Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0015353

Physical Location & Seq

Genomic Coordinates Reverse (-)

272210 .. 274579

Gene Structure 2370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g00170.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCTTATGGCTGTAGATCTTGCTTATTGGGGTCGCTGCGAGTAGCTGCTGGGTGGCGCCGTTCCTACGTCAAGTTGGCCTCTTCGTCGTATGCGCAAGGGGGAAGGGAAATTGAAGCTGATGAAGATGAAGATTTCCCTGTCAGCTCCGGAATCAGCAGACCCCTCTCTGAAATCCTCAAGCAAATCAATAAGAAAGTCCCTGATACCCTCGTTAAATCCCGCCATGAAAATGGGTTTACATCCAAATACATCCCCTGGCACATAGTTAATCGAATCATGAATTTGCATGCTCCAGAATGGTCTGGTGAGGTCCGAAGCATCACATACTCTGCTGATGCCAAGTCGGTTTCTGTTGTTTATCGTGTCACGCTCTACGGAACTGATGCTGAGATATTTAGGGAGTCTATTGGCACTGCTTCAGTAGATGACACAAGTTATGGGGATCCAGTACAGAAGGCTGAAGCAATGGCATTTCGTCGAGCTTGCGCGCGCTTTGGGCTTGGTCTTCATCTTTACCATGAAGATTTATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0033554 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0050897 GO:0051716 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rad52_Rad22

Protein Analysis

179

Amino Acids

19.81

Weight (kDa)

6.96

Isoelectric Point (pI)

53.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71310 AT1G71310 AT1G71310
fragaria_vesca	FvH4_2g00170
malus_domestica	MD05G1000800.v1.1
prunus_persica	Prupe.8G001500_v2.0.a1
pyrus_communis	pycom215g00020
rosa_chinensis	RchiOBHm_Chr6g0249441
rosa_laevigata	RLG00000015579
rosa_multiflora	Rmu_ssc0000459.1_g000022
rosa_roxburghii	Rroxscaffold_7G00217710
rosa_rugosa	Rorug05G0492500
rosa_samantha	Rh6AG002200 Rh6CG001400 Rh6DG001400
rosa_wichuraiana	Rw6G000280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	96
AccB1I	GGYRCC	1 cut(s)	57
AccII	CGCG	2 cut(s)	491, 493
AccIII	TCCGGA	1 cut(s)	149
AciI	CCGC	1 cut(s)	223
AclWI	GGATC	2 cut(s)	440, 453
AcsI	RAATTY	1 cut(s)	283
AcuI	CTGAAG	2 cut(s)	405, 483
AcyI	GRCGYC	1 cut(s)	58
AfaI	GTAC	1 cut(s)	453
AgsI	TTSAA	1 cut(s)	116
AjnI	CCWGG	1 cut(s)	257
AluBI	AGCT	4 cut(s)	47, 119, 147, 485
AluI	AGCT	4 cut(s)	47, 119, 147, 485
AlwI	GGATC	2 cut(s)	440, 453
Aor13HI	TCCGGA	1 cut(s)	149
AoxI	GGCC	1 cut(s)	78
ApeKI	GCWGC	2 cut(s)	37, 47
ApoI	RAATTY	1 cut(s)	283
AspLEI	GCGC	5 cut(s)	60, 97, 491, 493, 495
AspS9I	GGNCC	1 cut(s)	313
AsuHPI	GGTGA	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	313
BaeI	ACNNNNGTAYC	2 cut(s)	198, 231
BamHI	GGATCC	1 cut(s)	445
BanI	GGYRCC	1 cut(s)	57
BbsI	GAAGAC	1 cut(s)	500
BbvI	GCAGC	2 cut(s)	24, 34
BceAI	ACGGC	1 cut(s)	45
BciT130I	CCWGG	1 cut(s)	259
BfmI	CTRYAG	1 cut(s)	13
BfoI	RGCGCY	1 cut(s)	61
BglII	AGATCT	1 cut(s)	17
BisI	GCNGC	2 cut(s)	38, 48
BlsI	GCNGC	2 cut(s)	39, 49
Bme1390I	CCNGG	1 cut(s)	259
Bme18I	GGWCC	1 cut(s)	313
BmgT120I	GGNCC	1 cut(s)	313
BmiI	GGNNCC	2 cut(s)	59, 447
BmrFI	CCNGG	1 cut(s)	259
BmsI	GCATC	3 cut(s)	328, 330, 376
BpiI	GAAGAC	1 cut(s)	500
BpmI	CTGGAG	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	164
BsaHI	GRCGYC	1 cut(s)	58
BsaJI	CCNNGG	1 cut(s)	257
BsaWI	WCCGGW	1 cut(s)	149
Bse1I	ACTGG	1 cut(s)	449
Bse3DI	GCAATG	1 cut(s)	474
BseAI	TCCGGA	1 cut(s)	149
BseBI	CCWGG	1 cut(s)	259
BseDI	CCNNGG	1 cut(s)	257
BseGI	GGATG	2 cut(s)	242, 252
BseMI	GCAATG	1 cut(s)	474
BseMII	CTCAG	1 cut(s)	381
BseNI	ACTGG	1 cut(s)	449
BsePI	GCGCGC	2 cut(s)	489, 491
BseXI	GCAGC	2 cut(s)	24, 34
BseYI	CCCAGC	1 cut(s)	50
Bsh1236I	CGCG	2 cut(s)	491, 493
BshFI	GGCC	1 cut(s)	80
BshNI	GGYRCC	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	150
BslFI	GGGAC	1 cut(s)	185
BsmFI	GGGAC	1 cut(s)	185
BsnI	GGCC	1 cut(s)	80
Bsp13I	TCCGGA	1 cut(s)	149
Bsp143I	GATC	2 cut(s)	17, 445
BspACI	CCGC	1 cut(s)	223
BspANI	GGCC	1 cut(s)	80
BspCNI	CTCAG	1 cut(s)	382
BspEI	TCCGGA	1 cut(s)	149
BspFNI	CGCG	2 cut(s)	491, 493
BspHI	TCATGA	1 cut(s)	279
BspLI	GGNNCC	2 cut(s)	59, 447
BspPI	GGATC	2 cut(s)	440, 453
BspT107I	GGYRCC	1 cut(s)	57
BsrDI	GCAATG	1 cut(s)	474
BsrI	ACTGG	1 cut(s)	449
BssECI	CCNNGG	1 cut(s)	257
BssHII	GCGCGC	2 cut(s)	489, 491
BssMI	GATC	2 cut(s)	17, 445
BssNI	GRCGYC	1 cut(s)	58
Bst2UI	CCWGG	1 cut(s)	259
Bst6I	CTCTTC	1 cut(s)	88
BstACI	GRCGYC	1 cut(s)	58
BstC8I	GCNNGC	4 cut(s)	291, 487, 491, 493
BstDEI	CTNAG	2 cut(s)	390, 534
BstF5I	GGATG	2 cut(s)	242, 252
BstFNI	CGCG	2 cut(s)	491, 493
BstH2I	RGCGCY	1 cut(s)	61
BstHHI	GCGC	5 cut(s)	60, 97, 491, 493, 495
BstKTI	GATC	2 cut(s)	20, 448
BstMBI	GATC	2 cut(s)	17, 445
BstMWI	GCNNNNNNNGC	1 cut(s)	499
BstNI	CCWGG	1 cut(s)	259
BstNSI	RCATGY	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	257
BstSFI	CTRYAG	1 cut(s)	13
BstUI	CGCG	2 cut(s)	491, 493
BstV1I	GCAGC	2 cut(s)	24, 34
BstV2I	GAAGAC	1 cut(s)	500
BstX2I	RGATCY	2 cut(s)	17, 445
BstXI	CCANNNNNNTGG	1 cut(s)	233
BstYI	RGATCY	2 cut(s)	17, 445
BsuRI	GGCC	1 cut(s)	80
BtsCI	GGATG	2 cut(s)	242, 252
BtsI	GCAGTG	1 cut(s)	414
BtsIMutI	CAGTG	1 cut(s)	414
Cac8I	GCNNGC	4 cut(s)	291, 487, 491, 493
CciI	TCATGA	1 cut(s)	279
CfoI	GCGC	5 cut(s)	60, 97, 491, 493, 495
Cfr13I	GGNCC	1 cut(s)	313
Csp6I	GTAC	1 cut(s)	452
CviAII	CATG	4 cut(s)	227, 280, 290, 521
CviJI	RGCY	9 cut(s)	5, 12, 47, 80, 119, 147, 461, 485, 502
CviKI_1	RGCY	9 cut(s)	5, 12, 47, 80, 119, 147, 461, 485, 502
CviQI	GTAC	1 cut(s)	452
DdeI	CTNAG	2 cut(s)	390, 534
DinI	GGCGCC	1 cut(s)	59
DpnI	GATC	2 cut(s)	19, 447
DpnII	GATC	2 cut(s)	17, 445
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
Eco47I	GGWCC	1 cut(s)	313
Eco57I	CTGAAG	2 cut(s)	405, 483
EcoRII	CCWGG	1 cut(s)	257
EgeI	GGCGCC	1 cut(s)	59
EheI	GGCGCC	1 cut(s)	59
FaeI	CATG	4 cut(s)	230, 283, 293, 524
FaiI	YATR	9 cut(s)	9, 93, 228, 266, 281, 291, 328, 441, 522
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	4 cut(s)	226, 279, 289, 520
FauI	CCCGC	1 cut(s)	230
Fnu4HI	GCNGC	2 cut(s)	38, 48
FokI	GGATG	2 cut(s)	229, 239
Fsp4HI	GCNGC	2 cut(s)	38, 48
FspI	TGCGCA	1 cut(s)	96
GlaI	GCGC	5 cut(s)	59, 96, 490, 492, 494
GluI	GCNGC	2 cut(s)	38, 48
GsaI	CCCAGC	1 cut(s)	54
GsuI	CTGGAG	1 cut(s)	279
HaeII	RGCGCY	1 cut(s)	61
HaeIII	GGCC	1 cut(s)	80
HapII	CCGG	1 cut(s)	150
HhaI	GCGC	5 cut(s)	60, 97, 491, 493, 495
Hin1I	GRCGYC	1 cut(s)	58
Hin1II	CATG	4 cut(s)	230, 283, 293, 524
Hin6I	GCGC	5 cut(s)	58, 95, 489, 491, 493
HinP1I	GCGC	5 cut(s)	58, 95, 489, 491, 493
HinfI	GANTC	3 cut(s)	153, 276, 404
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	1 cut(s)	320
Hpy166II	GTNNAC	1 cut(s)	240
Hpy188I	TCNGA	2 cut(s)	172, 317
Hpy188III	TCNNGA	3 cut(s)	150, 280, 296
Hpy8I	GTNNAC	1 cut(s)	240
Hpy99I	CGWCG	2 cut(s)	91, 483
HpyAV	CCTTC	2 cut(s)	99, 451
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	1 cut(s)	289
HpyF10VI	GCNNNNNNNGC	1 cut(s)	499
HpyF3I	CTNAG	2 cut(s)	390, 534
HpySE526I	ACGT	1 cut(s)	69
Hsp92I	GRCGYC	1 cut(s)	58
Hsp92II	CATG	4 cut(s)	230, 283, 293, 524
HspAI	GCGC	5 cut(s)	58, 95, 489, 491, 493
KasI	GGCGCC	1 cut(s)	57
Kpn2I	TCCGGA	1 cut(s)	149
Kzo9I	GATC	2 cut(s)	17, 445
LmnI	GCTCC	2 cut(s)	152, 298
LpnPI	CCDG	9 cut(s)	36, 153, 163, 216, 244, 271, 291, 309, 462
Lsp1109I	GCAGC	2 cut(s)	24, 34
LweI	GCATC	3 cut(s)	328, 330, 376
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	1 cut(s)	367
MalI	GATC	2 cut(s)	19, 447
MboI	GATC	2 cut(s)	17, 445
MboII	GAAGA	5 cut(s)	75, 137, 143, 500, 536
MflI	RGATCY	2 cut(s)	17, 445
MluCI	AATT	2 cut(s)	111, 283
Mly113I	GGCGCC	1 cut(s)	58
MlyI	GAGTC	1 cut(s)	413
MnlI	CCTC	5 cut(s)	91, 176, 188, 221, 304
MroI	TCCGGA	1 cut(s)	149
MseI	TTAA	2 cut(s)	216, 270
MslI	CAYNNNNRTG	1 cut(s)	231
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	1 cut(s)	259
MvaI	CCWGG	1 cut(s)	259
MvnI	CGCG	2 cut(s)	491, 493
MwoI	GCNNNNNNNGC	1 cut(s)	499
NarI	GGCGCC	1 cut(s)	58
NdeII	GATC	2 cut(s)	17, 445
NlaIII	CATG	4 cut(s)	230, 283, 293, 524
NlaIV	GGNNCC	2 cut(s)	59, 447
NmuCI	GTSAC	1 cut(s)	367
NsbI	TGCGCA	1 cut(s)	96
NspI	RCATGY	1 cut(s)	293
PaeI	GCATGC	1 cut(s)	293
PagI	TCATGA	1 cut(s)	279
PauI	GCGCGC	2 cut(s)	489, 491
PfeI	GAWTC	2 cut(s)	153, 276
PkrI	GCNGC	2 cut(s)	39, 49
PleI	GAGTC	1 cut(s)	412
PluTI	GGCGCC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	412
Psp6I	CCWGG	1 cut(s)	257
PspFI	CCCAGC	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	257
PspN4I	GGNNCC	2 cut(s)	59, 447
PspPI	GGNCC	1 cut(s)	313
PsuI	RGATCY	2 cut(s)	17, 445
PteI	GCGCGC	2 cut(s)	489, 491
RsaI	GTAC	1 cut(s)	453
RsaNI	GTAC	1 cut(s)	452
RseI	CAYNNNNRTG	1 cut(s)	231
SaqAI	TTAA	2 cut(s)	216, 270
SatI	GCNGC	2 cut(s)	38, 48
Sau3AI	GATC	2 cut(s)	17, 445
Sau96I	GGNCC	1 cut(s)	313
SchI	GAGTC	1 cut(s)	413
ScrFI	CCNGG	1 cut(s)	259
SetI	ASST	6 cut(s)	49, 72, 121, 149, 315, 487
SfaNI	GCATC	3 cut(s)	328, 330, 376
SfcI	CTRYAG	1 cut(s)	13
SfoI	GGCGCC	1 cut(s)	59
SinI	GGWCC	1 cut(s)	313
SmiMI	CAYNNNNRTG	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
SphI	GCATGC	1 cut(s)	293
Sse9I	AATT	2 cut(s)	111, 283
SsiI	CCGC	1 cut(s)	223
SspDI	GGCGCC	1 cut(s)	57
StyD4I	CCNGG	1 cut(s)	257
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	2 cut(s)	274, 481
TasI	AATT	2 cut(s)	111, 283
TatI	WGTACW	1 cut(s)	451
TfiI	GAWTC	2 cut(s)	153, 276
Tru1I	TTAA	2 cut(s)	216, 270
Tru9I	TTAA	2 cut(s)	216, 270
TscAI	CASTG	1 cut(s)	421
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	2 cut(s)	37, 47
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	6 cut(s)	138, 144, 243, 296, 500, 537
TspGWI	ACGGA	1 cut(s)	393
TspRI	CASTG	1 cut(s)	421
VpaK11BI	GGWCC	1 cut(s)	313
XapI	RAATTY	1 cut(s)	283
XceI	RCATGY	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.