Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0015353

Physical Location & Seq

Genomic Coordinates Reverse (-)

571695 .. 574021

Gene Structure 2327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G000280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCGCATCCTTGTAGATCATGTTTATTGAGGTCGCTGCGTGTAGCTGCTGCGTTTCAAAGTTCAGCGTGGCGCCGTTCCTATGCCAAGTTGGCCTCTTCGTCTTGTGCGCAAGGGAGGAGGGAGAAACAGGTTGAAGTGGAAGCAGATGAAGATGTAGAAGATTTCGCTGTGAGCTCTGGAATCAGCAGACCCCTCTCTGAAATCCTCAAGCAAATCAACAAGAAAGTCCCTGATACCCTCGTCAAATCCCGCCATGAAAATGGGTTTACATCCAAATACATCCCCTGGCACGTTGTTAATCGAATTATGAACTTGCATGCTCCAGAATGGTCTGGTGAGGTCCGAAGCATCACATACTCTGCTGATGCCAAGTCTGTTTCTGTTGTTTATCGTGTCACGCTCTATGGAACTGATGCTGAGATTTTTAGGGAGTCTATAGGGACTGCTTCGGTAGATGACACAAGTTATGGGGATCCAGTACAGAAGGCTGAAGCAATGGCATTTCGTCGAGCTTGTGCGCGCTTTGGGCTTGGTCTTCATCTTTACCATGAAGATTTGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0033554 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0050897 GO:0051716 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rad52_Rad22

Protein Analysis

188

Amino Acids

21.0

Weight (kDa)

8.34

Isoelectric Point (pI)

54.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71310 AT1G71310 AT1G71310
fragaria_vesca	FvH4_2g00170
malus_domestica	MD05G1000800.v1.1
prunus_persica	Prupe.8G001500_v2.0.a1
pyrus_communis	pycom215g00020
rosa_chinensis	RchiOBHm_Chr6g0249441
rosa_laevigata	RLG00000015579
rosa_multiflora	Rmu_ssc0000459.1_g000022
rosa_roxburghii	Rroxscaffold_7G00217710
rosa_rugosa	Rorug05G0492500
rosa_samantha	Rh6AG002200 Rh6CG001400 Rh6DG001400
rosa_wichuraiana	Rw6G000280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	111
AccB1I	GGYRCC	1 cut(s)	72
AccII	CGCG	1 cut(s)	523
AciI	CCGC	1 cut(s)	253
AclWI	GGATC	2 cut(s)	470, 483
AcuI	CTGAAG	1 cut(s)	513
AcyI	GRCGYC	1 cut(s)	73
AfaI	GTAC	1 cut(s)	483
AgsI	TTSAA	2 cut(s)	59, 137
AjnI	CCWGG	1 cut(s)	287
AluBI	AGCT	3 cut(s)	47, 177, 515
AluI	AGCT	3 cut(s)	47, 177, 515
Alw21I	GWGCWC	1 cut(s)	179
AlwI	GGATC	2 cut(s)	470, 483
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	3 cut(s)	37, 47, 50
AspLEI	GCGC	5 cut(s)	7, 75, 112, 523, 525
AspS9I	GGNCC	1 cut(s)	343
AsuHPI	GGTGA	1 cut(s)	350
AvaII	GGWCC	1 cut(s)	343
BaeI	ACNNNNGTAYC	2 cut(s)	228, 261
BamHI	GGATCC	1 cut(s)	475
BanI	GGYRCC	1 cut(s)	72
BanII	GRGCYC	1 cut(s)	179
BbsI	GAAGAC	1 cut(s)	530
Bbv12I	GWGCWC	1 cut(s)	179
BbvI	GCAGC	3 cut(s)	24, 34, 37
BceAI	ACGGC	1 cut(s)	60
BciT130I	CCWGG	1 cut(s)	289
BfmI	CTRYAG	1 cut(s)	438
BfoI	RGCGCY	1 cut(s)	76
BglI	GCCNNNNNGGC	1 cut(s)	92
BisI	GCNGC	3 cut(s)	38, 48, 51
BlsI	GCNGC	3 cut(s)	39, 49, 52
Bme1390I	CCNGG	1 cut(s)	289
Bme18I	GGWCC	1 cut(s)	343
BmgT120I	GGNCC	1 cut(s)	343
BmiI	GGNNCC	2 cut(s)	74, 477
BmrFI	CCNGG	1 cut(s)	289
BmsI	GCATC	4 cut(s)	16, 358, 360, 406
BpiI	GAAGAC	1 cut(s)	530
BpmI	CTGGAG	1 cut(s)	309
BpuEI	CTTGAG	1 cut(s)	194
BsaHI	GRCGYC	1 cut(s)	73
BsaJI	CCNNGG	1 cut(s)	287
Bse1I	ACTGG	1 cut(s)	479
Bse3DI	GCAATG	1 cut(s)	504
BseBI	CCWGG	1 cut(s)	289
BseDI	CCNNGG	1 cut(s)	287
BseGI	GGATG	3 cut(s)	7, 272, 282
BseMI	GCAATG	1 cut(s)	504
BseMII	CTCAG	1 cut(s)	411
BseNI	ACTGG	1 cut(s)	479
BsePI	GCGCGC	1 cut(s)	521
BseRI	GAGGAG	1 cut(s)	133
BseXI	GCAGC	3 cut(s)	24, 34, 37
Bsh1236I	CGCG	1 cut(s)	523
BshFI	GGCC	1 cut(s)	95
BshNI	GGYRCC	1 cut(s)	72
BsiHKAI	GWGCWC	1 cut(s)	179
BslFI	GGGAC	2 cut(s)	215, 457
BsmFI	GGGAC	2 cut(s)	215, 457
BsnI	GGCC	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	179
Bsp143I	GATC	2 cut(s)	17, 475
BspACI	CCGC	1 cut(s)	253
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	1 cut(s)	412
BspFNI	CGCG	1 cut(s)	523
BspLI	GGNNCC	2 cut(s)	74, 477
BspPI	GGATC	2 cut(s)	470, 483
BspT107I	GGYRCC	1 cut(s)	72
BsrDI	GCAATG	1 cut(s)	504
BsrI	ACTGG	1 cut(s)	479
BssECI	CCNNGG	1 cut(s)	287
BssHII	GCGCGC	1 cut(s)	521
BssMI	GATC	2 cut(s)	17, 475
BssNI	GRCGYC	1 cut(s)	73
Bst2UI	CCWGG	1 cut(s)	289
Bst6I	CTCTTC	1 cut(s)	103
BstACI	GRCGYC	1 cut(s)	73
BstC8I	GCNNGC	2 cut(s)	321, 523
BstDEI	CTNAG	2 cut(s)	420, 564
BstF5I	GGATG	3 cut(s)	7, 272, 282
BstFNI	CGCG	1 cut(s)	523
BstH2I	RGCGCY	1 cut(s)	76
BstHHI	GCGC	5 cut(s)	7, 75, 112, 523, 525
BstKTI	GATC	2 cut(s)	20, 478
BstMBI	GATC	2 cut(s)	17, 475
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 529
BstNI	CCWGG	1 cut(s)	289
BstNSI	RCATGY	1 cut(s)	323
BstSCI	CCNGG	1 cut(s)	287
BstSFI	CTRYAG	1 cut(s)	438
BstUI	CGCG	1 cut(s)	523
BstV1I	GCAGC	3 cut(s)	24, 34, 37
BstV2I	GAAGAC	1 cut(s)	530
BstX2I	RGATCY	1 cut(s)	475
BstXI	CCANNNNNNTGG	1 cut(s)	263
BstYI	RGATCY	1 cut(s)	475
BsuRI	GGCC	1 cut(s)	95
BtsCI	GGATG	3 cut(s)	7, 272, 282
Cac8I	GCNNGC	2 cut(s)	321, 523
CfoI	GCGC	5 cut(s)	7, 75, 112, 523, 525
Cfr13I	GGNCC	1 cut(s)	343
Csp6I	GTAC	1 cut(s)	482
CviAII	CATG	4 cut(s)	21, 257, 320, 551
CviJI	RGCY	6 cut(s)	47, 95, 177, 491, 515, 532
CviKI_1	RGCY	6 cut(s)	47, 95, 177, 491, 515, 532
CviQI	GTAC	1 cut(s)	482
DdeI	CTNAG	2 cut(s)	420, 564
DinI	GGCGCC	1 cut(s)	74
DpnI	GATC	2 cut(s)	19, 477
DpnII	GATC	2 cut(s)	17, 475
Eam1104I	CTCTTC	1 cut(s)	103
EarI	CTCTTC	1 cut(s)	103
Ecl136II	GAGCTC	1 cut(s)	177
Eco24I	GRGCYC	1 cut(s)	179
Eco47I	GGWCC	1 cut(s)	343
Eco53kI	GAGCTC	1 cut(s)	177
Eco57I	CTGAAG	1 cut(s)	513
EcoICRI	GAGCTC	1 cut(s)	177
EcoRII	CCWGG	1 cut(s)	287
EcoT38I	GRGCYC	1 cut(s)	179
EgeI	GGCGCC	1 cut(s)	74
EheI	GGCGCC	1 cut(s)	74
FaeI	CATG	4 cut(s)	24, 260, 323, 554
FaqI	GGGAC	2 cut(s)	215, 457
FatI	CATG	4 cut(s)	20, 256, 319, 550
FauI	CCCGC	1 cut(s)	260
Fnu4HI	GCNGC	3 cut(s)	38, 48, 51
FokI	GGATG	2 cut(s)	259, 269
FriOI	GRGCYC	1 cut(s)	179
Fsp4HI	GCNGC	3 cut(s)	38, 48, 51
FspI	TGCGCA	1 cut(s)	111
GlaI	GCGC	5 cut(s)	6, 74, 111, 522, 524
GluI	GCNGC	3 cut(s)	38, 48, 51
GsuI	CTGGAG	1 cut(s)	309
HaeII	RGCGCY	1 cut(s)	76
HaeIII	GGCC	1 cut(s)	95
HhaI	GCGC	5 cut(s)	7, 75, 112, 523, 525
Hin1I	GRCGYC	1 cut(s)	73
Hin1II	CATG	4 cut(s)	24, 260, 323, 554
Hin6I	GCGC	5 cut(s)	5, 73, 110, 521, 523
HinP1I	GCGC	5 cut(s)	5, 73, 110, 521, 523
HinfI	GANTC	2 cut(s)	183, 434
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	1 cut(s)	270
Hpy188I	TCNGA	2 cut(s)	202, 347
Hpy188III	TCNNGA	2 cut(s)	180, 326
Hpy8I	GTNNAC	1 cut(s)	270
Hpy99I	CGWCG	1 cut(s)	513
HpyAV	CCTTC	1 cut(s)	481
HpyCH4IV	ACGT	1 cut(s)	294
HpyCH4V	TGCA	1 cut(s)	319
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 529
HpyF3I	CTNAG	2 cut(s)	420, 564
HpySE526I	ACGT	1 cut(s)	294
Hsp92I	GRCGYC	1 cut(s)	73
Hsp92II	CATG	4 cut(s)	24, 260, 323, 554
HspAI	GCGC	5 cut(s)	5, 73, 110, 521, 523
KasI	GGCGCC	1 cut(s)	72
Kzo9I	GATC	2 cut(s)	17, 475
LmnI	GCTCC	1 cut(s)	328
LpnPI	CCDG	8 cut(s)	116, 165, 246, 274, 301, 321, 339, 492
Lsp1109I	GCAGC	3 cut(s)	24, 34, 37
LweI	GCATC	4 cut(s)	16, 358, 360, 406
MaeII	ACGT	1 cut(s)	294
MaeIII	GTNAC	1 cut(s)	397
MalI	GATC	2 cut(s)	19, 477
MboI	GATC	2 cut(s)	17, 475
MboII	GAAGA	5 cut(s)	90, 164, 173, 530, 566
MflI	RGATCY	1 cut(s)	475
MhlI	GDGCHC	1 cut(s)	179
MluCI	AATT	1 cut(s)	306
Mly113I	GGCGCC	1 cut(s)	73
MlyI	GAGTC	1 cut(s)	443
MnlI	CCTC	8 cut(s)	24, 106, 111, 114, 206, 218, 251, 334
MseI	TTAA	1 cut(s)	300
MslI	CAYNNNNRTG	1 cut(s)	261
MspR9I	CCNGG	1 cut(s)	289
MvaI	CCWGG	1 cut(s)	289
MvnI	CGCG	1 cut(s)	523
MwoI	GCNNNNNNNGC	2 cut(s)	92, 529
NarI	GGCGCC	1 cut(s)	73
NdeII	GATC	2 cut(s)	17, 475
NlaIII	CATG	4 cut(s)	24, 260, 323, 554
NlaIV	GGNNCC	2 cut(s)	74, 477
NmuCI	GTSAC	1 cut(s)	397
NsbI	TGCGCA	1 cut(s)	111
NspI	RCATGY	1 cut(s)	323
PaeI	GCATGC	1 cut(s)	323
PauI	GCGCGC	1 cut(s)	521
PfeI	GAWTC	1 cut(s)	183
PkrI	GCNGC	3 cut(s)	39, 49, 52
PleI	GAGTC	1 cut(s)	442
PluTI	GGCGCC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	442
Psp124BI	GAGCTC	1 cut(s)	179
Psp6I	CCWGG	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	287
PspN4I	GGNNCC	2 cut(s)	74, 477
PspPI	GGNCC	1 cut(s)	343
PsuI	RGATCY	1 cut(s)	475
PteI	GCGCGC	1 cut(s)	521
RsaI	GTAC	1 cut(s)	483
RsaNI	GTAC	1 cut(s)	482
RseI	CAYNNNNRTG	1 cut(s)	261
SacI	GAGCTC	1 cut(s)	179
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	3 cut(s)	38, 48, 51
Sau3AI	GATC	2 cut(s)	17, 475
Sau96I	GGNCC	1 cut(s)	343
SchI	GAGTC	1 cut(s)	443
ScrFI	CCNGG	1 cut(s)	289
SduI	GDGCHC	1 cut(s)	179
SetI	ASST	7 cut(s)	35, 49, 135, 179, 297, 345, 517
SfaNI	GCATC	4 cut(s)	16, 358, 360, 406
SfcI	CTRYAG	1 cut(s)	438
SfoI	GGCGCC	1 cut(s)	74
SinI	GGWCC	1 cut(s)	343
SmiMI	CAYNNNNRTG	1 cut(s)	261
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
SphI	GCATGC	1 cut(s)	323
Sse9I	AATT	1 cut(s)	306
SsiI	CCGC	1 cut(s)	253
SspDI	GGCGCC	1 cut(s)	72
SstI	GAGCTC	1 cut(s)	179
StyD4I	CCNGG	1 cut(s)	287
TaiI	ACGT	1 cut(s)	297
TaqI	TCGA	2 cut(s)	304, 511
TasI	AATT	1 cut(s)	306
TatI	WGTACW	1 cut(s)	481
TfiI	GAWTC	1 cut(s)	183
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TseFI	GTSAC	1 cut(s)	397
TseI	GCWGC	3 cut(s)	37, 47, 50
Tsp45I	GTSAC	1 cut(s)	397
TspDTI	ATGAA	5 cut(s)	165, 273, 326, 530, 567
VpaK11BI	GGWCC	1 cut(s)	343
XceI	RCATGY	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.