Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0012249

Physical Location & Seq

Genomic Coordinates Forward (+)

67668818 .. 67674140

Gene Structure 5323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0494100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2448 bp

ATGTCATCGGCGGTGGAGTATTTACGTCCGACAATCCACACTCGGTTCTGCTTGTACTCCAATTCTAATCTCCGTCACTGCAGTAATGGATTGGGCTTCTTCTTCCTCCGCGGCGCCCAGTCTAGGGTTTTCAGTCCCGACGTGAAACGCTGCGTTTCGGCGGCGCCGTTCCCGAAGGTAGCGAGGGTCTCCGAGAAAAGGTTCGGGCACAATGGAGGAGGGTTCAGGACGGTTAGGGTTTTGGCGAACGAGCCGGAGAGCGATTCCGGCGAGAGGAGCGAGGCAAGCGAGGGGCAGGGTGTGAATGGCCAGACGCCGAGTCCGAGTCCGAGCTCGTCGCCGGCGGCGTCGAATCCGAGAAGAGGAGAGAGGCAGAAGAAGAAGGAGAGCTGGTGGTTTTCGAAAGGAGGGAAATGGAAGTGGCAGCCGATTGTGCAGGCCCAGGAGATTGGGATTCTGCTGTTGCAGTTGGGGATTGTGATTTTCGTTATGCGGTTGCTCCGGCCCGGAATTCCGTTGCCCGGGTCCGACCCGAGGCCGCCGACGACGTTTATTAGTGTGCCGTATAGTGACTTTTTGAGTAAGATTAATACTAACCAGGTGCAGAAGGTGGAGGTTGATGGGGTTCATGTTATGTTTAAGCTCAAGTCGGAGCCGGGTGGTGAGGTGGAGAGTGAAATGAATGGTGCCAGTAAGCTTCAGGAGTCGGAGGCTTTGATAAGAAGTGTGGCGCCGACGAGGAGGGTGGTTTATACGACCACGAGGCCAACTGATATCAAGACGCCGTATGAGAAGATGCTTGAGAATGAGGTGGAGTTTGGGTCGCCGGATAAGCGCTCCGGCGGATTCATGAACTCTGCGATGATAGCTTTGTTTTATGTTGCTGTGCTTGCAGGGCTTCTCCACCGGTTCCCTGTTAGCTTTTCTCAGCATACTGCTGGTCAGATTAGGAATAGAAAACCTGGGGGCTCTGGTGGTGCCAAAACATCTGAACCCTCGGAAGCAATAACCTTTGCTGATGTTGCTGGTGTTGACGAGGCTAAGGAGGAGCTAGAGGAAATTGTGGAATTTCTTCGGAATCCAGACAGGTATATACGACTTGGTGCTCGTCCTCCCCGTGGTGTTCTGCTGGTGGGTCTTCCTGGGACAGGTAAGACTCTTCTTGCAAAGGCTGTGGCTGGGGAAGCTGAAGTACCCTTTATAAGTTGCTCTGCTAGTGAGTTCGTAGAGCTCTATGTGGGCATGGGTGCCTCTCGTGTAAGGGACCTATTTGCACGGGCAAAAAAGGAAGCACCGTCAATAATATTTATTGATGAGATAGATGCTGTGGCAAAAAGTCGTGATGGAAAACACCGCATTGTCAGCAATGACGAGAGAGAACAAACATTGAATCAGTTGCTCACTGAGATGGATGGGTTTGACAGCAACTCTGCGGTTATTGTTCTTGGAGCTACTAATCGCGCAGATGTTTTAGACCCGGCACTTCGTCGACCAGGGAGATTTGATCGTGTAGTTATGGTGGAAACGCCTGATAGGATTGGAAGAGAATCAATTCTCAAAGTGCATGTTTCCAAAAAGGAACTTCCTTTAGCTAAAGATGTTTACCTTGGTGACATTGCTTCTATGACCACAGGCTTTACTGGGGCTGATCTTGCAAATTTGGTGAATGAAGCTGCTTTGTTGGCCGGAAGACAAAGCAAGGTGGTTGTGGAAAAGATTGATTTCATTCAGGCTGTGGAGAGATCAATAGCTGGAATTGAAAAGAAGACTGCCAAGTTGCAGGGATGTGAGAAGGGTGTAGTTGCACGACATGAAGCTGGTCATGCAGTTGTAGGGACAGCTATTGCAAGTCTTGTTGCTGGACAGCCACGTGTGGAGAAATTGAGCATATTGCCTAGGACAGGGGGGGCATTGGGCTTTACTTACACTCCTCCAGCGACTGAAGATAGATATTTACTATTCATTGATGAGTTACGTGGACGTTTGGTTACGCTTCTTGGAGGACGCGCAGCAGAGGAGTTTGTATATTCAGGTCGTGTATCAACTGGTGCGCTTGATGACATACGGCGAGCCACGGAAATGGCATATAAAGCAGTATCTGAGTATGGTCTTAATGAGAACATTGGCCCTGTGTCTATAGCAACACTTTCTGCTGGTGGAATGGATGAGTCTGGGGGACTTTTTGGAAGGGATCAGGGACACCTTGTTAATCTTGCTCAACGAGAGACTCAAGAATTGCTGCAATCTGCTATGGAGGTAGCCCTTTGTGTTGTACGTGCTAATCCTGTTGTTTTGGAGGGCCTTGGTGCTCATTTGGAAGAAAAAGAGAAAGTAGAAGGTGAAGAGCTACACAAGTGGTTAAAATTGGTGGTTGCACCAGCAGAACTTGCTGCCTTCATTAAAGGCAAGCAACGGGCCCTTCTTCCATTGCAGACCACCTCTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDPD

Protein Analysis

815

Amino Acids

88.45

Weight (kDa)

8.61

Isoelectric Point (pI)

40.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	375 - 508	1.1e-43	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	533 - 575	3.8e-10	AAA+ lid domain
Peptidase_M41	PF01434	596 - 784	1.1e-32	Peptidase family M41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71340
fragaria_vesca	FvH4_2g00320
malus_domestica	MD05G1006200.v1.1
prunus_persica	Prupe.8G003500_v2.0.a1 Prupe.8G003500_v2.0.a1 Prupe.8G003500_v2.0.a1 Prupe.8G003500_v2.0.a1 Prupe.8G003500_v2.0.a1 Prupe.8G003500_v2.0.a1
pyrus_communis	pycom05g00140
rosa_chinensis	RchiOBHm_Chr6g0249611
rosa_laevigata	RLG00000015558
rosa_roxburghii	Rroxscaffold_7G00217490
rosa_rugosa	Rorug05G0494100
rosa_samantha	Rh6AG003900 Rh6BG006300 Rh6CG002900 Rh6DG002700
rosa_wichuraiana	Rw6G000430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1202
AccB1I	GGYRCC	6 cut(s)	113, 163, 686, 730, 977, 1247
AccI	GTMKAC	1 cut(s)	1489
AccII	CGCG	3 cut(s)	111, 1461, 2007
AclWI	GGATC	1 cut(s)	2199
AcoI	YGGCCR	2 cut(s)	307, 1683
AcsI	RAATTY	3 cut(s)	510, 1067, 1657
AcuI	CTGAAG	3 cut(s)	683, 1209, 1962
AcvI	CACGTG	1 cut(s)	1871
AcyI	GRCGYC	6 cut(s)	114, 164, 314, 347, 731, 782
AfaI	GTAC	3 cut(s)	56, 1194, 2274
AfeI	AGCGCT	1 cut(s)	836
AflIII	ACRYGT	1 cut(s)	1870
AgeI	ACCGGT	1 cut(s)	906
AgsI	TTSAA	2 cut(s)	1390, 1760
AhdI	GACNNNNNGTC	1 cut(s)	318
AjiI	CACGTC	1 cut(s)	142
AjnI	CCWGG	5 cut(s)	441, 597, 961, 1141, 1492
Alw21I	GWGCWC	4 cut(s)	335, 1108, 1233, 2311
Alw26I	GTCTC	2 cut(s)	193, 2219
AlwI	GGATC	1 cut(s)	2199
AlwNI	CAGNNNCTG	2 cut(s)	1940, 2099
Ama87I	CYCGRG	2 cut(s)	521, 532
Aor51HI	AGCGCT	1 cut(s)	836
AoxI	GGCC	9 cut(s)	307, 438, 503, 536, 764, 1683, 2125, 2299, 2415
ApaI	GGGCCC	1 cut(s)	2419
ApeKI	GCWGC	6 cut(s)	150, 424, 1673, 2009, 2239, 2390
ApoI	RAATTY	3 cut(s)	510, 1067, 1657
AseI	ATTAAT	1 cut(s)	588
AsiGI	ACCGGT	1 cut(s)	906
Asp700I	GAANNNNTTC	3 cut(s)	200, 1071, 1551
AspA2I	CCTAGG	1 cut(s)	1895
AspLEI	GCGC	7 cut(s)	116, 166, 733, 837, 1463, 2009, 2053
AspS9I	GGNCC	8 cut(s)	439, 504, 525, 1264, 2126, 2299, 2415, 2416
AsuC2I	CCSGG	5 cut(s)	507, 522, 523, 657, 1478
AsuHPI	GGTGA	4 cut(s)	674, 1622, 1675, 2351
AsuII	TTCGAA	1 cut(s)	401
AvaI	CYCGRG	2 cut(s)	521, 532
AvaII	GGWCC	2 cut(s)	525, 1264
AvrII	CCTAGG	1 cut(s)	1895
BaeGI	GKGCMC	2 cut(s)	210, 2419
BalI	TGGCCA	1 cut(s)	309
BanI	GGYRCC	6 cut(s)	113, 163, 686, 730, 977, 1247
BanII	GRGCYC	4 cut(s)	335, 971, 1233, 2419
BarI	GAAGNNNNNNTAC	2 cut(s)	1176, 1208
BauI	CACGAG	2 cut(s)	760, 1254
BbrPI	CACGTG	1 cut(s)	1871
BbsI	GAAGAC	3 cut(s)	1130, 1696, 1772
Bbv12I	GWGCWC	4 cut(s)	335, 1108, 1233, 2311
BbvI	GCAGC	6 cut(s)	137, 436, 1660, 2021, 2226, 2377
BccI	CCATC	4 cut(s)	614, 1337, 1402, 1406
BceAI	ACGGC	4 cut(s)	151, 547, 769, 2081
BciT130I	CCWGG	5 cut(s)	443, 599, 963, 1143, 1494
BcnI	CCSGG	5 cut(s)	507, 522, 523, 657, 1478
BcoDI	GTCTC	2 cut(s)	193, 2219
BfaI	CTAG	4 cut(s)	123, 1052, 1215, 1896
BfmI	CTRYAG	2 cut(s)	79, 2136
BfoI	RGCGCY	4 cut(s)	117, 167, 734, 838
BlnI	CCTAGG	1 cut(s)	1895
Bme18I	GGWCC	2 cut(s)	525, 1264
BmeRI	GACNNNNNGTC	1 cut(s)	318
BmeT110I	CYCGRG	2 cut(s)	521, 532
BmgBI	CACGTC	1 cut(s)	142
BmgT120I	GGNCC	8 cut(s)	439, 504, 525, 1264, 2126, 2299, 2415, 2416
BmrI	ACTGGG	2 cut(s)	112, 1650
BmsI	GCATC	2 cut(s)	786, 1312
BmuI	ACTGGG	2 cut(s)	112, 1650
BpiI	GAAGAC	3 cut(s)	1130, 1696, 1772
BpmI	CTGGAG	1 cut(s)	1917
Bpu10I	CCTNAGC	1 cut(s)	1041
Bpu14I	TTCGAA	1 cut(s)	401
BpuEI	CTTGAG	3 cut(s)	629, 821, 2214
BpuMI	CCSGG	5 cut(s)	507, 522, 523, 657, 1478
BsaAI	YACGTR	3 cut(s)	1871, 1976, 2276
BsaHI	GRCGYC	6 cut(s)	114, 164, 314, 347, 731, 782
BsaI	GGTCTC	1 cut(s)	193
BsaWI	WCCGGW	1 cut(s)	906
BsaXI	ACNNNNNCTCC	6 cut(s)	377, 407, 806, 836, 1912, 1942
Bse118I	RCCGGY	2 cut(s)	340, 906
Bse1I	ACTGG	4 cut(s)	118, 690, 1645, 2050
Bse3DI	GCAATG	3 cut(s)	1372, 1614, 2426
BseBI	CCWGG	5 cut(s)	443, 599, 963, 1143, 1494
BseGI	GGATG	3 cut(s)	1417, 1790, 2170
BseMI	GCAATG	3 cut(s)	1372, 1614, 2426
BseMII	CTCAG	3 cut(s)	941, 1395, 2091
BseNI	ACTGG	4 cut(s)	118, 690, 1645, 2050
BseRI	GAGGAG	7 cut(s)	231, 289, 378, 754, 1061, 1920, 2030
BseSI	GKGCMC	2 cut(s)	210, 2419
BseXI	GCAGC	6 cut(s)	137, 436, 1660, 2021, 2226, 2377
BseYI	CCCAGC	1 cut(s)	1178
BsgI	GTGCAG	2 cut(s)	455, 623
Bsh1236I	CGCG	3 cut(s)	111, 1461, 2007
BshFI	GGCC	9 cut(s)	309, 440, 505, 538, 766, 1685, 2127, 2301, 2417
BshNI	GGYRCC	6 cut(s)	113, 163, 686, 730, 977, 1247
BshTI	ACCGGT	1 cut(s)	906
BsiHKAI	GWGCWC	4 cut(s)	335, 1108, 1233, 2311
BsiHKCI	CYCGRG	2 cut(s)	521, 532
BslFI	GGGAC	6 cut(s)	120, 1159, 1277, 1849, 2190, 2211
BsmAI	GTCTC	2 cut(s)	193, 2219
BsmFI	GGGAC	6 cut(s)	120, 1159, 1277, 1849, 2190, 2211
BsnI	GGCC	9 cut(s)	309, 440, 505, 538, 766, 1685, 2127, 2301, 2417
Bso31I	GGTCTC	1 cut(s)	193
BsoBI	CYCGRG	2 cut(s)	521, 532
Bsp119I	TTCGAA	1 cut(s)	401
Bsp120I	GGGCCC	1 cut(s)	2415
Bsp1286I	GDGCHC	7 cut(s)	210, 335, 971, 1108, 1233, 2311, 2419
Bsp143I	GATC	4 cut(s)	1504, 1648, 1742, 2191
BspANI	GGCC	9 cut(s)	309, 440, 505, 538, 766, 1685, 2127, 2301, 2417
BspCNI	CTCAG	3 cut(s)	940, 1396, 2092
BspFNI	CGCG	3 cut(s)	111, 1461, 2007
BspHI	TCATGA	1 cut(s)	849
BspMAI	CTGCAG	1 cut(s)	83
BspPI	GGATC	1 cut(s)	2199
BspQI	GCTCTTC	1 cut(s)	2337
BspT104I	TTCGAA	1 cut(s)	401
BspT107I	GGYRCC	6 cut(s)	113, 163, 686, 730, 977, 1247
BspTNI	GGTCTC	1 cut(s)	193
BsrDI	GCAATG	3 cut(s)	1372, 1614, 2426
BsrFI	RCCGGY	2 cut(s)	340, 906
BsrI	ACTGG	4 cut(s)	118, 690, 1645, 2050
BssAI	RCCGGY	2 cut(s)	340, 906
BssMI	GATC	4 cut(s)	1504, 1648, 1742, 2191
BssNI	GRCGYC	6 cut(s)	114, 164, 314, 347, 731, 782
BssSI	CACGAG	2 cut(s)	760, 1254
BssT1I	CCWWGG	3 cut(s)	1606, 1895, 2302
Bst2BI	CACGAG	2 cut(s)	760, 1254
Bst2UI	CCWGG	5 cut(s)	443, 599, 963, 1143, 1494
Bst4CI	ACNGT	2 cut(s)	232, 1296
Bst6I	CTCTTC	4 cut(s)	355, 1164, 1537, 2337
BstACI	GRCGYC	6 cut(s)	114, 164, 314, 347, 731, 782
BstAPI	GCANNNNNTGC	1 cut(s)	2387
BstBAI	YACGTR	3 cut(s)	1871, 1976, 2276
BstBI	TTCGAA	1 cut(s)	401
BstC8I	GCNNGC	6 cut(s)	286, 342, 438, 891, 2070, 2408
BstDEI	CTNAG	4 cut(s)	927, 1041, 1404, 2100
BstDSI	CCRYGG	3 cut(s)	109, 1117, 2073
BstENI	CCTNNNNNAGG	2 cut(s)	1146, 1899
BstF5I	GGATG	3 cut(s)	1417, 1790, 2170
BstFNI	CGCG	3 cut(s)	111, 1461, 2007
BstH2I	RGCGCY	4 cut(s)	117, 167, 734, 838
BstHHI	GCGC	7 cut(s)	116, 166, 733, 837, 1463, 2009, 2053
BstKTI	GATC	4 cut(s)	1507, 1651, 1745, 2194
BstMAI	GTCTC	2 cut(s)	193, 2219
BstMBI	GATC	4 cut(s)	1504, 1648, 1742, 2191
BstNI	CCWGG	5 cut(s)	443, 599, 963, 1143, 1494
BstNSI	RCATGY	1 cut(s)	1568
BstSFI	CTRYAG	2 cut(s)	79, 2136
BstSLI	GKGCMC	2 cut(s)	210, 2419
BstUI	CGCG	3 cut(s)	111, 1461, 2007
BstV1I	GCAGC	6 cut(s)	137, 436, 1660, 2021, 2226, 2377
BstV2I	GAAGAC	3 cut(s)	1130, 1696, 1772
BstXI	CCANNNNNNTGG	2 cut(s)	449, 2080
BsuRI	GGCC	9 cut(s)	309, 440, 505, 538, 766, 1685, 2127, 2301, 2417
BtgI	CCRYGG	3 cut(s)	109, 1117, 2073
BtgZI	GCGATG	1 cut(s)	875
BtrI	CACGTC	1 cut(s)	142
BtsCI	GGATG	3 cut(s)	1417, 1790, 2170
BtsI	GCAGTG	1 cut(s)	76
BtsIMutI	CAGTG	2 cut(s)	76, 1401
Cac8I	GCNNGC	6 cut(s)	286, 342, 438, 891, 2070, 2408
CaiI	CAGNNNCTG	2 cut(s)	1940, 2099
CciI	TCATGA	1 cut(s)	849
CfoI	GCGC	7 cut(s)	116, 166, 733, 837, 1463, 2009, 2053
Cfr10I	RCCGGY	2 cut(s)	340, 906
Cfr13I	GGNCC	8 cut(s)	439, 504, 525, 1264, 2126, 2299, 2415, 2416
Cfr42I	CCGCGG	1 cut(s)	112
Cfr9I	CCCGGG	1 cut(s)	521
CseI	GACGC	4 cut(s)	322, 336, 790, 2013
CsiI	ACCWGGT	1 cut(s)	597
Csp6I	GTAC	3 cut(s)	55, 1193, 2273
CspAI	ACCGGT	1 cut(s)	906
CspCI	CAANNNNNGTGG	2 cut(s)	1155, 1190
CviAII	CATG	6 cut(s)	629, 850, 1243, 1565, 1811, 1823
CviQI	GTAC	3 cut(s)	55, 1193, 2273
DdeI	CTNAG	4 cut(s)	927, 1041, 1404, 2100
DinI	GGCGCC	3 cut(s)	115, 165, 732
DpnI	GATC	4 cut(s)	1506, 1650, 1744, 2193
DpnII	GATC	4 cut(s)	1504, 1648, 1742, 2191
DriI	GACNNNNNGTC	1 cut(s)	318
EaeI	YGGCCR	2 cut(s)	307, 1683
Eam1104I	CTCTTC	4 cut(s)	355, 1164, 1537, 2337
Eam1105I	GACNNNNNGTC	1 cut(s)	318
EarI	CTCTTC	4 cut(s)	355, 1164, 1537, 2337
EciI	GGCGGA	1 cut(s)	858
Ecl136II	GAGCTC	2 cut(s)	333, 1231
Eco130I	CCWWGG	3 cut(s)	1606, 1895, 2302
Eco24I	GRGCYC	4 cut(s)	335, 971, 1233, 2419
Eco31I	GGTCTC	1 cut(s)	193
Eco32I	GATATC	1 cut(s)	775
Eco47I	GGWCC	2 cut(s)	525, 1264
Eco47III	AGCGCT	1 cut(s)	836
Eco53kI	GAGCTC	2 cut(s)	333, 1231
Eco57I	CTGAAG	3 cut(s)	683, 1209, 1962
Eco72I	CACGTG	1 cut(s)	1871
Eco88I	CYCGRG	2 cut(s)	521, 532
EcoICRI	GAGCTC	2 cut(s)	333, 1231
EcoNI	CCTNNNNNAGG	2 cut(s)	1146, 1899
EcoO109I	RGGNCCY	3 cut(s)	1264, 2299, 2416
EcoRI	GAATTC	1 cut(s)	510
EcoRII	CCWGG	5 cut(s)	441, 597, 961, 1141, 1492
EcoRV	GATATC	1 cut(s)	775
EcoT14I	CCWWGG	3 cut(s)	1606, 1895, 2302
EcoT38I	GRGCYC	4 cut(s)	335, 971, 1233, 2419
EgeI	GGCGCC	3 cut(s)	115, 165, 732
EheI	GGCGCC	3 cut(s)	115, 165, 732
ErhI	CCWWGG	3 cut(s)	1606, 1895, 2302
FaeI	CATG	6 cut(s)	632, 853, 1246, 1568, 1814, 1826
FaqI	GGGAC	6 cut(s)	120, 1159, 1277, 1849, 2190, 2211
FatI	CATG	6 cut(s)	628, 849, 1242, 1564, 1810, 1822
FblI	GTMKAC	1 cut(s)	1489
FokI	GGATG	3 cut(s)	1424, 1797, 2177
FriOI	GRGCYC	4 cut(s)	335, 971, 1233, 2419
FspBI	CTAG	4 cut(s)	123, 1052, 1215, 1896
GlaI	GCGC	7 cut(s)	115, 165, 732, 836, 1462, 2008, 2052
GsaI	CCCAGC	1 cut(s)	1182
GsuI	CTGGAG	1 cut(s)	1917
HaeII	RGCGCY	4 cut(s)	117, 167, 734, 838
HaeIII	GGCC	9 cut(s)	309, 440, 505, 538, 766, 1685, 2127, 2301, 2417
HgaI	GACGC	4 cut(s)	322, 336, 790, 2013
HhaI	GCGC	7 cut(s)	116, 166, 733, 837, 1463, 2009, 2053
Hin1I	GRCGYC	6 cut(s)	114, 164, 314, 347, 731, 782
Hin1II	CATG	6 cut(s)	632, 853, 1246, 1568, 1814, 1826
Hin6I	GCGC	7 cut(s)	114, 164, 731, 835, 1461, 2007, 2051
HinP1I	GCGC	7 cut(s)	114, 164, 731, 835, 1461, 2007, 2051
HincII	GTYRAC	2 cut(s)	1033, 1490
HindII	GTYRAC	2 cut(s)	1033, 1490
HindIII	AAGCTT	1 cut(s)	695
HphI	GGTGA	4 cut(s)	674, 1622, 1675, 2351
Hpy166II	GTNNAC	4 cut(s)	1033, 1490, 1603, 1979
Hpy188III	TCNNGA	9 cut(s)	137, 172, 226, 701, 778, 850, 1082, 1340, 2231
Hpy8I	GTNNAC	4 cut(s)	1033, 1490, 1603, 1979
Hpy99I	CGWCG	7 cut(s)	143, 340, 352, 547, 550, 739, 1491
HpyAV	CCTTC	8 cut(s)	169, 376, 601, 1786, 2181, 2330, 2404, 2429
HpyCH4III	ACNGT	2 cut(s)	232, 1296
HpyCH4IV	ACGT	7 cut(s)	25, 141, 548, 1870, 1975, 1981, 2275
HpyF3I	CTNAG	4 cut(s)	927, 1041, 1404, 2100
HpySE526I	ACGT	7 cut(s)	25, 141, 548, 1870, 1975, 1981, 2275
Hsp92I	GRCGYC	6 cut(s)	114, 164, 314, 347, 731, 782
Hsp92II	CATG	6 cut(s)	632, 853, 1246, 1568, 1814, 1826
HspAI	GCGC	7 cut(s)	114, 164, 731, 835, 1461, 2007, 2051
KasI	GGCGCC	3 cut(s)	113, 163, 730
KroI	GCCGGC	1 cut(s)	340
KroNI	GCCGGC	1 cut(s)	342
KspI	CCGCGG	1 cut(s)	112
Kzo9I	GATC	4 cut(s)	1504, 1648, 1742, 2191
LguI	GCTCTTC	1 cut(s)	2337
LmnI	GCTCC	6 cut(s)	276, 504, 652, 842, 1048, 1448
Lsp1109I	GCAGC	6 cut(s)	137, 436, 1660, 2021, 2226, 2377
LweI	GCATC	2 cut(s)	786, 1312
MabI	ACCWGGT	1 cut(s)	597
MaeI	CTAG	4 cut(s)	123, 1052, 1215, 1896
MaeII	ACGT	7 cut(s)	25, 141, 548, 1870, 1975, 1981, 2275
MaeIII	GTNAC	5 cut(s)	74, 569, 1610, 1971, 1987
MalI	GATC	4 cut(s)	1506, 1650, 1744, 2193
MboI	GATC	4 cut(s)	1504, 1648, 1742, 2191
MhlI	GDGCHC	7 cut(s)	210, 335, 971, 1108, 1233, 2311, 2419
MlsI	TGGCCA	1 cut(s)	309
MluNI	TGGCCA	1 cut(s)	309
Mly113I	GGCGCC	3 cut(s)	114, 164, 731
MlyI	GAGTC	6 cut(s)	328, 334, 713, 1150, 2177, 2221
MmeI	TCCRAC	4 cut(s)	53, 552, 630, 687
Mox20I	TGGCCA	1 cut(s)	309
MreI	CGCCGGCG	1 cut(s)	340
MroNI	GCCGGC	1 cut(s)	340
MroXI	GAANNNNTTC	3 cut(s)	200, 1071, 1551
MscI	TGGCCA	1 cut(s)	309
MseI	TTAA	7 cut(s)	588, 639, 2112, 2208, 2360, 2400, 2446
MslI	CAYNNNNRTG	2 cut(s)	1406, 2078
Msp20I	TGGCCA	1 cut(s)	309
MspA1I	CMGCKG	1 cut(s)	111
MvaI	CCWGG	5 cut(s)	443, 599, 963, 1143, 1494
MvnI	CGCG	3 cut(s)	111, 1461, 2007
NaeI	GCCGGC	1 cut(s)	342
NarI	GGCGCC	3 cut(s)	114, 164, 731
NciI	CCSGG	5 cut(s)	507, 522, 523, 657, 1478
NdeII	GATC	4 cut(s)	1504, 1648, 1742, 2191
NgoMIV	GCCGGC	1 cut(s)	340
NlaIII	CATG	6 cut(s)	632, 853, 1246, 1568, 1814, 1826
NmeAIII	GCCGAG	1 cut(s)	342
NmuCI	GTSAC	3 cut(s)	74, 569, 1610
NspI	RCATGY	1 cut(s)	1568
NspV	TTCGAA	1 cut(s)	401
PagI	TCATGA	1 cut(s)	849
PciSI	GCTCTTC	1 cut(s)	2337
PcsI	WCGNNNNNNNCGW	4 cut(s)	164, 320, 344, 1114
PdiI	GCCGGC	1 cut(s)	342
PdmI	GAANNNNTTC	3 cut(s)	200, 1071, 1551
PfeI	GAWTC	7 cut(s)	263, 352, 454, 846, 1078, 1390, 1547
PinAI	ACCGGT	1 cut(s)	906
PleI	GAGTC	6 cut(s)	327, 333, 712, 1150, 2176, 2221
PluTI	GGCGCC	3 cut(s)	117, 167, 734
PmaCI	CACGTG	1 cut(s)	1871
PmlI	CACGTG	1 cut(s)	1871
PpsI	GAGTC	6 cut(s)	327, 333, 712, 1150, 2176, 2221
Ppu21I	YACGTR	3 cut(s)	1871, 1976, 2276
PpuMI	RGGWCCY	1 cut(s)	1264
PshBI	ATTAAT	1 cut(s)	588
PsiI	TTATAA	1 cut(s)	1202
Psp124BI	GAGCTC	2 cut(s)	335, 1233
Psp5II	RGGWCCY	1 cut(s)	1264
Psp6I	CCWGG	5 cut(s)	441, 597, 961, 1141, 1492
PspCI	CACGTG	1 cut(s)	1871
PspFI	CCCAGC	1 cut(s)	1178
PspGI	CCWGG	5 cut(s)	441, 597, 961, 1141, 1492
PspOMI	GGGCCC	1 cut(s)	2415
PspPI	GGNCC	8 cut(s)	439, 504, 525, 1264, 2126, 2299, 2415, 2416
PspPPI	RGGWCCY	1 cut(s)	1264
PstI	CTGCAG	1 cut(s)	83
PstNI	CAGNNNCTG	2 cut(s)	1940, 2099
RsaI	GTAC	3 cut(s)	56, 1194, 2274
RsaNI	GTAC	3 cut(s)	55, 1193, 2273
RseI	CAYNNNNRTG	2 cut(s)	1406, 2078
SacI	GAGCTC	2 cut(s)	335, 1233
SacII	CCGCGG	1 cut(s)	112
SalI	GTCGAC	1 cut(s)	1488
SapI	GCTCTTC	1 cut(s)	2337
SaqAI	TTAA	7 cut(s)	588, 639, 2112, 2208, 2360, 2400, 2446
Sau3AI	GATC	4 cut(s)	1504, 1648, 1742, 2191
Sau96I	GGNCC	8 cut(s)	439, 504, 525, 1264, 2126, 2299, 2415, 2416
SchI	GAGTC	6 cut(s)	328, 334, 713, 1150, 2177, 2221
SduI	GDGCHC	7 cut(s)	210, 335, 971, 1108, 1233, 2311, 2419
SexAI	ACCWGGT	1 cut(s)	597
SfaNI	GCATC	2 cut(s)	786, 1312
SfcI	CTRYAG	2 cut(s)	79, 2136
SfoI	GGCGCC	3 cut(s)	115, 165, 732
Sfr303I	CCGCGG	1 cut(s)	112
SfuI	TTCGAA	1 cut(s)	401
SgrAI	CRCCGGYG	1 cut(s)	340
SgrBI	CCGCGG	1 cut(s)	112
SinI	GGWCC	2 cut(s)	525, 1264
SmaI	CCCGGG	1 cut(s)	523
SmiMI	CAYNNNNRTG	2 cut(s)	1406, 2078
SmlI	CTYRAG	3 cut(s)	644, 800, 2229
SmoI	CTYRAG	3 cut(s)	644, 800, 2229
SspDI	GGCGCC	3 cut(s)	113, 163, 730
SspI	AATATT	1 cut(s)	1305
SspMI	CTAG	4 cut(s)	123, 1052, 1215, 1896
SstI	GAGCTC	2 cut(s)	335, 1233
StyI	CCWWGG	3 cut(s)	1606, 1895, 2302
TaaI	ACNGT	2 cut(s)	232, 1296
TaiI	ACGT	7 cut(s)	28, 144, 551, 1873, 1978, 1984, 2278
TaqI	TCGA	3 cut(s)	350, 401, 1489
TatI	WGTACW	1 cut(s)	54
TauI	GCSGC	4 cut(s)	114, 164, 347, 541
TfiI	GAWTC	7 cut(s)	263, 352, 454, 846, 1078, 1390, 1547
Tru1I	TTAA	7 cut(s)	588, 639, 2112, 2208, 2360, 2400, 2446
Tru9I	TTAA	7 cut(s)	588, 639, 2112, 2208, 2360, 2400, 2446
TscAI	CASTG	2 cut(s)	83, 1408
TseFI	GTSAC	3 cut(s)	74, 569, 1610
TseI	GCWGC	6 cut(s)	150, 424, 1673, 2009, 2239, 2390
Tsp45I	GTSAC	3 cut(s)	74, 569, 1610
TspDTI	ATGAA	9 cut(s)	617, 695, 838, 866, 1683, 1714, 1827, 1951, 2386
TspGWI	ACGGA	3 cut(s)	62, 504, 2090
TspMI	CCCGGG	1 cut(s)	521
TspRI	CASTG	2 cut(s)	83, 1408
VpaK11BI	GGWCC	2 cut(s)	525, 1264
VspI	ATTAAT	1 cut(s)	588
XagI	CCTNNNNNAGG	2 cut(s)	1146, 1899
XapI	RAATTY	3 cut(s)	510, 1067, 1657
XceI	RCATGY	1 cut(s)	1568
XmaI	CCCGGG	1 cut(s)	521
XmaJI	CCTAGG	1 cut(s)	1895
XmiI	GTMKAC	1 cut(s)	1489
XmnI	GAANNNNTTC	3 cut(s)	200, 1071, 1551
XspI	CTAG	4 cut(s)	123, 1052, 1215, 1896

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.