Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0012249

Physical Location & Seq

Genomic Coordinates Reverse (-)

1523041 .. 1523717

Gene Structure 677 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1006200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGAGGATGAAGGGTGCTGGTGTTGTTGGTGTGTACCACCCATTGATTGATGAGAAGCTTGTGAGAAATCTGCATGGGAGAAAGAAGAAAGTGTATGCGTGGACTGTCGATGATGTGGATTCCATGCAAGAAATGTTGTCCGAGCACATTGATGCCGTCGTAACGAGCAACCCAACTGTACTTCAAGGTCTAATGCAAGATATCAAAAGAGAGTGTCTGGAGCACGGTTTTTCCTTATCAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDPD

Protein Analysis

82

Amino Acids

9.18

Weight (kDa)

6.05

Isoelectric Point (pI)

26.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPD	PF03009	8 - 58	8e-07	Glycerophosphoryl diester phosphodiesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71340
fragaria_vesca	FvH4_2g00320
malus_domestica	MD05G1006200.v1.1
prunus_persica	Prupe.8G003500_v2.0.a1 Prupe.8G003500_v2.0.a1 Prupe.8G003500_v2.0.a1 Prupe.8G003500_v2.0.a1 Prupe.8G003500_v2.0.a1 Prupe.8G003500_v2.0.a1
pyrus_communis	pycom05g00140
rosa_chinensis	RchiOBHm_Chr6g0249611
rosa_laevigata	RLG00000015558
rosa_roxburghii	Rroxscaffold_7G00217490
rosa_rugosa	Rorug05G0494100
rosa_samantha	Rh6AG003900 Rh6BG006300 Rh6CG002900 Rh6DG002700
rosa_wichuraiana	Rw6G000430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	35, 180
AgsI	TTSAA	1 cut(s)	185
AluBI	AGCT	1 cut(s)	58
AluI	AGCT	1 cut(s)	58
Alw21I	GWGCWC	2 cut(s)	147, 225
Bbv12I	GWGCWC	2 cut(s)	147, 225
BceAI	ACGGC	1 cut(s)	140
BmsI	GCATC	1 cut(s)	142
BpmI	CTGGAG	1 cut(s)	239
BseGI	GGATG	1 cut(s)	12
BsiHKAI	GWGCWC	2 cut(s)	147, 225
Bsp1286I	GDGCHC	2 cut(s)	147, 225
Bst4CI	ACNGT	3 cut(s)	106, 178, 227
BstF5I	GGATG	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	12
Csp6I	GTAC	2 cut(s)	34, 179
CviAII	CATG	2 cut(s)	74, 124
CviJI	RGCY	1 cut(s)	58
CviKI_1	RGCY	1 cut(s)	58
CviQI	GTAC	2 cut(s)	34, 179
Eco32I	GATATC	1 cut(s)	202
EcoRV	GATATC	1 cut(s)	202
FaeI	CATG	2 cut(s)	77, 127
FaiI	YATR	3 cut(s)	75, 96, 125
FatI	CATG	2 cut(s)	73, 123
FokI	GGATG	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	239
Hin1II	CATG	2 cut(s)	77, 127
HindIII	AAGCTT	1 cut(s)	56
HinfI	GANTC	1 cut(s)	119
Hpy166II	GTNNAC	2 cut(s)	34, 102
Hpy188I	TCNGA	2 cut(s)	142, 241
Hpy188III	TCNNGA	1 cut(s)	218
Hpy8I	GTNNAC	2 cut(s)	34, 102
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	1 cut(s)	4
HpyCH4III	ACNGT	3 cut(s)	106, 178, 227
HpyCH4V	TGCA	3 cut(s)	73, 127, 196
Hsp92II	CATG	2 cut(s)	77, 127
LmnI	GCTCC	1 cut(s)	220
LpnPI	CCDG	2 cut(s)	3, 203
LweI	GCATC	1 cut(s)	142
MaeIII	GTNAC	1 cut(s)	160
MboII	GAAGA	1 cut(s)	97
MhlI	GDGCHC	2 cut(s)	147, 225
MslI	CAYNNNNRTG	1 cut(s)	150
NlaIII	CATG	2 cut(s)	77, 127
PfeI	GAWTC	1 cut(s)	119
RsaI	GTAC	2 cut(s)	35, 180
RsaNI	GTAC	2 cut(s)	34, 179
RseI	CAYNNNNRTG	1 cut(s)	150
SduI	GDGCHC	2 cut(s)	147, 225
SetI	ASST	2 cut(s)	60, 190
SfaNI	GCATC	1 cut(s)	142
SmiMI	CAYNNNNRTG	1 cut(s)	150
TaaI	ACNGT	3 cut(s)	106, 178, 227
TaqI	TCGA	1 cut(s)	108
TatI	WGTACW	1 cut(s)	178
TfiI	GAWTC	1 cut(s)	119
TspDTI	ATGAA	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.