Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0015353

Physical Location & Seq

Genomic Coordinates Forward (+)

67503775 .. 67504637

Gene Structure 863 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0492500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGACCCAAGAGCCACGAACTCTGCAACTAATGGAGCTCCAAACCCCGCAACAAATGGAACCACAACAACAGCAACCAACAGAGGAGGGAGGAAACACCCAAGCAGCTGGAAGTAGTGCCAACATGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGAACAAATAAGAATCCTCAAGGATCTTTACTATGTCAAGGGATTTAAGTGCCCAACTACAGAGCAGATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGGTATGTTGAGGGTAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAATAGGTGTAATCAGGCTGCTCCAGTGCCCATGAGAACTAGTTCTCTTGGTACTGGTAGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGTGGATCCATCGACATCAATTTTGGGCCAGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGTAGATCCATTGATCTCAACTTTGGTTCCACCTATTCTACTGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTCAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCTGAAGACTACTTCCGAGGAAGGTAGTGCACATGATTACTATTTCGGTGGCTCAGGCGGTTACAACCGTGGATCTCCAGTTTCTCTTGAGCTCAGCCTCAACCCATCCGGAGCTGCTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0033554 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0050897 GO:0051716 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rad52_Rad22

Protein Analysis

257

Amino Acids

28.1

Weight (kDa)

5.04

Isoelectric Point (pI)

47.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	48 - 109	6.1e-09	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71310 AT1G71310 AT1G71310
fragaria_vesca	FvH4_2g00170
malus_domestica	MD05G1000800.v1.1
prunus_persica	Prupe.8G001500_v2.0.a1
pyrus_communis	pycom215g00020
rosa_chinensis	RchiOBHm_Chr6g0249441
rosa_laevigata	RLG00000015579
rosa_multiflora	Rmu_ssc0000459.1_g000022
rosa_roxburghii	Rroxscaffold_7G00217710
rosa_rugosa	Rorug05G0492500
rosa_samantha	Rh6AG002200 Rh6CG001400 Rh6DG001400
rosa_wichuraiana	Rw6G000280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	642
AccB7I	CCANNNNNTGG	1 cut(s)	467
AccIII	TCCGGA	1 cut(s)	758
AciI	CCGC	2 cut(s)	47, 708
AclWI	GGATC	8 cut(s)	195, 384, 432, 445, 465, 478, 513, 730
AcuI	CTGAAG	1 cut(s)	674
AcyI	GRCGYC	1 cut(s)	639
AfaI	GTAC	2 cut(s)	145, 382
AfiI	CCNNNNNNNGG	2 cut(s)	467, 629
AgsI	TTSAA	1 cut(s)	605
AhlI	ACTAGT	2 cut(s)	368, 497
AjnI	CCWGG	2 cut(s)	146, 594
AjuI	GAANNNNNNNTTGG	2 cut(s)	113, 145
AluBI	AGCT	6 cut(s)	37, 107, 253, 464, 742, 764
AluI	AGCT	6 cut(s)	37, 107, 253, 464, 742, 764
Alw21I	GWGCWC	4 cut(s)	39, 630, 682, 744
Alw26I	GTCTC	1 cut(s)	251
Alw44I	GTGCAC	2 cut(s)	626, 678
AlwI	GGATC	8 cut(s)	195, 384, 432, 445, 465, 478, 513, 730
Ama87I	CYCGRG	1 cut(s)	315
Aor13HI	TCCGGA	1 cut(s)	758
AoxI	GGCC	1 cut(s)	458
ApaLI	GTGCAC	2 cut(s)	626, 678
ApeKI	GCWGC	3 cut(s)	104, 347, 764
ArsI	GACNNNNNNTTYG	4 cut(s)	437, 469, 470, 502
Asp700I	GAANNNNTTC	1 cut(s)	370
AspS9I	GGNCC	3 cut(s)	411, 458, 492
AsuHPI	GGTGA	1 cut(s)	584
AvaI	CYCGRG	1 cut(s)	315
AvaII	GGWCC	2 cut(s)	411, 492
BaeGI	GKGCMC	4 cut(s)	218, 360, 630, 682
BamHI	GGATCC	2 cut(s)	437, 470
BanII	GRGCYC	3 cut(s)	39, 316, 744
BauI	CACGAG	1 cut(s)	236
BbsI	GAAGAC	1 cut(s)	662
Bbv12I	GWGCWC	4 cut(s)	39, 630, 682, 744
BbvI	GCAGC	3 cut(s)	116, 334, 751
BccI	CCATC	3 cut(s)	449, 506, 763
BceAI	ACGGC	2 cut(s)	126, 646
BciT130I	CCWGG	2 cut(s)	148, 596
BcoDI	GTCTC	1 cut(s)	251
BcuI	ACTAGT	2 cut(s)	368, 497
BfaI	CTAG	3 cut(s)	369, 498, 772
BfmI	CTRYAG	1 cut(s)	222
BglII	AGATCT	1 cut(s)	240
BisI	GCNGC	3 cut(s)	105, 348, 765
BlpI	GCTNAGC	1 cut(s)	743
BlsI	GCNGC	3 cut(s)	106, 349, 766
Bme1390I	CCNGG	2 cut(s)	148, 596
Bme18I	GGWCC	2 cut(s)	411, 492
BmeT110I	CYCGRG	1 cut(s)	315
BmgT120I	GGNCC	3 cut(s)	411, 458, 492
BmiI	GGNNCC	7 cut(s)	60, 299, 412, 439, 472, 493, 541
BmrFI	CCNGG	2 cut(s)	148, 596
BpiI	GAAGAC	1 cut(s)	662
BpmI	CTGGAG	5 cut(s)	147, 233, 336, 576, 711
Bpu10I	CCTNAGC	1 cut(s)	703
Bpu1102I	GCTNAGC	1 cut(s)	743
BpuEI	CTTGAG	2 cut(s)	167, 758
BsaHI	GRCGYC	1 cut(s)	639
BsaJI	CCNNGG	2 cut(s)	666, 718
BsaWI	WCCGGW	1 cut(s)	758
Bsc4I	CCNNNNNNNGG	2 cut(s)	467, 629
Bse1I	ACTGG	7 cut(s)	259, 353, 388, 421, 430, 559, 728
BseAI	TCCGGA	1 cut(s)	758
BseBI	CCWGG	2 cut(s)	148, 596
BseDI	CCNNGG	2 cut(s)	666, 718
BseGI	GGATG	2 cut(s)	566, 755
BseLI	CCNNNNNNNGG	2 cut(s)	467, 629
BseMII	CTCAG	2 cut(s)	717, 757
BseNI	ACTGG	7 cut(s)	259, 353, 388, 421, 430, 559, 728
BseRI	GAGGAG	3 cut(s)	98, 597, 600
BseSI	GKGCMC	4 cut(s)	218, 360, 630, 682
BseXI	GCAGC	3 cut(s)	116, 334, 751
BshFI	GGCC	1 cut(s)	460
BsiHKAI	GWGCWC	4 cut(s)	39, 630, 682, 744
BsiHKCI	CYCGRG	1 cut(s)	315
BsiSI	CCGG	1 cut(s)	759
BslI	CCNNNNNNNGG	2 cut(s)	467, 629
BsmAI	GTCTC	1 cut(s)	251
BsnI	GGCC	1 cut(s)	460
BsoBI	CYCGRG	1 cut(s)	315
Bsp1286I	GDGCHC	7 cut(s)	39, 218, 316, 360, 630, 682, 744
Bsp13I	TCCGGA	1 cut(s)	758
Bsp1720I	GCTNAGC	1 cut(s)	743
BspACI	CCGC	2 cut(s)	47, 708
BspANI	GGCC	1 cut(s)	460
BspCNI	CTCAG	2 cut(s)	716, 756
BspEI	TCCGGA	1 cut(s)	758
BspLI	GGNNCC	7 cut(s)	60, 299, 412, 439, 472, 493, 541
BspPI	GGATC	8 cut(s)	195, 384, 432, 445, 465, 478, 513, 730
BsrI	ACTGG	7 cut(s)	259, 353, 388, 421, 430, 559, 728
BssECI	CCNNGG	2 cut(s)	666, 718
BssNI	GRCGYC	1 cut(s)	639
BssSI	CACGAG	1 cut(s)	236
Bst2BI	CACGAG	1 cut(s)	236
Bst2UI	CCWGG	2 cut(s)	148, 596
Bst4CI	ACNGT	1 cut(s)	719
Bst6I	CTCTTC	1 cut(s)	615
BstACI	GRCGYC	1 cut(s)	639
BstC8I	GCNNGC	1 cut(s)	462
BstDEI	CTNAG	2 cut(s)	703, 743
BstDSI	CCRYGG	1 cut(s)	718
BstEII	GGTNACC	1 cut(s)	647
BstF5I	GGATG	2 cut(s)	566, 755
BstMAI	GTCTC	1 cut(s)	251
BstNI	CCWGG	2 cut(s)	148, 596
BstPI	GGTNACC	1 cut(s)	647
BstSCI	CCNGG	2 cut(s)	146, 594
BstSFI	CTRYAG	1 cut(s)	222
BstSLI	GKGCMC	4 cut(s)	218, 360, 630, 682
BstV1I	GCAGC	3 cut(s)	116, 334, 751
BstV2I	GAAGAC	1 cut(s)	662
BstX2I	RGATCY	7 cut(s)	187, 240, 389, 437, 470, 518, 722
BstXI	CCANNNNNNTGG	1 cut(s)	107
BstYI	RGATCY	7 cut(s)	187, 240, 389, 437, 470, 518, 722
BsuRI	GGCC	1 cut(s)	460
BtgI	CCRYGG	1 cut(s)	718
BtsCI	GGATG	2 cut(s)	566, 755
BtsIMutI	CAGTG	2 cut(s)	360, 414
Cac8I	GCNNGC	1 cut(s)	462
Cfr13I	GGNCC	3 cut(s)	411, 458, 492
CsiI	ACCWGGT	1 cut(s)	146
Csp6I	GTAC	2 cut(s)	144, 381
CviAII	CATG	3 cut(s)	124, 361, 683
CviQI	GTAC	2 cut(s)	144, 381
DdeI	CTNAG	2 cut(s)	703, 743
Eam1104I	CTCTTC	1 cut(s)	615
EarI	CTCTTC	1 cut(s)	615
Ecl136II	GAGCTC	2 cut(s)	37, 742
Eco24I	GRGCYC	3 cut(s)	39, 316, 744
Eco47I	GGWCC	2 cut(s)	411, 492
Eco53kI	GAGCTC	2 cut(s)	37, 742
Eco57I	CTGAAG	1 cut(s)	674
Eco88I	CYCGRG	1 cut(s)	315
Eco91I	GGTNACC	1 cut(s)	647
EcoICRI	GAGCTC	2 cut(s)	37, 742
EcoO65I	GGTNACC	1 cut(s)	647
EcoRII	CCWGG	2 cut(s)	146, 594
EcoT38I	GRGCYC	3 cut(s)	39, 316, 744
FaeI	CATG	3 cut(s)	127, 364, 686
FaiI	YATR	6 cut(s)	125, 198, 264, 270, 362, 684
FatI	CATG	3 cut(s)	123, 360, 682
FauI	CCCGC	1 cut(s)	54
Fnu4HI	GCNGC	3 cut(s)	105, 348, 765
FokI	GGATG	2 cut(s)	553, 742
FriOI	GRGCYC	3 cut(s)	39, 316, 744
Fsp4HI	GCNGC	3 cut(s)	105, 348, 765
FspBI	CTAG	3 cut(s)	369, 498, 772
GluI	GCNGC	3 cut(s)	105, 348, 765
GsuI	CTGGAG	5 cut(s)	147, 233, 336, 576, 711
HaeIII	GGCC	1 cut(s)	460
HapII	CCGG	1 cut(s)	759
Hin1I	GRCGYC	1 cut(s)	639
Hin1II	CATG	3 cut(s)	127, 364, 686
HinfI	GANTC	3 cut(s)	154, 177, 232
HpaII	CCGG	1 cut(s)	759
HphI	GGTGA	1 cut(s)	584
Hpy166II	GTNNAC	4 cut(s)	414, 495, 628, 680
Hpy188I	TCNGA	1 cut(s)	667
Hpy188III	TCNNGA	6 cut(s)	164, 236, 301, 317, 737, 759
Hpy8I	GTNNAC	4 cut(s)	414, 495, 628, 680
HpyAV	CCTTC	1 cut(s)	665
HpyCH4III	ACNGT	1 cut(s)	719
HpyCH4IV	ACGT	2 cut(s)	306, 639
HpyCH4V	TGCA	4 cut(s)	25, 574, 628, 680
HpyF3I	CTNAG	2 cut(s)	703, 743
HpySE526I	ACGT	2 cut(s)	306, 639
Hsp92I	GRCGYC	1 cut(s)	639
Hsp92II	CATG	3 cut(s)	127, 364, 686
Kpn2I	TCCGGA	1 cut(s)	758
LmnI	GCTCC	4 cut(s)	34, 42, 355, 761
Lsp1109I	GCAGC	3 cut(s)	116, 334, 751
MabI	ACCWGGT	1 cut(s)	146
MaeI	CTAG	3 cut(s)	369, 498, 772
MaeII	ACGT	2 cut(s)	306, 639
MaeIII	GTNAC	2 cut(s)	647, 710
MboII	GAAGA	2 cut(s)	602, 667
MflI	RGATCY	7 cut(s)	187, 240, 389, 437, 470, 518, 722
MhlI	GDGCHC	7 cut(s)	39, 218, 316, 360, 630, 682, 744
MluCI	AATT	3 cut(s)	403, 451, 484
MroI	TCCGGA	1 cut(s)	758
MroXI	GAANNNNTTC	1 cut(s)	370
MseI	TTAA	1 cut(s)	210
MspA1I	CMGCKG	3 cut(s)	107, 253, 464
MspI	CCGG	1 cut(s)	759
MspR9I	CCNGG	2 cut(s)	148, 596
MvaI	CCWGG	2 cut(s)	148, 596
NlaIII	CATG	3 cut(s)	127, 364, 686
NlaIV	GGNNCC	7 cut(s)	60, 299, 412, 439, 472, 493, 541
PaeR7I	CTCGAG	1 cut(s)	315
PcsI	WCGNNNNNNNCGW	1 cut(s)	636
PdmI	GAANNNNTTC	1 cut(s)	370
PfeI	GAWTC	3 cut(s)	154, 177, 232
PflMI	CCANNNNNTGG	1 cut(s)	467
PkrI	GCNGC	3 cut(s)	106, 349, 766
Psp124BI	GAGCTC	2 cut(s)	39, 744
Psp6I	CCWGG	2 cut(s)	146, 594
PspEI	GGTNACC	1 cut(s)	647
PspGI	CCWGG	2 cut(s)	146, 594
PspN4I	GGNNCC	7 cut(s)	60, 299, 412, 439, 472, 493, 541
PspPI	GGNCC	3 cut(s)	411, 458, 492
PsuI	RGATCY	7 cut(s)	187, 240, 389, 437, 470, 518, 722
PvuII	CAGCTG	3 cut(s)	107, 253, 464
RsaI	GTAC	2 cut(s)	145, 382
RsaNI	GTAC	2 cut(s)	144, 381
SacI	GAGCTC	2 cut(s)	39, 744
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	3 cut(s)	105, 348, 765
Sau96I	GGNCC	3 cut(s)	411, 458, 492
ScrFI	CCNGG	2 cut(s)	148, 596
SduI	GDGCHC	7 cut(s)	39, 218, 316, 360, 630, 682, 744
SexAI	ACCWGGT	1 cut(s)	146
SfcI	CTRYAG	1 cut(s)	222
Sfr274I	CTCGAG	1 cut(s)	315
SinI	GGWCC	2 cut(s)	411, 492
SlaI	CTCGAG	1 cut(s)	315
SmlI	CTYRAG	3 cut(s)	182, 315, 737
SmoI	CTYRAG	3 cut(s)	182, 315, 737
SpeI	ACTAGT	2 cut(s)	368, 497
Sse9I	AATT	3 cut(s)	403, 451, 484
SsiI	CCGC	2 cut(s)	47, 708
SspMI	CTAG	3 cut(s)	369, 498, 772
SstI	GAGCTC	2 cut(s)	39, 744
StyD4I	CCNGG	2 cut(s)	146, 594
TaaI	ACNGT	1 cut(s)	719
TaiI	ACGT	2 cut(s)	309, 642
TaqI	TCGA	2 cut(s)	316, 444
TasI	AATT	3 cut(s)	403, 451, 484
TfiI	GAWTC	3 cut(s)	154, 177, 232
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	2 cut(s)	360, 421
TseI	GCWGC	3 cut(s)	104, 347, 764
TspDTI	ATGAA	1 cut(s)	344
TspRI	CASTG	2 cut(s)	360, 421
Van91I	CCANNNNNTGG	1 cut(s)	467
VneI	GTGCAC	2 cut(s)	626, 678
VpaK11BI	GGWCC	2 cut(s)	411, 492
XhoI	CTCGAG	1 cut(s)	315
XmnI	GAANNNNTTC	1 cut(s)	370
XspI	CTAG	3 cut(s)	369, 498, 772
ZraI	GACGTC	1 cut(s)	640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.