AT1G71340

Glycerophosphoryl diester phosphodiesterase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012249
Physical Location & Seq
Reverse (-)
26885170 .. 26888364
3195 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G71340.1

Sequence Viewer

Length: 987 bp
ATGGCGATTTTTGAATGGCGGCACAGAAGACGGCCATTCGACGGCGGAGGAACTCGTCGCCGTCGTTTCTTCAGCCCATTGTATTCGAGAAATTTCAAGAGAACGATTCTCTTCGCTGTGATTTTCTTAGCTATCTTCCCTCCTCTCTACTTCCATTTCAAGCTCCGACGAATTCGTCAGATTGTCGCGCAAAAGTGCGATTGGCTTCACCATCCTCCACTTGTCTGTGCTCACGGCGGCGATTCCACCCTCGCTTTCCCAAACACTATGGACGCTTACAGTTTCGCTATACGTTCTCGAGTTGATTGCATTGAAGTCGATGTTTCTCGTTCCTCCGATGGTGTTTTATTCGCTCTTCACAACAGGGATCTGCAGCGTATTGCTCGTAACTCTTCTGTTCAAGTTGGAGATCTGAGTATGAAACAGATCAAGGAACTCGATGTCTCGGAGATTGTTAAAGGAACCTTGGGAAGTAGTAGGATTCCTACTCTTGAAGAGGCTTTAGCGTTGATATCGAATTCAGTCCGGAAAGTGATCCTTGATGCCAAAGTTGGACCGCCAATGTATGAAAAGGGGTTAGCACAAGACATCCTTTCTATTATTGAGAGAGCGCAGTGCAATAATTGCATCGTATGGGCCAAAAGCGACACTTTGGCTAGGGACATAATTAGACGAGCACCAGATACTATGGTGGGATACATTGTGATGGTAGATCCTTTGACTGGGGCGAGAAACAGCCTGCTGAGAATGAAGGGAGCTAGGGTTGTGGGAGTTTATCATCCCTTGATCGATGAAGAATTAGTTAGAGTTGTCCGTCGGAGAAACAAAGAGGTGTATGCATGGACTGTGGATGATGCTGATCCCATGAAAAGGATGCTTCACTTAGGTGTGGATGCTGTTGTGACGAGCGATCCATCTATGTTTCAGGGTCTCATGGAAGATCTTAGAACTGAGTGTCTTGAAGAAGGTTTTTCAATACGGACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GDPD

Protein Analysis

328

Amino Acids

37.37

Weight (kDa)

9.46

Isoelectric Point (pI)

50.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDPD PF03009 80 - 305 5.5e-26 Glycerophosphoryl diester phosphodiesterase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 174
AccII CGCG 1 cut(s) 188
AccIII TCCGGA 1 cut(s) 525
AciI CCGC 4 cut(s) 19, 45, 237, 557
AclWI GGATC 5 cut(s) 375, 529, 707, 854, 905
AcoI YGGCCR 1 cut(s) 32
AcsI RAATTY 3 cut(s) 91, 171, 517
AcuI CTGAAG 1 cut(s) 55
AfiI CCNNNNNNNGG 3 cut(s) 41, 722, 870
AgsI TTSAA 8 cut(s) 14, 97, 160, 314, 401, 494, 962, 975
AjiI CACGTC 1 cut(s) 984
AleI CACNNNNGTG 1 cut(s) 885
AluBI AGCT 3 cut(s) 131, 163, 758
AluI AGCT 3 cut(s) 131, 163, 758
Alw21I GWGCWC 2 cut(s) 232, 679
Alw26I GTCTC 2 cut(s) 448, 935
AlwI GGATC 5 cut(s) 375, 529, 707, 854, 905
Ama87I CYCGRG 1 cut(s) 297
Aor13HI TCCGGA 1 cut(s) 525
AoxI GGCC 2 cut(s) 32, 636
ApeKI GCWGC 1 cut(s) 373
ApoI RAATTY 3 cut(s) 91, 171, 517
AspLEI GCGC 2 cut(s) 190, 613
AspS9I GGNCC 2 cut(s) 554, 636
AsuHPI GGTGA 1 cut(s) 200
AvaI CYCGRG 1 cut(s) 297
AvaII GGWCC 1 cut(s) 554
BaeI ACNNNNGTAYC 2 cut(s) 675, 708
BbsI GAAGAC 1 cut(s) 34
Bbv12I GWGCWC 2 cut(s) 232, 679
BbvI GCAGC 1 cut(s) 385
BccI CCATC 4 cut(s) 219, 332, 700, 922
BceAI ACGGC 4 cut(s) 45, 47, 58, 250
BcgI CGANNNNNNTGC 4 cut(s) 288, 298, 322, 332
BciVI GTATCC 1 cut(s) 689
BcoDI GTCTC 2 cut(s) 448, 935
BfaI CTAG 2 cut(s) 657, 759
BfmI CTRYAG 1 cut(s) 371
BfuI GTATCC 1 cut(s) 689
BglII AGATCT 2 cut(s) 409, 940
BisI GCNGC 3 cut(s) 20, 238, 374
BlsI GCNGC 3 cut(s) 21, 239, 375
Bme18I GGWCC 1 cut(s) 554
BmeT110I CYCGRG 1 cut(s) 297
BmgBI CACGTC 1 cut(s) 984
BmgT120I GGNCC 2 cut(s) 554, 636
BmiI GGNNCC 1 cut(s) 463
BmrI ACTGGG 1 cut(s) 732
BmsI GCATC 5 cut(s) 532, 636, 844, 864, 883
BmuI ACTGGG 1 cut(s) 732
BpiI GAAGAC 1 cut(s) 34
Bsa29I ATCGAT 1 cut(s) 789
BsaBI GATNNNNATC 1 cut(s) 858
BsaI GGTCTC 1 cut(s) 935
BsaJI CCNNGG 1 cut(s) 465
BsaWI WCCGGW 1 cut(s) 525
BsaXI ACNNNNNCTCC 2 cut(s) 747, 777
Bsc4I CCNNNNNNNGG 3 cut(s) 41, 722, 870
Bse1I ACTGG 1 cut(s) 727
Bse8I GATNNNNATC 1 cut(s) 858
BseAI TCCGGA 1 cut(s) 525
BseCI ATCGAT 1 cut(s) 789
BseDI CCNNGG 1 cut(s) 465
BseGI GGATG 6 cut(s) 211, 588, 778, 856, 879, 898
BseJI GATNNNNATC 1 cut(s) 858
BseLI CCNNNNNNNGG 3 cut(s) 41, 722, 870
BseMII CTCAG 3 cut(s) 404, 734, 942
BseNI ACTGG 1 cut(s) 727
BseRI GAGGAG 1 cut(s) 132
BseXI GCAGC 1 cut(s) 385
Bsh1236I CGCG 1 cut(s) 188
BshFI GGCC 2 cut(s) 34, 638
BshVI ATCGAT 1 cut(s) 789
BsiHKAI GWGCWC 2 cut(s) 232, 679
BsiHKCI CYCGRG 1 cut(s) 297
BsiSI CCGG 1 cut(s) 526
BslFI GGGAC 1 cut(s) 674
BslI CCNNNNNNNGG 3 cut(s) 41, 722, 870
BsmAI GTCTC 2 cut(s) 448, 935
BsmFI GGGAC 1 cut(s) 674
BsnI GGCC 2 cut(s) 34, 638
Bso31I GGTCTC 1 cut(s) 935
BsoBI CYCGRG 1 cut(s) 297
Bsp1286I GDGCHC 2 cut(s) 232, 679
Bsp13I TCCGGA 1 cut(s) 525
Bsp143I GATC 9 cut(s) 367, 409, 426, 534, 712, 786, 859, 910, 940
BspACI CCGC 4 cut(s) 19, 45, 237, 557
BspANI GGCC 2 cut(s) 34, 638
BspCNI CTCAG 3 cut(s) 405, 735, 943
BspDI ATCGAT 1 cut(s) 789
BspEI TCCGGA 1 cut(s) 525
BspFNI CGCG 1 cut(s) 188
BspLI GGNNCC 1 cut(s) 463
BspMAI CTGCAG 1 cut(s) 375
BspPI GGATC 5 cut(s) 375, 529, 707, 854, 905
BspQI GCTCTTC 1 cut(s) 360
BspTNI GGTCTC 1 cut(s) 935
BsrI ACTGG 1 cut(s) 727
BssECI CCNNGG 1 cut(s) 465
BssMI GATC 9 cut(s) 367, 409, 426, 534, 712, 786, 859, 910, 940
BssT1I CCWWGG 1 cut(s) 465
Bst4CI ACNGT 2 cut(s) 281, 847
Bst6I CTCTTC 4 cut(s) 116, 360, 397, 489
BstAPI GCANNNNNTGC 1 cut(s) 624
BstC8I GCNNGC 1 cut(s) 740
BstDEI CTNAG 6 cut(s) 127, 413, 743, 883, 944, 951
BstF5I GGATG 6 cut(s) 211, 588, 778, 856, 879, 898
BstFNI CGCG 1 cut(s) 188
BstHHI GCGC 2 cut(s) 190, 613
BstKTI GATC 9 cut(s) 370, 412, 429, 537, 715, 789, 862, 913, 943
BstMAI GTCTC 2 cut(s) 448, 935
BstMBI GATC 9 cut(s) 367, 409, 426, 534, 712, 786, 859, 910, 940
BstMWI GCNNNNNNNGC 1 cut(s) 624
BstSFI CTRYAG 1 cut(s) 371
BstUI CGCG 1 cut(s) 188
BstV1I GCAGC 1 cut(s) 385
BstV2I GAAGAC 1 cut(s) 34
BstX2I RGATCY 4 cut(s) 367, 409, 712, 940
BstYI RGATCY 4 cut(s) 367, 409, 712, 940
Bsu15I ATCGAT 1 cut(s) 789
BsuI GTATCC 1 cut(s) 689
BsuRI GGCC 2 cut(s) 34, 638
BsuTUI ATCGAT 1 cut(s) 789
BtrI CACGTC 1 cut(s) 984
BtsCI GGATG 6 cut(s) 211, 588, 778, 856, 879, 898
BtsI GCAGTG 1 cut(s) 620
BtsIMutI CAGTG 1 cut(s) 620
Cac8I GCNNGC 1 cut(s) 740
CfoI GCGC 2 cut(s) 190, 613
Cfr13I GGNCC 2 cut(s) 554, 636
ClaI ATCGAT 1 cut(s) 789
CseI GACGC 1 cut(s) 281
CviAII CATG 3 cut(s) 840, 865, 934
DdeI CTNAG 6 cut(s) 127, 413, 743, 883, 944, 951
DpnI GATC 9 cut(s) 369, 411, 428, 536, 714, 788, 861, 912, 942
DpnII GATC 9 cut(s) 367, 409, 426, 534, 712, 786, 859, 910, 940
DrdI GACNNNNNNGTC 1 cut(s) 174
DseDI GACNNNNNNGTC 1 cut(s) 174
EaeI YGGCCR 1 cut(s) 32
Eam1104I CTCTTC 4 cut(s) 116, 360, 397, 489
EarI CTCTTC 4 cut(s) 116, 360, 397, 489
EciI GGCGGA 1 cut(s) 60
Eco130I CCWWGG 1 cut(s) 465
Eco31I GGTCTC 1 cut(s) 935
Eco32I GATATC 1 cut(s) 513
Eco47I GGWCC 1 cut(s) 554
Eco57I CTGAAG 1 cut(s) 55
Eco88I CYCGRG 1 cut(s) 297
EcoRI GAATTC 2 cut(s) 171, 517
EcoRV GATATC 1 cut(s) 513
EcoT14I CCWWGG 1 cut(s) 465
EcoT22I ATGCAT 1 cut(s) 841
ErhI CCWWGG 1 cut(s) 465
FaeI CATG 3 cut(s) 843, 868, 937
FalI AAGNNNNNCTT 6 cut(s) 522, 554, 576, 608, 634, 666
FaqI GGGAC 1 cut(s) 674
FatI CATG 3 cut(s) 839, 864, 933
Fnu4HI GCNGC 3 cut(s) 20, 238, 374
FokI GGATG 6 cut(s) 198, 575, 765, 863, 886, 905
Fsp4HI GCNGC 3 cut(s) 20, 238, 374
FspBI CTAG 2 cut(s) 657, 759
GlaI GCGC 2 cut(s) 189, 612
GluI GCNGC 3 cut(s) 20, 238, 374
HaeIII GGCC 2 cut(s) 34, 638
HapII CCGG 1 cut(s) 526
HgaI GACGC 1 cut(s) 281
HhaI GCGC 2 cut(s) 190, 613
Hin1II CATG 3 cut(s) 843, 868, 937
Hin6I GCGC 2 cut(s) 188, 611
HinP1I GCGC 2 cut(s) 188, 611
HinfI GANTC 3 cut(s) 106, 242, 481
HpaII CCGG 1 cut(s) 526
HphI GGTGA 1 cut(s) 200
Hpy188I TCNGA 6 cut(s) 167, 180, 337, 414, 448, 819
Hpy188III TCNNGA 6 cut(s) 87, 97, 297, 491, 526, 959
Hpy99I CGWCG 5 cut(s) 44, 60, 66, 171, 819
HpyAV CCTTC 2 cut(s) 745, 959
HpyCH4III ACNGT 2 cut(s) 281, 847
HpyCH4IV ACGT 2 cut(s) 292, 983
HpyCH4V TGCA 5 cut(s) 309, 373, 618, 627, 839
HpyF10VI GCNNNNNNNGC 1 cut(s) 624
HpyF3I CTNAG 6 cut(s) 127, 413, 743, 883, 944, 951
HpySE526I ACGT 2 cut(s) 292, 983
Hsp92II CATG 3 cut(s) 843, 868, 937
HspAI GCGC 2 cut(s) 188, 611
Kpn2I TCCGGA 1 cut(s) 525
Kzo9I GATC 9 cut(s) 367, 409, 426, 534, 712, 786, 859, 910, 940
LguI GCTCTTC 1 cut(s) 360
LmnI GCTCC 2 cut(s) 168, 755
LpnPI CCDG 6 cut(s) 349, 539, 693, 708, 752, 911
Lsp1109I GCAGC 1 cut(s) 385
LweI GCATC 5 cut(s) 532, 636, 844, 864, 883
MaeI CTAG 2 cut(s) 657, 759
MaeII ACGT 2 cut(s) 292, 983
MaeIII GTNAC 2 cut(s) 386, 901
MalI GATC 9 cut(s) 369, 411, 428, 536, 714, 788, 861, 912, 942
MboI GATC 9 cut(s) 367, 409, 426, 534, 712, 786, 859, 910, 940
MflI RGATCY 4 cut(s) 367, 409, 712, 940
MhlI GDGCHC 2 cut(s) 232, 679
MluCI AATT 6 cut(s) 91, 171, 517, 622, 666, 797
MmeI TCCRAC 4 cut(s) 190, 385, 532, 797
MnlI CCTC 8 cut(s) 41, 150, 153, 225, 260, 343, 490, 823
Mph1103I ATGCAT 1 cut(s) 841
MroI TCCGGA 1 cut(s) 525
MseI TTAA 1 cut(s) 456
MslI CAYNNNNRTG 2 cut(s) 704, 885
MspI CCGG 1 cut(s) 526
MvnI CGCG 1 cut(s) 188
MwoI GCNNNNNNNGC 1 cut(s) 624
NdeII GATC 9 cut(s) 367, 409, 426, 534, 712, 786, 859, 910, 940
NlaIII CATG 3 cut(s) 843, 868, 937
NlaIV GGNNCC 1 cut(s) 463
NmuCI GTSAC 1 cut(s) 901
NsiI ATGCAT 1 cut(s) 841
OliI CACNNNNGTG 1 cut(s) 885
PaeR7I CTCGAG 1 cut(s) 297
PciSI GCTCTTC 1 cut(s) 360
PcsI WCGNNNNNNNCGW 1 cut(s) 61
PfeI GAWTC 3 cut(s) 106, 242, 481
PkrI GCNGC 3 cut(s) 21, 239, 375
PspN4I GGNNCC 1 cut(s) 463
PspPI GGNCC 2 cut(s) 554, 636
PstI CTGCAG 1 cut(s) 375
PsuI RGATCY 4 cut(s) 367, 409, 712, 940
RseI CAYNNNNRTG 2 cut(s) 704, 885
SapI GCTCTTC 1 cut(s) 360
SaqAI TTAA 1 cut(s) 456
SatI GCNGC 3 cut(s) 20, 238, 374
Sau3AI GATC 9 cut(s) 367, 409, 426, 534, 712, 786, 859, 910, 940
Sau96I GGNCC 2 cut(s) 554, 636
SduI GDGCHC 2 cut(s) 232, 679
SetI ASST 9 cut(s) 133, 165, 295, 467, 760, 834, 889, 970, 986
SfaNI GCATC 5 cut(s) 532, 636, 844, 864, 883
SfcI CTRYAG 1 cut(s) 371
Sfr274I CTCGAG 1 cut(s) 297
SinI GGWCC 1 cut(s) 554
SlaI CTCGAG 1 cut(s) 297
SmiMI CAYNNNNRTG 2 cut(s) 704, 885
SmlI CTYRAG 1 cut(s) 297
SmoI CTYRAG 1 cut(s) 297
Sse9I AATT 6 cut(s) 91, 171, 517, 622, 666, 797
SsiI CCGC 4 cut(s) 19, 45, 237, 557
SspMI CTAG 2 cut(s) 657, 759
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 2 cut(s) 281, 847
TaiI ACGT 2 cut(s) 295, 986
TaqI TCGA 7 cut(s) 39, 86, 298, 318, 438, 515, 789
TasI AATT 6 cut(s) 91, 171, 517, 622, 666, 797
TauI GCSGC 2 cut(s) 22, 240
TfiI GAWTC 3 cut(s) 106, 242, 481
Tru1I TTAA 1 cut(s) 456
Tru9I TTAA 1 cut(s) 456
TscAI CASTG 1 cut(s) 620
TseFI GTSAC 1 cut(s) 901
TseI GCWGC 1 cut(s) 373
Tsp45I GTSAC 1 cut(s) 901
TspDTI ATGAA 5 cut(s) 434, 582, 764, 807, 881
TspGWI ACGGA 1 cut(s) 803
TspRI CASTG 1 cut(s) 620
VpaK11BI GGWCC 1 cut(s) 554
XapI RAATTY 3 cut(s) 91, 171, 517
XhoI CTCGAG 1 cut(s) 297
XspI CTAG 2 cut(s) 657, 759
Zsp2I ATGCAT 1 cut(s) 841
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.