Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000459.1

Orthogroup ID

OG0015353

Physical Location & Seq

Genomic Coordinates Forward (+)

137654 .. 140180

Gene Structure 2527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000459.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atgtttcctgtggacagggtcagtcgaggcagttctggccaggcggagcaatcgactgctccgatcacattgtttctaggtggagggtcgattgattcgtcagactggagagtcggaaagggttctgcggcttgggttttgtcaagtgaaatggcgcatccttgtagatcatgtttattgaggtcgctgcgtgtagctgctgcgtttcaaagttcagcgtggcgccgctcctatgccaagttggcctcttcgtcttgtgcgcaagggaggagggagaaacaggttgaagtggaagcagatgaagatgtagaagatttcgctgtgagctctggaatcagcagacccctctctgaaatcctcaagcaaatcaacaagaaagtccctgataccctcgtcaaatcccgccatgaaaatgggtttacatccaaatacatcccctggcacgttgttaatcgaattatgaacttgcatgctccagaatggtctggtgaggtccgaagcatcacatactctgctgatgccaagtctgtttctgttgtttatcgtgtcacgctctatggaactgatgctgagatttttagggagtctatagggactgcttcggtagatgacacaagttatggggatccagtacagaaggctgaagcaatggcatttcgtcgagcttgtgcgcgctttgggcttggtcttcatctttaccatgaagatttgtcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0033554 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0050897 GO:0051716 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rad52_Rad22

Protein Analysis

238

Amino Acids

26.17

Weight (kDa)

7.71

Isoelectric Point (pI)

53.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71310 AT1G71310 AT1G71310
fragaria_vesca	FvH4_2g00170
malus_domestica	MD05G1000800.v1.1
prunus_persica	Prupe.8G001500_v2.0.a1
pyrus_communis	pycom215g00020
rosa_chinensis	RchiOBHm_Chr6g0249441
rosa_laevigata	RLG00000015579
rosa_multiflora	Rmu_ssc0000459.1_g000022
rosa_roxburghii	Rroxscaffold_7G00217710
rosa_rugosa	Rorug05G0492500
rosa_samantha	Rh6AG002200 Rh6CG001400 Rh6DG001400
rosa_wichuraiana	Rw6G000280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	110
Acc16I	TGCGCA	1 cut(s)	261
AccB1I	GGYRCC	1 cut(s)	222
AccBSI	CCGCTC	1 cut(s)	228
AccII	CGCG	1 cut(s)	673
AciI	CCGC	4 cut(s)	44, 128, 226, 403
AclWI	GGATC	2 cut(s)	620, 633
AcoI	YGGCCR	1 cut(s)	37
AcuI	CTGAAG	1 cut(s)	663
AcyI	GRCGYC	1 cut(s)	223
AfaI	GTAC	1 cut(s)	633
AgsI	TTSAA	2 cut(s)	209, 287
AjnI	CCWGG	2 cut(s)	39, 437
AluBI	AGCT	3 cut(s)	197, 327, 665
AluI	AGCT	3 cut(s)	197, 327, 665
Alw21I	GWGCWC	1 cut(s)	329
AlwI	GGATC	2 cut(s)	620, 633
AoxI	GGCC	2 cut(s)	37, 243
ApeKI	GCWGC	3 cut(s)	187, 197, 200
Asp700I	GAANNNNTTC	1 cut(s)	121
AspLEI	GCGC	5 cut(s)	157, 225, 262, 673, 675
AspS9I	GGNCC	1 cut(s)	493
AsuHPI	GGTGA	1 cut(s)	500
AvaII	GGWCC	1 cut(s)	493
BaeI	ACNNNNGTAYC	2 cut(s)	378, 411
BalI	TGGCCA	1 cut(s)	39
BamHI	GGATCC	1 cut(s)	625
BanI	GGYRCC	1 cut(s)	222
BanII	GRGCYC	1 cut(s)	329
BbsI	GAAGAC	1 cut(s)	680
Bbv12I	GWGCWC	1 cut(s)	329
BbvI	GCAGC	3 cut(s)	174, 184, 187
BciT130I	CCWGG	2 cut(s)	41, 439
BfaI	CTAG	1 cut(s)	77
BfmI	CTRYAG	1 cut(s)	588
BfoI	RGCGCY	1 cut(s)	226
BglI	GCCNNNNNGGC	1 cut(s)	242
BisI	GCNGC	5 cut(s)	129, 188, 198, 201, 226
BlsI	GCNGC	5 cut(s)	130, 189, 199, 202, 227
Bme1390I	CCNGG	2 cut(s)	41, 439
Bme18I	GGWCC	1 cut(s)	493
BmgT120I	GGNCC	1 cut(s)	493
BmiI	GGNNCC	2 cut(s)	224, 627
BmrFI	CCNGG	2 cut(s)	41, 439
BmsI	GCATC	4 cut(s)	166, 508, 510, 556
BpiI	GAAGAC	1 cut(s)	680
BpmI	CTGGAG	2 cut(s)	127, 459
BpuEI	CTTGAG	1 cut(s)	344
BsaHI	GRCGYC	1 cut(s)	223
BsaJI	CCNNGG	1 cut(s)	437
Bse1I	ACTGG	2 cut(s)	110, 629
Bse3DI	GCAATG	1 cut(s)	654
BseBI	CCWGG	2 cut(s)	41, 439
BseDI	CCNNGG	1 cut(s)	437
BseGI	GGATG	3 cut(s)	157, 422, 432
BseMI	GCAATG	1 cut(s)	654
BseMII	CTCAG	1 cut(s)	561
BseNI	ACTGG	2 cut(s)	110, 629
BsePI	GCGCGC	1 cut(s)	671
BseRI	GAGGAG	1 cut(s)	283
BseXI	GCAGC	3 cut(s)	174, 184, 187
Bsh1236I	CGCG	1 cut(s)	673
BshFI	GGCC	2 cut(s)	39, 245
BshNI	GGYRCC	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	329
BslFI	GGGAC	2 cut(s)	365, 607
BsmFI	GGGAC	2 cut(s)	365, 607
BsnI	GGCC	2 cut(s)	39, 245
Bsp1286I	GDGCHC	1 cut(s)	329
Bsp143I	GATC	3 cut(s)	63, 167, 625
BspACI	CCGC	4 cut(s)	44, 128, 226, 403
BspANI	GGCC	2 cut(s)	39, 245
BspCNI	CTCAG	1 cut(s)	562
BspFNI	CGCG	1 cut(s)	673
BspLI	GGNNCC	2 cut(s)	224, 627
BspPI	GGATC	2 cut(s)	620, 633
BspT107I	GGYRCC	1 cut(s)	222
BsrBI	CCGCTC	1 cut(s)	228
BsrDI	GCAATG	1 cut(s)	654
BsrI	ACTGG	2 cut(s)	110, 629
BssECI	CCNNGG	1 cut(s)	437
BssHII	GCGCGC	1 cut(s)	671
BssMI	GATC	3 cut(s)	63, 167, 625
BssNI	GRCGYC	1 cut(s)	223
Bst2UI	CCWGG	2 cut(s)	41, 439
Bst6I	CTCTTC	1 cut(s)	253
BstACI	GRCGYC	1 cut(s)	223
BstC8I	GCNNGC	2 cut(s)	471, 673
BstDEI	CTNAG	2 cut(s)	570, 714
BstF5I	GGATG	3 cut(s)	157, 422, 432
BstFNI	CGCG	1 cut(s)	673
BstH2I	RGCGCY	1 cut(s)	226
BstHHI	GCGC	5 cut(s)	157, 225, 262, 673, 675
BstKTI	GATC	3 cut(s)	66, 170, 628
BstMBI	GATC	3 cut(s)	63, 167, 625
BstMWI	GCNNNNNNNGC	3 cut(s)	36, 242, 679
BstNI	CCWGG	2 cut(s)	41, 439
BstNSI	RCATGY	1 cut(s)	473
BstSCI	CCNGG	2 cut(s)	39, 437
BstSFI	CTRYAG	1 cut(s)	588
BstUI	CGCG	1 cut(s)	673
BstV1I	GCAGC	3 cut(s)	174, 184, 187
BstV2I	GAAGAC	1 cut(s)	680
BstX2I	RGATCY	1 cut(s)	625
BstXI	CCANNNNNNTGG	1 cut(s)	413
BstYI	RGATCY	1 cut(s)	625
BsuRI	GGCC	2 cut(s)	39, 245
BtsCI	GGATG	3 cut(s)	157, 422, 432
Cac8I	GCNNGC	2 cut(s)	471, 673
CfoI	GCGC	5 cut(s)	157, 225, 262, 673, 675
Cfr13I	GGNCC	1 cut(s)	493
Csp6I	GTAC	1 cut(s)	632
CviAII	CATG	4 cut(s)	171, 407, 470, 701
CviJI	RGCY	8 cut(s)	39, 131, 197, 245, 327, 641, 665, 682
CviKI_1	RGCY	8 cut(s)	39, 131, 197, 245, 327, 641, 665, 682
CviQI	GTAC	1 cut(s)	632
DdeI	CTNAG	2 cut(s)	570, 714
DinI	GGCGCC	1 cut(s)	224
DpnI	GATC	3 cut(s)	65, 169, 627
DpnII	GATC	3 cut(s)	63, 167, 625
DrdI	GACNNNNNNGTC	1 cut(s)	110
DseDI	GACNNNNNNGTC	1 cut(s)	110
EaeI	YGGCCR	1 cut(s)	37
Eam1104I	CTCTTC	1 cut(s)	253
EarI	CTCTTC	1 cut(s)	253
EciI	GGCGGA	1 cut(s)	59
Ecl136II	GAGCTC	1 cut(s)	327
Eco24I	GRGCYC	1 cut(s)	329
Eco47I	GGWCC	1 cut(s)	493
Eco53kI	GAGCTC	1 cut(s)	327
Eco57I	CTGAAG	1 cut(s)	663
EcoICRI	GAGCTC	1 cut(s)	327
EcoRII	CCWGG	2 cut(s)	39, 437
EcoT38I	GRGCYC	1 cut(s)	329
EgeI	GGCGCC	1 cut(s)	224
EheI	GGCGCC	1 cut(s)	224
FaeI	CATG	4 cut(s)	174, 410, 473, 704
FaqI	GGGAC	2 cut(s)	365, 607
FatI	CATG	4 cut(s)	170, 406, 469, 700
FauI	CCCGC	1 cut(s)	410
Fnu4HI	GCNGC	5 cut(s)	129, 188, 198, 201, 226
FokI	GGATG	3 cut(s)	144, 409, 419
FriOI	GRGCYC	1 cut(s)	329
Fsp4HI	GCNGC	5 cut(s)	129, 188, 198, 201, 226
FspBI	CTAG	1 cut(s)	77
FspI	TGCGCA	1 cut(s)	261
GlaI	GCGC	5 cut(s)	156, 224, 261, 672, 674
GluI	GCNGC	5 cut(s)	129, 188, 198, 201, 226
GsuI	CTGGAG	2 cut(s)	127, 459
HaeII	RGCGCY	1 cut(s)	226
HaeIII	GGCC	2 cut(s)	39, 245
HhaI	GCGC	5 cut(s)	157, 225, 262, 673, 675
Hin1I	GRCGYC	1 cut(s)	223
Hin1II	CATG	4 cut(s)	174, 410, 473, 704
Hin6I	GCGC	5 cut(s)	155, 223, 260, 671, 673
HinP1I	GCGC	5 cut(s)	155, 223, 260, 671, 673
HinfI	GANTC	4 cut(s)	95, 111, 333, 584
HphI	GGTGA	1 cut(s)	500
Hpy166II	GTNNAC	2 cut(s)	13, 420
Hpy188I	TCNGA	5 cut(s)	63, 103, 116, 352, 497
Hpy188III	TCNNGA	2 cut(s)	330, 476
Hpy8I	GTNNAC	2 cut(s)	13, 420
Hpy99I	CGWCG	1 cut(s)	663
HpyAV	CCTTC	1 cut(s)	631
HpyCH4IV	ACGT	1 cut(s)	444
HpyCH4V	TGCA	1 cut(s)	469
HpyF10VI	GCNNNNNNNGC	3 cut(s)	36, 242, 679
HpyF3I	CTNAG	2 cut(s)	570, 714
HpySE526I	ACGT	1 cut(s)	444
Hsp92I	GRCGYC	1 cut(s)	223
Hsp92II	CATG	4 cut(s)	174, 410, 473, 704
HspAI	GCGC	5 cut(s)	155, 223, 260, 671, 673
KasI	GGCGCC	1 cut(s)	222
Kzo9I	GATC	3 cut(s)	63, 167, 625
LmnI	GCTCC	4 cut(s)	46, 64, 233, 478
Lsp1109I	GCAGC	3 cut(s)	174, 184, 187
LweI	GCATC	4 cut(s)	166, 508, 510, 556
MaeI	CTAG	1 cut(s)	77
MaeII	ACGT	1 cut(s)	444
MaeIII	GTNAC	1 cut(s)	547
MalI	GATC	3 cut(s)	65, 169, 627
MbiI	CCGCTC	1 cut(s)	228
MboI	GATC	3 cut(s)	63, 167, 625
MboII	GAAGA	5 cut(s)	240, 314, 323, 680, 716
MflI	RGATCY	1 cut(s)	625
MhlI	GDGCHC	1 cut(s)	329
MlsI	TGGCCA	1 cut(s)	39
MluCI	AATT	1 cut(s)	456
MluNI	TGGCCA	1 cut(s)	39
Mly113I	GGCGCC	1 cut(s)	223
MlyI	GAGTC	2 cut(s)	120, 593
MmeI	TCCRAC	1 cut(s)	94
Mox20I	TGGCCA	1 cut(s)	39
MroXI	GAANNNNTTC	1 cut(s)	121
MscI	TGGCCA	1 cut(s)	39
MseI	TTAA	1 cut(s)	450
MslI	CAYNNNNRTG	1 cut(s)	411
Msp20I	TGGCCA	1 cut(s)	39
MspR9I	CCNGG	2 cut(s)	41, 439
MvaI	CCWGG	2 cut(s)	41, 439
MvnI	CGCG	1 cut(s)	673
MwoI	GCNNNNNNNGC	3 cut(s)	36, 242, 679
NarI	GGCGCC	1 cut(s)	223
NdeII	GATC	3 cut(s)	63, 167, 625
NlaIII	CATG	4 cut(s)	174, 410, 473, 704
NlaIV	GGNNCC	2 cut(s)	224, 627
NmuCI	GTSAC	1 cut(s)	547
NsbI	TGCGCA	1 cut(s)	261
NspI	RCATGY	1 cut(s)	473
PaeI	GCATGC	1 cut(s)	473
PauI	GCGCGC	1 cut(s)	671
PcsI	WCGNNNNNNNCGW	2 cut(s)	59, 95
PdmI	GAANNNNTTC	1 cut(s)	121
PfeI	GAWTC	2 cut(s)	95, 333
PflFI	GACNNNGTC	1 cut(s)	17
PkrI	GCNGC	5 cut(s)	130, 189, 199, 202, 227
PleI	GAGTC	2 cut(s)	119, 592
PluTI	GGCGCC	1 cut(s)	226
PpsI	GAGTC	2 cut(s)	119, 592
Psp124BI	GAGCTC	1 cut(s)	329
Psp6I	CCWGG	2 cut(s)	39, 437
PspGI	CCWGG	2 cut(s)	39, 437
PspN4I	GGNNCC	2 cut(s)	224, 627
PspPI	GGNCC	1 cut(s)	493
PsuI	RGATCY	1 cut(s)	625
PsyI	GACNNNGTC	1 cut(s)	17
PteI	GCGCGC	1 cut(s)	671
RsaI	GTAC	1 cut(s)	633
RsaNI	GTAC	1 cut(s)	632
RseI	CAYNNNNRTG	1 cut(s)	411
SacI	GAGCTC	1 cut(s)	329
SaqAI	TTAA	1 cut(s)	450
SatI	GCNGC	5 cut(s)	129, 188, 198, 201, 226
Sau3AI	GATC	3 cut(s)	63, 167, 625
Sau96I	GGNCC	1 cut(s)	493
SchI	GAGTC	2 cut(s)	120, 593
ScrFI	CCNGG	2 cut(s)	41, 439
SduI	GDGCHC	1 cut(s)	329
SetI	ASST	8 cut(s)	82, 185, 199, 285, 329, 447, 495, 667
SfaNI	GCATC	4 cut(s)	166, 508, 510, 556
SfcI	CTRYAG	1 cut(s)	588
SfoI	GGCGCC	1 cut(s)	224
SinI	GGWCC	1 cut(s)	493
SmiMI	CAYNNNNRTG	1 cut(s)	411
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
SphI	GCATGC	1 cut(s)	473
Sse9I	AATT	1 cut(s)	456
SsiI	CCGC	4 cut(s)	44, 128, 226, 403
SspDI	GGCGCC	1 cut(s)	222
SspMI	CTAG	1 cut(s)	77
SstI	GAGCTC	1 cut(s)	329
StyD4I	CCNGG	2 cut(s)	39, 437
TaiI	ACGT	1 cut(s)	447
TaqI	TCGA	5 cut(s)	25, 53, 89, 454, 661
TasI	AATT	1 cut(s)	456
TatI	WGTACW	1 cut(s)	631
TauI	GCSGC	2 cut(s)	131, 228
TfiI	GAWTC	2 cut(s)	95, 333
Tru1I	TTAA	1 cut(s)	450
Tru9I	TTAA	1 cut(s)	450
TseFI	GTSAC	1 cut(s)	547
TseI	GCWGC	3 cut(s)	187, 197, 200
Tsp45I	GTSAC	1 cut(s)	547
TspDTI	ATGAA	5 cut(s)	315, 423, 476, 680, 717
Tth111I	GACNNNGTC	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	493
XceI	RCATGY	1 cut(s)	473
XmnI	GAANNNNTTC	1 cut(s)	121
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.