Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0015353

Physical Location & Seq

Genomic Coordinates Reverse (-)

134377 .. 136578

Gene Structure 2202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G001500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCGCAATCAGTCACTTCTAAATCCTCTATGTTGAGATCGCTGTGTGTAGCTGTGGGTGAAGGGTCACCGTGGCGGCGTTCCTACGCCAAGTTGGCCTCTTCTTCTAATGCAGAAGGGCGGATGGAGAAACAAGCAGAAGAAGAGGGAGGAGACGACGGCTTCGCAGTGAGCTCGGGAATCAGCAGACCCCTCTCTGAAATCCTCAAGCAACTCAACAAGAAAGTCCCTGATTCCCTCGTCAAAACCCGCTCTGAAAGTGGCTTTACCTCCAAATACATCCCCTGGCACATTGTTAATCGGATTATGAACTTGCATGCTCCAGAATGGTCCGGTGAGGTTCGCAGCATCACTTACTCTGCTGATGCCAAGTCTGTATCTGTTGTTTATCGTGTCACGCTCTATGGCACTGATGCTGAGATCTTTAGGGAGTCGACCGGCACTGCTTCAGTAGATGACACAAGTTTTGGGGATCCTGTACAGAAGGCAGAAGCAATGGCATTTCGTCGTGCTTGTGCACGTTTTGGTCTTGGGCTTCATCTTTATCACGAGGATTTGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0033554 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0050897 GO:0051716 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rad52_Rad22

Protein Analysis

188

Amino Acids

20.48

Weight (kDa)

6.91

Isoelectric Point (pI)

55.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71310 AT1G71310 AT1G71310
fragaria_vesca	FvH4_2g00170
malus_domestica	MD05G1000800.v1.1
prunus_persica	Prupe.8G001500_v2.0.a1
pyrus_communis	pycom215g00020
rosa_chinensis	RchiOBHm_Chr6g0249441
rosa_laevigata	RLG00000015579
rosa_multiflora	Rmu_ssc0000459.1_g000022
rosa_roxburghii	Rroxscaffold_7G00217710
rosa_rugosa	Rorug05G0492500
rosa_samantha	Rh6AG002200 Rh6CG001400 Rh6DG001400
rosa_wichuraiana	Rw6G000280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	252
AccI	GTMKAC	1 cut(s)	434
AciI	CCGC	3 cut(s)	76, 121, 250
AclWI	GGATC	2 cut(s)	467, 480
AcuI	CTGAAG	1 cut(s)	432
AfaI	GTAC	1 cut(s)	480
AjnI	CCWGG	1 cut(s)	284
AluBI	AGCT	2 cut(s)	53, 174
AluI	AGCT	2 cut(s)	53, 174
Alw21I	GWGCWC	2 cut(s)	176, 520
Alw26I	GTCTC	1 cut(s)	147
Alw44I	GTGCAC	1 cut(s)	516
AlwI	GGATC	2 cut(s)	467, 480
Ama87I	CYCGRG	1 cut(s)	175
AoxI	GGCC	1 cut(s)	96
ApaLI	GTGCAC	1 cut(s)	516
ApeKI	GCWGC	1 cut(s)	345
ArsI	GACNNNNNNTTYG	4 cut(s)	146, 178, 449, 481
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	330
AsuHPI	GGTGA	3 cut(s)	60, 71, 347
AvaI	CYCGRG	1 cut(s)	175
AvaII	GGWCC	1 cut(s)	330
BaeGI	GKGCMC	1 cut(s)	520
BamHI	GGATCC	1 cut(s)	472
BanII	GRGCYC	1 cut(s)	176
BauI	CACGAG	1 cut(s)	548
Bbv12I	GWGCWC	2 cut(s)	176, 520
BbvI	GCAGC	1 cut(s)	357
BccI	CCATC	1 cut(s)	118
BceAI	ACGGC	1 cut(s)	175
BcgI	CGANNNNNNTGC	2 cut(s)	156, 190
BciT130I	CCWGG	1 cut(s)	286
BcoDI	GTCTC	1 cut(s)	147
BfaI	CTAG	1 cut(s)	562
BglI	GCCNNNNNGGC	1 cut(s)	95
BglII	AGATCT	1 cut(s)	420
BisI	GCNGC	2 cut(s)	77, 346
BlsI	GCNGC	2 cut(s)	78, 347
Bme1390I	CCNGG	1 cut(s)	286
Bme18I	GGWCC	1 cut(s)	330
BmeT110I	CYCGRG	1 cut(s)	175
BmgT120I	GGNCC	1 cut(s)	330
BmiI	GGNNCC	1 cut(s)	474
BmrFI	CCNGG	1 cut(s)	286
BmsI	GCATC	3 cut(s)	355, 357, 403
BpmI	CTGGAG	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	191
BsaJI	CCNNGG	2 cut(s)	71, 284
BsaWI	WCCGGW	1 cut(s)	332
Bse118I	RCCGGY	1 cut(s)	437
Bse3DI	GCAATG	1 cut(s)	501
BseBI	CCWGG	1 cut(s)	286
BseDI	CCNNGG	2 cut(s)	71, 284
BseGI	GGATG	2 cut(s)	129, 279
BseMI	GCAATG	1 cut(s)	501
BseMII	CTCAG	1 cut(s)	408
BseRI	GAGGAG	1 cut(s)	165
BseSI	GKGCMC	1 cut(s)	520
BseXI	GCAGC	1 cut(s)	357
Bsh1285I	CGRYCG	1 cut(s)	438
BshFI	GGCC	1 cut(s)	98
BsiEI	CGRYCG	1 cut(s)	438
BsiHKAI	GWGCWC	2 cut(s)	176, 520
BsiHKCI	CYCGRG	1 cut(s)	175
BsiSI	CCGG	2 cut(s)	333, 438
BslFI	GGGAC	1 cut(s)	212
BsmAI	GTCTC	1 cut(s)	147
BsmBI	CGTCTC	1 cut(s)	147
BsmFI	GGGAC	1 cut(s)	212
BsnI	GGCC	1 cut(s)	98
BsoBI	CYCGRG	1 cut(s)	175
Bsp1286I	GDGCHC	2 cut(s)	176, 520
Bsp1407I	TGTACA	1 cut(s)	478
Bsp143I	GATC	3 cut(s)	38, 420, 472
BspACI	CCGC	3 cut(s)	76, 121, 250
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	1 cut(s)	409
BspLI	GGNNCC	1 cut(s)	474
BspPI	GGATC	2 cut(s)	467, 480
BsrBI	CCGCTC	1 cut(s)	252
BsrDI	GCAATG	1 cut(s)	501
BsrFI	RCCGGY	1 cut(s)	437
BsrGI	TGTACA	1 cut(s)	478
BssAI	RCCGGY	1 cut(s)	437
BssECI	CCNNGG	2 cut(s)	71, 284
BssMI	GATC	3 cut(s)	38, 420, 472
BssSI	CACGAG	1 cut(s)	548
Bst2BI	CACGAG	1 cut(s)	548
Bst2UI	CCWGG	1 cut(s)	286
Bst4CI	ACNGT	1 cut(s)	72
Bst6I	CTCTTC	2 cut(s)	106, 138
BstAUI	TGTACA	1 cut(s)	478
BstC8I	GCNNGC	1 cut(s)	318
BstDEI	CTNAG	1 cut(s)	417
BstDSI	CCRYGG	1 cut(s)	71
BstEII	GGTNACC	1 cut(s)	66
BstF5I	GGATG	2 cut(s)	129, 279
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	3 cut(s)	41, 423, 475
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	3 cut(s)	38, 420, 472
BstMCI	CGRYCG	1 cut(s)	438
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstNI	CCWGG	1 cut(s)	286
BstNSI	RCATGY	1 cut(s)	320
BstPI	GGTNACC	1 cut(s)	66
BstSCI	CCNGG	1 cut(s)	284
BstSLI	GKGCMC	1 cut(s)	520
BstV1I	GCAGC	1 cut(s)	357
BstX2I	RGATCY	2 cut(s)	420, 472
BstYI	RGATCY	2 cut(s)	420, 472
BsuRI	GGCC	1 cut(s)	98
BtgI	CCRYGG	1 cut(s)	71
BtsCI	GGATG	2 cut(s)	129, 279
BtsI	GCAGTG	2 cut(s)	174, 441
BtsIMutI	CAGTG	3 cut(s)	174, 408, 441
Cac8I	GCNNGC	1 cut(s)	318
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	437
Cfr13I	GGNCC	1 cut(s)	330
Csp6I	GTAC	1 cut(s)	479
CviAII	CATG	1 cut(s)	317
CviJI	RGCY	6 cut(s)	53, 98, 162, 174, 264, 535
CviKI_1	RGCY	6 cut(s)	53, 98, 162, 174, 264, 535
CviQI	GTAC	1 cut(s)	479
DdeI	CTNAG	1 cut(s)	417
DpnI	GATC	3 cut(s)	40, 422, 474
DpnII	GATC	3 cut(s)	38, 420, 472
Eam1104I	CTCTTC	2 cut(s)	106, 138
EarI	CTCTTC	2 cut(s)	106, 138
EciI	GGCGGA	1 cut(s)	136
Ecl136II	GAGCTC	1 cut(s)	174
Eco24I	GRGCYC	1 cut(s)	176
Eco47I	GGWCC	1 cut(s)	330
Eco53kI	GAGCTC	1 cut(s)	174
Eco57I	CTGAAG	1 cut(s)	432
Eco88I	CYCGRG	1 cut(s)	175
Eco91I	GGTNACC	1 cut(s)	66
EcoICRI	GAGCTC	1 cut(s)	174
EcoO65I	GGTNACC	1 cut(s)	66
EcoRII	CCWGG	1 cut(s)	284
EcoT38I	GRGCYC	1 cut(s)	176
Esp3I	CGTCTC	1 cut(s)	147
FaeI	CATG	1 cut(s)	320
FaiI	YATR	4 cut(s)	32, 308, 318, 405
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	1 cut(s)	316
FauI	CCCGC	1 cut(s)	257
FblI	GTMKAC	1 cut(s)	434
Fnu4HI	GCNGC	2 cut(s)	77, 346
FokI	GGATG	2 cut(s)	136, 266
FriOI	GRGCYC	1 cut(s)	176
Fsp4HI	GCNGC	2 cut(s)	77, 346
FspBI	CTAG	1 cut(s)	562
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	2 cut(s)	77, 346
GsuI	CTGGAG	1 cut(s)	306
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	2 cut(s)	333, 438
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	1 cut(s)	320
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	435
HindII	GTYRAC	1 cut(s)	435
HinfI	GANTC	3 cut(s)	180, 233, 431
HpaII	CCGG	2 cut(s)	333, 438
HphI	GGTGA	3 cut(s)	60, 71, 347
Hpy166II	GTNNAC	2 cut(s)	435, 518
Hpy188I	TCNGA	3 cut(s)	199, 256, 303
Hpy188III	TCNNGA	3 cut(s)	177, 323, 548
Hpy8I	GTNNAC	2 cut(s)	435, 518
Hpy99I	CGWCG	2 cut(s)	161, 510
HpyAV	CCTTC	3 cut(s)	56, 110, 478
HpyCH4III	ACNGT	1 cut(s)	72
HpyCH4IV	ACGT	1 cut(s)	520
HpyCH4V	TGCA	3 cut(s)	113, 316, 518
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpyF3I	CTNAG	1 cut(s)	417
HpySE526I	ACGT	1 cut(s)	520
Hsp92II	CATG	1 cut(s)	320
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	3 cut(s)	38, 420, 472
LmnI	GCTCC	1 cut(s)	325
LpnPI	CCDG	7 cut(s)	243, 271, 298, 336, 346, 451, 489
Lsp1109I	GCAGC	1 cut(s)	357
LweI	GCATC	3 cut(s)	355, 357, 403
MaeI	CTAG	1 cut(s)	562
MaeII	ACGT	1 cut(s)	520
MaeIII	GTNAC	3 cut(s)	13, 66, 394
MalI	GATC	3 cut(s)	40, 422, 474
MbiI	CCGCTC	1 cut(s)	252
MboI	GATC	3 cut(s)	38, 420, 472
MboII	GAAGA	4 cut(s)	93, 96, 152, 155
MflI	RGATCY	2 cut(s)	420, 472
MhlI	GDGCHC	2 cut(s)	176, 520
MlyI	GAGTC	1 cut(s)	440
MseI	TTAA	1 cut(s)	297
MspI	CCGG	2 cut(s)	333, 438
MspR9I	CCNGG	1 cut(s)	286
MvaI	CCWGG	1 cut(s)	286
MwoI	GCNNNNNNNGC	1 cut(s)	95
NdeII	GATC	3 cut(s)	38, 420, 472
NlaIII	CATG	1 cut(s)	320
NlaIV	GGNNCC	1 cut(s)	474
NmuCI	GTSAC	3 cut(s)	13, 66, 394
NspI	RCATGY	1 cut(s)	320
PaeI	GCATGC	1 cut(s)	320
PfeI	GAWTC	2 cut(s)	180, 233
PkrI	GCNGC	2 cut(s)	78, 347
PleI	GAGTC	1 cut(s)	439
PpsI	GAGTC	1 cut(s)	439
Psp124BI	GAGCTC	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	284
PspEI	GGTNACC	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	284
PspN4I	GGNNCC	1 cut(s)	474
PspPI	GGNCC	1 cut(s)	330
PsuI	RGATCY	2 cut(s)	420, 472
RsaI	GTAC	1 cut(s)	480
RsaNI	GTAC	1 cut(s)	479
SacI	GAGCTC	1 cut(s)	176
SalI	GTCGAC	1 cut(s)	433
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	2 cut(s)	77, 346
Sau3AI	GATC	3 cut(s)	38, 420, 472
Sau96I	GGNCC	1 cut(s)	330
SchI	GAGTC	1 cut(s)	440
ScrFI	CCNGG	1 cut(s)	286
SduI	GDGCHC	2 cut(s)	176, 520
SetI	ASST	5 cut(s)	55, 176, 272, 342, 523
SfaNI	GCATC	3 cut(s)	355, 357, 403
SinI	GGWCC	1 cut(s)	330
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
SphI	GCATGC	1 cut(s)	320
SsiI	CCGC	3 cut(s)	76, 121, 250
SspMI	CTAG	1 cut(s)	562
SstI	GAGCTC	1 cut(s)	176
StyD4I	CCNGG	1 cut(s)	284
TaaI	ACNGT	1 cut(s)	72
TaiI	ACGT	1 cut(s)	523
TaqI	TCGA	1 cut(s)	434
TatI	WGTACW	1 cut(s)	478
TauI	GCSGC	1 cut(s)	79
TfiI	GAWTC	2 cut(s)	180, 233
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TscAI	CASTG	3 cut(s)	174, 415, 448
TseFI	GTSAC	3 cut(s)	13, 66, 394
TseI	GCWGC	1 cut(s)	345
Tsp45I	GTSAC	3 cut(s)	13, 66, 394
TspDTI	ATGAA	2 cut(s)	323, 527
TspRI	CASTG	3 cut(s)	174, 415, 448
VneI	GTGCAC	1 cut(s)	516
VpaK11BI	GGWCC	1 cut(s)	330
XceI	RCATGY	1 cut(s)	320
XmiI	GTMKAC	1 cut(s)	434
XspI	CTAG	1 cut(s)	562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.