FvH4_2g00320

Glycerophosphoryl diester phosphodiesterase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0012249
Physical Location & Seq
Reverse (-)
414400 .. 419064
4665 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g00320.t1

Sequence Viewer

Length: 975 bp
ATGGCGATGACAACGAGAGTGGGAAGGAGGCAACAGCAGCAGAGGAGGTCTGGATTGGGCAACATCAGGTTCTCTTCAAAGAGGCTCTTCCGTACCATTCTCATCAGCCTCGCCTTCCTCGCTCTCGTCCCTCCCCTTTTCTTCATCTTCAAGCTCAAGACCTTTCGTCTCACTCAGTTGCAGAAATGTGGTTGGCTAAATAGTCCTCCTCTTGTATGTGCACATGGCGGTGACTCAAGTTCGGCCTTTCCAAACACGATGGCTGCTTATCACTCTGCTCTTAATTCTCAAGTAGACTGCATTGAGATTGATGTTTCTCGTTCTTCAGATGGAGTACTGCTTGCGCTCCATGACAGGGATTTGCAGCGCATATCTGGAAACAATACTTCTAAGGTTGGACACTTCAGTATGAAAGAGATAAAACGTCTCGGTTCTAGTTATCAATCTGCAAAGTTCCACGATGCAAATATTCCTACAATTGAAGAGGCTCTGAAGTTGGTAGCAAGTTCAGTCAGGGAGGTGGTGTTAGATGTAAAAGTCGGGCCTCCATCGTTTGAAAAAGGTCTTGCAAAGGATGTATTTGATGTTGTTGAGAGGATCCAGTGTAGGAATTGCGTTGTATGGGCCAAAAGTGATAATATAGCAAGGGATGTGATCAGACTATCCTCAGATATCATGGTGGGGTACATTGTGATGATCGATCATTCAACCGGGGTGAGGACCAACTTACTGAGGATGAGAGATGCTCGTGTTGTTGGTGTGTACCATCCCTTGATTGATGAAAAGCTCGTGAGAATTCTGCATGGGAGAAAGAAGAAGGTATATGCGTGGACTGTTGACGATGCGAAGTCCATGGAAAATATGTTGTGGGAGCGCGTCGATGCCATTGTGACAAGCAACCCGAGTATGCTTCAAGGTCTAATGCAAGATACCAGAAGAGAGTGTCTTGAGCATGGGTTCTCATTATCAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GDPD

Protein Analysis

325

Amino Acids

36.49

Weight (kDa)

9.57

Isoelectric Point (pI)

42.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDPD PF03009 75 - 301 1.4e-24 Glycerophosphoryl diester phosphodiesterase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 294
AccII CGCG 1 cut(s) 876
AciI CCGC 1 cut(s) 228
AclWI GGATC 2 cut(s) 592, 605
AcsI RAATTY 1 cut(s) 795
AcuI CTGAAG 3 cut(s) 309, 388, 512
AfaI GTAC 4 cut(s) 94, 336, 686, 764
AfiI CCNNNNNNNGG 2 cut(s) 355, 717
AgsI TTSAA 6 cut(s) 78, 151, 482, 557, 708, 914
AhdI GACNNNNNGTC 1 cut(s) 165
AluBI AGCT 2 cut(s) 154, 787
AluI AGCT 2 cut(s) 154, 787
Alw21I GWGCWC 1 cut(s) 223
Alw26I GTCTC 2 cut(s) 173, 431
Alw44I GTGCAC 1 cut(s) 219
AlwI GGATC 2 cut(s) 592, 605
Ama87I CYCGRG 1 cut(s) 901
AoxI GGCC 3 cut(s) 243, 542, 624
ApaLI GTGCAC 1 cut(s) 219
ApeKI GCWGC 3 cut(s) 37, 263, 364
ApoI RAATTY 1 cut(s) 795
AspLEI GCGC 3 cut(s) 346, 369, 876
AspS9I GGNCC 3 cut(s) 542, 624, 720
AsuC2I CCSGG 1 cut(s) 712
AsuHPI GGTGA 2 cut(s) 242, 727
AvaI CYCGRG 1 cut(s) 901
AvaII GGWCC 1 cut(s) 720
BaeGI GKGCMC 1 cut(s) 223
BamHI GGATCC 1 cut(s) 597
BauI CACGAG 2 cut(s) 747, 788
Bbv12I GWGCWC 1 cut(s) 223
BbvI GCAGC 3 cut(s) 49, 250, 376
BccI CCATC 4 cut(s) 253, 323, 556, 774
BclI TGATCA 1 cut(s) 654
BcnI CCSGG 1 cut(s) 712
BcoDI GTCTC 2 cut(s) 173, 431
BfaI CTAG 1 cut(s) 435
BisI GCNGC 3 cut(s) 38, 264, 365
BlsI GCNGC 3 cut(s) 39, 265, 366
BmcAI AGTACT 1 cut(s) 336
Bme1390I CCNGG 1 cut(s) 712
Bme18I GGWCC 1 cut(s) 720
BmeRI GACNNNNNGTC 1 cut(s) 165
BmeT110I CYCGRG 1 cut(s) 901
BmgT120I GGNCC 3 cut(s) 542, 624, 720
BmiI GGNNCC 1 cut(s) 599
BmrFI CCNGG 1 cut(s) 712
BmsI GCATC 4 cut(s) 451, 733, 832, 871
BplI GAGNNNNNCTC 2 cut(s) 730, 762
BpuEI CTTGAG 4 cut(s) 140, 220, 273, 968
BpuMI CCSGG 1 cut(s) 712
Bsa29I ATCGAT 1 cut(s) 699
BsaJI CCNNGG 2 cut(s) 711, 852
BsaXI ACNNNNNCTCC 2 cut(s) 509, 539
Bsc4I CCNNNNNNNGG 2 cut(s) 355, 717
Bse1I ACTGG 1 cut(s) 601
BseCI ATCGAT 1 cut(s) 699
BseDI CCNNGG 2 cut(s) 711, 852
BseGI GGATG 4 cut(s) 580, 655, 741, 766
BseLI CCNNNNNNNGG 2 cut(s) 355, 717
BseMII CTCAG 3 cut(s) 188, 681, 722
BseNI ACTGG 1 cut(s) 601
BseRI GAGGAG 2 cut(s) 58, 198
BseSI GKGCMC 1 cut(s) 223
BseXI GCAGC 3 cut(s) 49, 250, 376
Bsh1236I CGCG 1 cut(s) 876
BshFI GGCC 3 cut(s) 245, 544, 626
BshVI ATCGAT 1 cut(s) 699
BsiHKAI GWGCWC 1 cut(s) 223
BsiHKCI CYCGRG 1 cut(s) 901
BsiSI CCGG 1 cut(s) 711
BslFI GGGAC 1 cut(s) 113
BslI CCNNNNNNNGG 2 cut(s) 355, 717
BsmAI GTCTC 2 cut(s) 173, 431
BsmBI CGTCTC 2 cut(s) 173, 431
BsmFI GGGAC 1 cut(s) 113
BsnI GGCC 3 cut(s) 245, 544, 626
BsoBI CYCGRG 1 cut(s) 901
Bsp1286I GDGCHC 1 cut(s) 223
Bsp143I GATC 4 cut(s) 597, 654, 696, 700
Bsp19I CCATGG 1 cut(s) 852
BspACI CCGC 1 cut(s) 228
BspANI GGCC 3 cut(s) 245, 544, 626
BspCNI CTCAG 3 cut(s) 187, 680, 723
BspDI ATCGAT 1 cut(s) 699
BspFNI CGCG 1 cut(s) 876
BspLI GGNNCC 1 cut(s) 599
BspPI GGATC 2 cut(s) 592, 605
BspQI GCTCTTC 1 cut(s) 92
BsrI ACTGG 1 cut(s) 601
BssECI CCNNGG 2 cut(s) 711, 852
BssMI GATC 4 cut(s) 597, 654, 696, 700
BssSI CACGAG 2 cut(s) 747, 788
BssT1I CCWWGG 1 cut(s) 852
Bst2BI CACGAG 2 cut(s) 747, 788
Bst4CI ACNGT 1 cut(s) 835
Bst6I CTCTTC 4 cut(s) 79, 92, 477, 931
BstC8I GCNNGC 1 cut(s) 342
BstDEI CTNAG 4 cut(s) 174, 390, 667, 731
BstDSI CCRYGG 1 cut(s) 852
BstF5I GGATG 4 cut(s) 580, 655, 741, 766
BstFNI CGCG 1 cut(s) 876
BstHHI GCGC 3 cut(s) 346, 369, 876
BstKTI GATC 4 cut(s) 600, 657, 699, 703
BstMAI GTCTC 2 cut(s) 173, 431
BstMBI GATC 4 cut(s) 597, 654, 696, 700
BstMWI GCNNNNNNNGC 2 cut(s) 37, 119
BstSCI CCNGG 1 cut(s) 710
BstSLI GKGCMC 1 cut(s) 223
BstUI CGCG 1 cut(s) 876
BstV1I GCAGC 3 cut(s) 49, 250, 376
BstX2I RGATCY 1 cut(s) 597
BstYI RGATCY 1 cut(s) 597
Bsu15I ATCGAT 1 cut(s) 699
BsuRI GGCC 3 cut(s) 245, 544, 626
BsuTUI ATCGAT 1 cut(s) 699
BtgI CCRYGG 1 cut(s) 852
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 4 cut(s) 580, 655, 741, 766
BtsIMutI CAGTG 1 cut(s) 608
Cac8I GCNNGC 1 cut(s) 342
CfoI GCGC 3 cut(s) 346, 369, 876
Cfr13I GGNCC 3 cut(s) 542, 624, 720
ClaI ATCGAT 1 cut(s) 699
CseI GACGC 1 cut(s) 865
Csp6I GTAC 4 cut(s) 93, 335, 685, 763
CspCI CAANNNNNGTGG 1 cut(s) 35
CviAII CATG 6 cut(s) 224, 350, 676, 803, 853, 953
CviQI GTAC 4 cut(s) 93, 335, 685, 763
DdeI CTNAG 4 cut(s) 174, 390, 667, 731
DpnI GATC 4 cut(s) 599, 656, 698, 702
DpnII GATC 4 cut(s) 597, 654, 696, 700
DriI GACNNNNNGTC 1 cut(s) 165
Eam1104I CTCTTC 4 cut(s) 79, 92, 477, 931
Eam1105I GACNNNNNGTC 1 cut(s) 165
EarI CTCTTC 4 cut(s) 79, 92, 477, 931
Eco130I CCWWGG 1 cut(s) 852
Eco32I GATATC 1 cut(s) 673
Eco47I GGWCC 1 cut(s) 720
Eco57I CTGAAG 3 cut(s) 309, 388, 512
Eco88I CYCGRG 1 cut(s) 901
EcoRI GAATTC 1 cut(s) 795
EcoRV GATATC 1 cut(s) 673
EcoT14I CCWWGG 1 cut(s) 852
ErhI CCWWGG 1 cut(s) 852
Esp3I CGTCTC 2 cut(s) 173, 431
FaeI CATG 6 cut(s) 227, 353, 679, 806, 856, 956
FalI AAGNNNNNCTT 2 cut(s) 71, 103
FaqI GGGAC 1 cut(s) 113
FatI CATG 6 cut(s) 223, 349, 675, 802, 852, 952
FbaI TGATCA 1 cut(s) 654
FblI GTMKAC 1 cut(s) 294
Fnu4HI GCNGC 3 cut(s) 38, 264, 365
FokI GGATG 4 cut(s) 587, 662, 748, 753
Fsp4HI GCNGC 3 cut(s) 38, 264, 365
FspBI CTAG 1 cut(s) 435
GlaI GCGC 3 cut(s) 345, 368, 875
GluI GCNGC 3 cut(s) 38, 264, 365
HaeIII GGCC 3 cut(s) 245, 544, 626
HapII CCGG 1 cut(s) 711
HgaI GACGC 1 cut(s) 865
HhaI GCGC 3 cut(s) 346, 369, 876
Hin1II CATG 6 cut(s) 227, 353, 679, 806, 856, 956
Hin6I GCGC 3 cut(s) 344, 367, 874
HinP1I GCGC 3 cut(s) 344, 367, 874
HincII GTYRAC 1 cut(s) 838
HindII GTYRAC 1 cut(s) 838
HinfI GANTC 1 cut(s) 233
HpaII CCGG 1 cut(s) 711
HphI GGTGA 2 cut(s) 242, 727
Hpy166II GTNNAC 5 cut(s) 221, 295, 763, 831, 838
Hpy188I TCNGA 5 cut(s) 328, 492, 659, 670, 970
Hpy188III TCNNGA 5 cut(s) 51, 157, 375, 790, 947
Hpy8I GTNNAC 5 cut(s) 221, 295, 763, 831, 838
Hpy99I CGWCG 1 cut(s) 881
HpyAV CCTTC 3 cut(s) 18, 124, 811
HpyCH4III ACNGT 1 cut(s) 835
HpyCH4IV ACGT 1 cut(s) 424
HpyCH4V TGCA 9 cut(s) 181, 221, 300, 364, 449, 464, 569, 802, 925
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 119
HpyF3I CTNAG 4 cut(s) 174, 390, 667, 731
HpySE526I ACGT 1 cut(s) 424
Hsp92II CATG 6 cut(s) 227, 353, 679, 806, 856, 956
HspAI GCGC 3 cut(s) 344, 367, 874
Ksp22I TGATCA 1 cut(s) 654
Kzo9I GATC 4 cut(s) 597, 654, 696, 700
LguI GCTCTTC 1 cut(s) 92
LmnI GCTCC 2 cut(s) 351, 871
LpnPI CCDG 8 cut(s) 36, 52, 340, 360, 499, 614, 724, 946
Lsp1109I GCAGC 3 cut(s) 49, 250, 376
LweI GCATC 4 cut(s) 451, 733, 832, 871
MaeI CTAG 1 cut(s) 435
MaeII ACGT 1 cut(s) 424
MaeIII GTNAC 2 cut(s) 230, 889
MalI GATC 4 cut(s) 599, 656, 698, 702
MboI GATC 4 cut(s) 597, 654, 696, 700
MboII GAAGA 8 cut(s) 66, 79, 133, 139, 315, 494, 826, 948
MfeI CAATTG 1 cut(s) 477
MflI RGATCY 1 cut(s) 597
MhlI GDGCHC 1 cut(s) 223
MluCI AATT 4 cut(s) 283, 477, 610, 795
MlyI GAGTC 1 cut(s) 227
MmeI TCCRAC 1 cut(s) 376
MseI TTAA 1 cut(s) 282
MslI CAYNNNNRTG 2 cut(s) 228, 692
MspI CCGG 1 cut(s) 711
MspR9I CCNGG 1 cut(s) 712
MunI CAATTG 1 cut(s) 477
MvnI CGCG 1 cut(s) 876
MwoI GCNNNNNNNGC 2 cut(s) 37, 119
NciI CCSGG 1 cut(s) 712
NcoI CCATGG 1 cut(s) 852
NdeII GATC 4 cut(s) 597, 654, 696, 700
NlaIII CATG 6 cut(s) 227, 353, 679, 806, 856, 956
NlaIV GGNNCC 1 cut(s) 599
NmuCI GTSAC 2 cut(s) 230, 889
PciSI GCTCTTC 1 cut(s) 92
PkrI GCNGC 3 cut(s) 39, 265, 366
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
PspN4I GGNNCC 1 cut(s) 599
PspPI GGNCC 3 cut(s) 542, 624, 720
PsuI RGATCY 1 cut(s) 597
RsaI GTAC 4 cut(s) 94, 336, 686, 764
RsaNI GTAC 4 cut(s) 93, 335, 685, 763
RseI CAYNNNNRTG 2 cut(s) 228, 692
SapI GCTCTTC 1 cut(s) 92
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 3 cut(s) 38, 264, 365
Sau3AI GATC 4 cut(s) 597, 654, 696, 700
Sau96I GGNCC 3 cut(s) 542, 624, 720
ScaI AGTACT 1 cut(s) 336
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 1 cut(s) 712
SduI GDGCHC 1 cut(s) 223
SfaNI GCATC 4 cut(s) 451, 733, 832, 871
SinI GGWCC 1 cut(s) 720
SmiMI CAYNNNNRTG 2 cut(s) 228, 692
SmlI CTYRAG 4 cut(s) 155, 235, 288, 947
SmoI CTYRAG 4 cut(s) 155, 235, 288, 947
Sse9I AATT 4 cut(s) 283, 477, 610, 795
SsiI CCGC 1 cut(s) 228
SspI AATATT 1 cut(s) 469
SspMI CTAG 1 cut(s) 435
StyD4I CCNGG 1 cut(s) 710
StyI CCWWGG 1 cut(s) 852
TaaI ACNGT 1 cut(s) 835
TaiI ACGT 1 cut(s) 427
TaqI TCGA 2 cut(s) 699, 879
TasI AATT 4 cut(s) 283, 477, 610, 795
TatI WGTACW 1 cut(s) 334
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TscAI CASTG 1 cut(s) 608
TseFI GTSAC 2 cut(s) 230, 889
TseI GCWGC 3 cut(s) 37, 263, 364
Tsp45I GTSAC 2 cut(s) 230, 889
TspDTI ATGAA 3 cut(s) 133, 425, 795
TspGWI ACGGA 1 cut(s) 80
TspRI CASTG 1 cut(s) 608
VneI GTGCAC 1 cut(s) 219
VpaK11BI GGWCC 1 cut(s) 720
XapI RAATTY 1 cut(s) 795
XmiI GTMKAC 1 cut(s) 294
XspI CTAG 1 cut(s) 435
ZrmI AGTACT 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.