGY	1 cut(s)	287
XhoI	CTCGAG	1 cut(s)	216
XmiI	GTMKAC	1 cut(s)	154
Zsp2I	ATGCAT	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.