RLG00000015558

Glycerophosphoryl diester phosphodiesterase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0012249
Physical Location & Seq
Forward (+)
67836498 .. 67840773
4276 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015558

Sequence Viewer

Length: 975 bp
ATGGCGATCTCAACGAGAGTGGGAAGGAGGCAATCCTTACATCAACAACAGCGGAGGTTTCCGATCAGGTTTTCTTCAAAGAGACTCTTCCGGACGATTCTCATCAGCCTCGCCTTCATCGCTCTCGTCCCTCCCCTTTTCTTCATCTTCAAGCTCAAGACCTTTCGTCTCACTCAGTTGCGAAAGTGTGGTTGGCTAAATAGTCCTCCCCTTGTATGTGCGCATGGCGGTGACTCAAGTTCGGCCTTTCCAAACACGATGGCTGCATATCACTCCGCTCTTAATTCTCAAGTAGACTGCATTGAGATTGATGTTTCTCGTTCTTCAGATGGAGTTCTGCTTGCGCTCCATGACAGGGATTTGCAGCGGATATCTGGAAACAATACTTCTAAGGTTGGACACTTAAGCATGAAAGAGATAAAACACCTCGGTTCGATGCATCAATCTGCAAAGTTCCATGATGCAAATATTCCTACAATTGAAGAGGCTCTTAAGTTGGTATCAAGTTCAGTTAGGCAGGTGGTGTTAGATATAAAAGTCGGGCCTCCATTGTATGAAAAAGGTCTTGCAAGGGATGTTCTTGCTGTTGTTGAGAGGATCCTGTGTAGGAATTGCATTGTATGGGCCAAAAGCGACAATTTAGCAAGGGATGTGATCAGACTATCCTCAGATGTCATGGTGGGATACATTGTTATGATCGATCAGTCAACTGGGGCTAGGACCAACTTACTGAGGATGAGAGATGCCCGAGTTGTTGGTGTGTACCATCCCTTGATTGATGAAAAGCTTGTGAGAATTCTGCATGGGAGAAATAAGAAGGTATATGCGTGGACTGTTGACGATGCGGAGTCCATGGAAAATATGTTGTTTGAGCACGTCGATGCCATTGTAACAAGCAACCCGAGGATGCTTCAAGCTCTAATGCAAGATACCAGAAGAAACTGTCTTGAGCATGGTTTCTCATTATCAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GDPD

Protein Analysis

325

Amino Acids

36.57

Weight (kDa)

9.63

Isoelectric Point (pI)

41.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDPD PF03009 75 - 301 1.7e-25 Glycerophosphoryl diester phosphodiesterase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 508
Acc16I TGCGCA 1 cut(s) 222
Acc36I ACCTGC 1 cut(s) 508
AccBSI CCGCTC 1 cut(s) 278
AccI GTMKAC 1 cut(s) 294
AccIII TCCGGA 1 cut(s) 90
AciI CCGC 5 cut(s) 52, 228, 276, 367, 845
AclWI GGATC 2 cut(s) 592, 605
AcsI RAATTY 1 cut(s) 795
AcuI CTGAAG 1 cut(s) 309
AfaI GTAC 1 cut(s) 764
AfiI CCNNNNNNNGG 1 cut(s) 355
AflII CTTAAG 2 cut(s) 403, 491
AgsI TTSAA 4 cut(s) 78, 151, 482, 914
AhdI GACNNNNNGTC 1 cut(s) 165
AjiI CACGTC 1 cut(s) 877
AjuI GAANNNNNNNTTGG 2 cut(s) 175, 207
AluBI AGCT 3 cut(s) 154, 787, 917
AluI AGCT 3 cut(s) 154, 787, 917
Alw21I GWGCWC 1 cut(s) 876
Alw26I GTCTC 2 cut(s) 76, 173
AlwI GGATC 2 cut(s) 592, 605
Ama87I CYCGRG 2 cut(s) 747, 901
Aor13HI TCCGGA 1 cut(s) 90
AoxI GGCC 3 cut(s) 243, 542, 624
ApeKI GCWGC 2 cut(s) 263, 364
ApoI RAATTY 1 cut(s) 795
AspLEI GCGC 2 cut(s) 223, 346
AspS9I GGNCC 3 cut(s) 542, 624, 720
AsuHPI GGTGA 1 cut(s) 242
AvaI CYCGRG 2 cut(s) 747, 901
AvaII GGWCC 1 cut(s) 720
BamHI GGATCC 1 cut(s) 597
Bbv12I GWGCWC 1 cut(s) 876
BbvI GCAGC 2 cut(s) 250, 376
BccI CCATC 3 cut(s) 253, 323, 774
BciVI GTATCC 1 cut(s) 677
BclI TGATCA 1 cut(s) 654
BcoDI GTCTC 2 cut(s) 76, 173
BfaI CTAG 1 cut(s) 717
BfrI CTTAAG 2 cut(s) 403, 491
BfuAI ACCTGC 1 cut(s) 508
BfuI GTATCC 1 cut(s) 677
BisI GCNGC 2 cut(s) 264, 365
BlsI GCNGC 2 cut(s) 265, 366
Bme18I GGWCC 1 cut(s) 720
BmeRI GACNNNNNGTC 1 cut(s) 165
BmeT110I CYCGRG 2 cut(s) 747, 901
BmgBI CACGTC 1 cut(s) 877
BmgT120I GGNCC 3 cut(s) 542, 624, 720
BmiI GGNNCC 1 cut(s) 599
BmrI ACTGGG 1 cut(s) 720
BmsI GCATC 7 cut(s) 426, 448, 451, 733, 832, 871, 897
BmuI ACTGGG 1 cut(s) 720
BpuEI CTTGAG 4 cut(s) 140, 220, 273, 968
Bsa29I ATCGAT 1 cut(s) 699
BsaBI GATNNNNATC 1 cut(s) 101
BsaJI CCNNGG 3 cut(s) 427, 852, 902
BsaWI WCCGGW 1 cut(s) 90
Bsc4I CCNNNNNNNGG 1 cut(s) 355
Bse1I ACTGG 1 cut(s) 715
Bse8I GATNNNNATC 1 cut(s) 101
BseAI TCCGGA 1 cut(s) 90
BseCI ATCGAT 1 cut(s) 699
BseDI CCNNGG 3 cut(s) 427, 852, 902
BseGI GGATG 5 cut(s) 580, 655, 741, 766, 912
BseJI GATNNNNATC 1 cut(s) 101
BseLI CCNNNNNNNGG 1 cut(s) 355
BseMII CTCAG 3 cut(s) 188, 681, 722
BseNI ACTGG 1 cut(s) 715
BseXI GCAGC 2 cut(s) 250, 376
BshFI GGCC 3 cut(s) 245, 544, 626
BshVI ATCGAT 1 cut(s) 699
BsiHKAI GWGCWC 1 cut(s) 876
BsiHKCI CYCGRG 2 cut(s) 747, 901
BsiSI CCGG 1 cut(s) 91
BslFI GGGAC 1 cut(s) 113
BslI CCNNNNNNNGG 1 cut(s) 355
BsmAI GTCTC 2 cut(s) 76, 173
BsmBI CGTCTC 1 cut(s) 173
BsmFI GGGAC 1 cut(s) 113
BsnI GGCC 3 cut(s) 245, 544, 626
BsoBI CYCGRG 2 cut(s) 747, 901
Bsp1286I GDGCHC 1 cut(s) 876
Bsp13I TCCGGA 1 cut(s) 90
Bsp143I GATC 6 cut(s) 6, 63, 597, 654, 696, 700
Bsp19I CCATGG 1 cut(s) 852
BspACI CCGC 5 cut(s) 52, 228, 276, 367, 845
BspANI GGCC 3 cut(s) 245, 544, 626
BspCNI CTCAG 3 cut(s) 187, 680, 723
BspDI ATCGAT 1 cut(s) 699
BspEI TCCGGA 1 cut(s) 90
BspLI GGNNCC 1 cut(s) 599
BspMI ACCTGC 1 cut(s) 508
BspPI GGATC 2 cut(s) 592, 605
BspTI CTTAAG 2 cut(s) 403, 491
BsrBI CCGCTC 1 cut(s) 278
BsrI ACTGG 1 cut(s) 715
BssECI CCNNGG 3 cut(s) 427, 852, 902
BssMI GATC 6 cut(s) 6, 63, 597, 654, 696, 700
BssT1I CCWWGG 1 cut(s) 852
Bst4CI ACNGT 2 cut(s) 835, 944
Bst6I CTCTTC 2 cut(s) 92, 477
BstAFI CTTAAG 2 cut(s) 403, 491
BstC8I GCNNGC 1 cut(s) 342
BstDEI CTNAG 4 cut(s) 174, 390, 667, 731
BstDSI CCRYGG 1 cut(s) 852
BstF5I GGATG 5 cut(s) 580, 655, 741, 766, 912
BstHHI GCGC 2 cut(s) 223, 346
BstKTI GATC 6 cut(s) 9, 66, 600, 657, 699, 703
BstMAI GTCTC 2 cut(s) 76, 173
BstMBI GATC 6 cut(s) 6, 63, 597, 654, 696, 700
BstMWI GCNNNNNNNGC 1 cut(s) 119
BstV1I GCAGC 2 cut(s) 250, 376
BstX2I RGATCY 1 cut(s) 597
BstYI RGATCY 1 cut(s) 597
Bsu15I ATCGAT 1 cut(s) 699
BsuI GTATCC 1 cut(s) 677
BsuRI GGCC 3 cut(s) 245, 544, 626
BsuTUI ATCGAT 1 cut(s) 699
BtgI CCRYGG 1 cut(s) 852
BtgZI GCGATG 1 cut(s) 103
BtrI CACGTC 1 cut(s) 877
BtsCI GGATG 5 cut(s) 580, 655, 741, 766, 912
BveI ACCTGC 1 cut(s) 508
Cac8I GCNNGC 1 cut(s) 342
CfoI GCGC 2 cut(s) 223, 346
Cfr13I GGNCC 3 cut(s) 542, 624, 720
ClaI ATCGAT 1 cut(s) 699
Csp6I GTAC 1 cut(s) 763
CspCI CAANNNNNGTGG 1 cut(s) 35
CviAII CATG 8 cut(s) 224, 350, 409, 458, 676, 803, 853, 953
CviQI GTAC 1 cut(s) 763
DdeI CTNAG 4 cut(s) 174, 390, 667, 731
DpnI GATC 6 cut(s) 8, 65, 599, 656, 698, 702
DpnII GATC 6 cut(s) 6, 63, 597, 654, 696, 700
DriI GACNNNNNGTC 1 cut(s) 165
Eam1104I CTCTTC 2 cut(s) 92, 477
Eam1105I GACNNNNNGTC 1 cut(s) 165
EarI CTCTTC 2 cut(s) 92, 477
Eco130I CCWWGG 1 cut(s) 852
Eco32I GATATC 1 cut(s) 372
Eco47I GGWCC 1 cut(s) 720
Eco57I CTGAAG 1 cut(s) 309
Eco88I CYCGRG 2 cut(s) 747, 901
EcoRI GAATTC 1 cut(s) 795
EcoRV GATATC 1 cut(s) 372
EcoT14I CCWWGG 1 cut(s) 852
EcoT22I ATGCAT 1 cut(s) 441
ErhI CCWWGG 1 cut(s) 852
Esp3I CGTCTC 1 cut(s) 173
FaeI CATG 8 cut(s) 227, 353, 412, 461, 679, 806, 856, 956
FalI AAGNNNNNCTT 4 cut(s) 71, 103, 474, 506
FaqI GGGAC 1 cut(s) 113
FatI CATG 8 cut(s) 223, 349, 408, 457, 675, 802, 852, 952
FbaI TGATCA 1 cut(s) 654
FblI GTMKAC 1 cut(s) 294
Fnu4HI GCNGC 2 cut(s) 264, 365
FokI GGATG 5 cut(s) 587, 662, 748, 753, 919
Fsp4HI GCNGC 2 cut(s) 264, 365
FspAI RTGCGCAY 1 cut(s) 222
FspBI CTAG 1 cut(s) 717
FspI TGCGCA 1 cut(s) 222
GlaI GCGC 2 cut(s) 222, 345
GluI GCNGC 2 cut(s) 264, 365
HaeIII GGCC 3 cut(s) 245, 544, 626
HapII CCGG 1 cut(s) 91
HhaI GCGC 2 cut(s) 223, 346
Hin1II CATG 8 cut(s) 227, 353, 412, 461, 679, 806, 856, 956
Hin6I GCGC 2 cut(s) 221, 344
HinP1I GCGC 2 cut(s) 221, 344
HincII GTYRAC 2 cut(s) 708, 838
HindII GTYRAC 2 cut(s) 708, 838
HindIII AAGCTT 1 cut(s) 785
HinfI GANTC 4 cut(s) 84, 97, 233, 848
HpaII CCGG 1 cut(s) 91
HphI GGTGA 1 cut(s) 242
Hpy166II GTNNAC 5 cut(s) 295, 708, 763, 831, 838
Hpy188I TCNGA 5 cut(s) 63, 328, 659, 670, 970
Hpy188III TCNNGA 4 cut(s) 91, 157, 375, 947
Hpy8I GTNNAC 5 cut(s) 295, 708, 763, 831, 838
Hpy99I CGWCG 1 cut(s) 881
HpyAV CCTTC 3 cut(s) 18, 124, 811
HpyCH4III ACNGT 2 cut(s) 835, 944
HpyCH4IV ACGT 1 cut(s) 876
HpyF10VI GCNNNNNNNGC 1 cut(s) 119
HpyF3I CTNAG 4 cut(s) 174, 390, 667, 731
HpySE526I ACGT 1 cut(s) 876
Hsp92II CATG 8 cut(s) 227, 353, 412, 461, 679, 806, 856, 956
HspAI GCGC 2 cut(s) 221, 344
Kpn2I TCCGGA 1 cut(s) 90
Ksp22I TGATCA 1 cut(s) 654
Kzo9I GATC 6 cut(s) 6, 63, 597, 654, 696, 700
LmnI GCTCC 1 cut(s) 351
LpnPI CCDG 8 cut(s) 52, 104, 340, 360, 503, 614, 696, 946
Lsp1109I GCAGC 2 cut(s) 250, 376
LweI GCATC 7 cut(s) 426, 448, 451, 733, 832, 871, 897
MaeI CTAG 1 cut(s) 717
MaeII ACGT 1 cut(s) 876
MaeIII GTNAC 2 cut(s) 230, 889
MalI GATC 6 cut(s) 8, 65, 599, 656, 698, 702
MbiI CCGCTC 1 cut(s) 278
MboI GATC 6 cut(s) 6, 63, 597, 654, 696, 700
MboII GAAGA 7 cut(s) 66, 79, 133, 139, 315, 494, 948
MfeI CAATTG 1 cut(s) 477
MflI RGATCY 1 cut(s) 597
MhlI GDGCHC 1 cut(s) 876
MluCI AATT 5 cut(s) 283, 477, 610, 637, 795
MlyI GAGTC 3 cut(s) 78, 227, 857
MmeI TCCRAC 1 cut(s) 376
Mph1103I ATGCAT 1 cut(s) 441
MroI TCCGGA 1 cut(s) 90
MseI TTAA 3 cut(s) 282, 404, 492
MslI CAYNNNNRTG 3 cut(s) 228, 692, 879
MspA1I CMGCKG 2 cut(s) 52, 367
MspCI CTTAAG 2 cut(s) 403, 491
MspI CCGG 1 cut(s) 91
MunI CAATTG 1 cut(s) 477
MwoI GCNNNNNNNGC 1 cut(s) 119
NcoI CCATGG 1 cut(s) 852
NdeII GATC 6 cut(s) 6, 63, 597, 654, 696, 700
NlaIII CATG 8 cut(s) 227, 353, 412, 461, 679, 806, 856, 956
NlaIV GGNNCC 1 cut(s) 599
NmuCI GTSAC 1 cut(s) 230
NsbI TGCGCA 1 cut(s) 222
NsiI ATGCAT 1 cut(s) 441
PaqCI CACCTGC 1 cut(s) 508
PfeI GAWTC 1 cut(s) 97
PkrI GCNGC 2 cut(s) 265, 366
PleI GAGTC 3 cut(s) 78, 227, 856
PpsI GAGTC 3 cut(s) 78, 227, 856
PspN4I GGNNCC 1 cut(s) 599
PspPI GGNCC 3 cut(s) 542, 624, 720
PsuI RGATCY 1 cut(s) 597
RsaI GTAC 1 cut(s) 764
RsaNI GTAC 1 cut(s) 763
RseI CAYNNNNRTG 3 cut(s) 228, 692, 879
SaqAI TTAA 3 cut(s) 282, 404, 492
SatI GCNGC 2 cut(s) 264, 365
Sau3AI GATC 6 cut(s) 6, 63, 597, 654, 696, 700
Sau96I GGNCC 3 cut(s) 542, 624, 720
SchI GAGTC 3 cut(s) 78, 227, 857
SduI GDGCHC 1 cut(s) 876
SfaNI GCATC 7 cut(s) 426, 448, 451, 733, 832, 871, 897
SinI GGWCC 1 cut(s) 720
SmiMI CAYNNNNRTG 3 cut(s) 228, 692, 879
SmlI CTYRAG 6 cut(s) 155, 235, 288, 403, 491, 947
SmoI CTYRAG 6 cut(s) 155, 235, 288, 403, 491, 947
Sse9I AATT 5 cut(s) 283, 477, 610, 637, 795
SsiI CCGC 5 cut(s) 52, 228, 276, 367, 845
SspI AATATT 1 cut(s) 469
SspMI CTAG 1 cut(s) 717
StyI CCWWGG 1 cut(s) 852
TaaI ACNGT 2 cut(s) 835, 944
TaiI ACGT 1 cut(s) 879
TaqI TCGA 3 cut(s) 434, 699, 879
TasI AATT 5 cut(s) 283, 477, 610, 637, 795
TfiI GAWTC 1 cut(s) 97
Tru1I TTAA 3 cut(s) 282, 404, 492
Tru9I TTAA 3 cut(s) 282, 404, 492
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 2 cut(s) 263, 364
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 5 cut(s) 106, 133, 425, 570, 795
Vha464I CTTAAG 2 cut(s) 403, 491
VpaK11BI GGWCC 1 cut(s) 720
XapI RAATTY 1 cut(s) 795
XmiI GTMKAC 1 cut(s) 294
XspI CTAG 1 cut(s) 717
Zsp2I ATGCAT 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.