Prupe.8G003500_v2.0.a1

Glycerophosphoryl diester phosphodiesterase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0012249
Physical Location & Seq
Reverse (-)
291407 .. 296403
4997 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G003500.3

Sequence Viewer

Length: 1002 bp
ATGATCCAAATGGCGATCTCAACGAGATTGGGAAGGCGACTGTCCCTCCATCAGAGGCAGCAGCGGTTTGGGTTCGGAGCCTTTCTCTTCAGATTTTCGTCAAAGAGAGTATTTCGTGCGATTCTCATAAGTCTCGTCTTCATCGCTTTTGTCCCTCCCATTTTCTTCTTCTTCAAGCTCAAACGCTTTCACCAGACGCAGTTAAGAAAGTGTGGCTGGCTAAATGAGCCTCCTCTTGTGTGTGCGCATGGGGGTGACTCAAGTAAGGCCTTCCCTAACACGATGGCTGCATATCATTTTGCTCTTCATTCTCAAGTAGACTGCATTGAGATTGACGTTTCTCGTTCTCTGGATGGAGTTCTGCTTGCGCTCCATGACAGGGATTTGCAGCGGTTAACTGGAAACAATGCTTCTAAGGTTGGGTACTTAAGTATGAAAGAGATAAAGTATCTTGGTTCTGTGCATCAATCTGCAAGGAAGTTCCCAGATGAAAATGTTCTTACAATTGAAGAGGCTTTGGAGGTAATTTTAAGTTCAGTCCGGCGGGTGATTCTAGATATAAAGGTTGGGCCTCCATCATATGAAAAAGGGCTTGCAAGCGATGTTCTTTCTGTTGTTAAGAGGATGCAGTGTAAGAATTGCCTAGTATGGGCTAAAAGCGACAATTTAGCAAGGGATGTAATCAAACTATCATCAGATGTCACGGTCGGGTACATTGTTATGATTGATCCGTCTACCAGGGCCAGAACCAACTTACTGAGGATGAAAGGTGCTGGCGTTGTTGGTGTATACCACCCATTGATTGATGAGACGCTTGTGAGAATTCTACATGGGAGAAAGAAGAGAGTATATGCGTGGACTGTTGATGATATGGATTCCATGCAAGAAATGTTGTATGAGCGTGTTGATGCCATTGTTACAAGCAACCCAACTATGCTTCAAGGTCTAATGCAAGATATCAGAACACAGTGTCTGGAGCACGGTTTCTCGTTATCAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GDPD

Protein Analysis

334

Amino Acids

37.78

Weight (kDa)

9.51

Isoelectric Point (pI)

32.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 246
AccI GTMKAC 3 cut(s) 318, 734, 789
AciI CCGC 3 cut(s) 64, 391, 544
AclWI GGATC 1 cut(s) 722
AcsI RAATTY 1 cut(s) 822
AcuI CTGAAG 1 cut(s) 73
AfaI GTAC 2 cut(s) 425, 713
AfiI CCNNNNNNNGG 2 cut(s) 379, 649
AflII CTTAAG 1 cut(s) 427
AgsI TTSAA 3 cut(s) 175, 509, 941
AjnI CCWGG 1 cut(s) 737
AluBI AGCT 1 cut(s) 178
AluI AGCT 1 cut(s) 178
Alw21I GWGCWC 1 cut(s) 981
Alw26I GTCTC 2 cut(s) 137, 803
AlwI GGATC 1 cut(s) 722
AlwNI CAGNNNCTG 1 cut(s) 973
AoxI GGCC 3 cut(s) 267, 569, 741
ApeKI GCWGC 4 cut(s) 58, 61, 287, 388
ApoI RAATTY 1 cut(s) 822
Asp700I GAANNNNTTC 1 cut(s) 495
AspLEI GCGC 2 cut(s) 247, 370
AspS9I GGNCC 2 cut(s) 569, 741
AsuHPI GGTGA 3 cut(s) 182, 266, 559
BaeI ACNNNNGTAYC 2 cut(s) 415, 448
BbsI GAAGAC 1 cut(s) 130
Bbv12I GWGCWC 1 cut(s) 981
BbvI GCAGC 4 cut(s) 70, 73, 274, 400
BccI CCATC 4 cut(s) 57, 277, 347, 583
BciT130I CCWGG 1 cut(s) 739
BcoDI GTCTC 2 cut(s) 137, 803
BfaI CTAG 2 cut(s) 554, 644
BfrI CTTAAG 1 cut(s) 427
BisI GCNGC 4 cut(s) 59, 62, 288, 389
BlsI GCNGC 4 cut(s) 60, 63, 289, 390
Bme1390I CCNGG 1 cut(s) 739
BmgT120I GGNCC 2 cut(s) 569, 741
BmiI GGNNCC 1 cut(s) 79
BmrFI CCNGG 1 cut(s) 739
BmsI GCATC 3 cut(s) 472, 615, 898
BpiI GAAGAC 1 cut(s) 130
BplI GAGNNNNNCTC 2 cut(s) 69, 101
BpmI CTGGAG 1 cut(s) 995
BpuEI CTTGAG 2 cut(s) 244, 297
BsaJI CCNNGG 1 cut(s) 738
BsaXI ACNNNNNCTCC 2 cut(s) 30, 60
Bsc4I CCNNNNNNNGG 2 cut(s) 379, 649
Bse1I ACTGG 1 cut(s) 403
BseBI CCWGG 1 cut(s) 739
BseDI CCNNGG 1 cut(s) 738
BseGI GGATG 4 cut(s) 358, 630, 682, 768
BseLI CCNNNNNNNGG 2 cut(s) 379, 649
BseMII CTCAG 1 cut(s) 749
BseNI ACTGG 1 cut(s) 403
BseRI GAGGAG 1 cut(s) 222
BseXI GCAGC 4 cut(s) 70, 73, 274, 400
Bsh1285I CGRYCG 1 cut(s) 708
BshFI GGCC 3 cut(s) 269, 571, 743
BsiEI CGRYCG 1 cut(s) 708
BsiHKAI GWGCWC 1 cut(s) 981
BsiSI CCGG 1 cut(s) 541
BslFI GGGAC 2 cut(s) 28, 137
BslI CCNNNNNNNGG 2 cut(s) 379, 649
BsmAI GTCTC 2 cut(s) 137, 803
BsmBI CGTCTC 1 cut(s) 803
BsmFI GGGAC 2 cut(s) 28, 137
BsnI GGCC 3 cut(s) 269, 571, 743
Bsp1286I GDGCHC 1 cut(s) 981
Bsp143I GATC 3 cut(s) 3, 15, 727
BspACI CCGC 3 cut(s) 64, 391, 544
BspANI GGCC 3 cut(s) 269, 571, 743
BspCNI CTCAG 1 cut(s) 750
BspLI GGNNCC 1 cut(s) 79
BspPI GGATC 1 cut(s) 722
BspQI GCTCTTC 1 cut(s) 309
BspTI CTTAAG 1 cut(s) 427
BsrI ACTGG 1 cut(s) 403
BssECI CCNNGG 1 cut(s) 738
BssMI GATC 3 cut(s) 3, 15, 727
BssNAI GTATAC 1 cut(s) 790
Bst1107I GTATAC 1 cut(s) 790
Bst2UI CCWGG 1 cut(s) 739
Bst4CI ACNGT 5 cut(s) 42, 706, 862, 969, 983
Bst6I CTCTTC 4 cut(s) 92, 309, 504, 836
BstAFI CTTAAG 1 cut(s) 427
BstC8I GCNNGC 5 cut(s) 218, 366, 594, 598, 775
BstDEI CTNAG 2 cut(s) 414, 758
BstF5I GGATG 4 cut(s) 358, 630, 682, 768
BstHHI GCGC 2 cut(s) 247, 370
BstKTI GATC 3 cut(s) 6, 18, 730
BstMAI GTCTC 2 cut(s) 137, 803
BstMBI GATC 3 cut(s) 3, 15, 727
BstMCI CGRYCG 1 cut(s) 708
BstMWI GCNNNNNNNGC 1 cut(s) 226
BstNI CCWGG 1 cut(s) 739
BstSCI CCNGG 1 cut(s) 737
BstV1I GCAGC 4 cut(s) 70, 73, 274, 400
BstV2I GAAGAC 1 cut(s) 130
BstZ17I GTATAC 1 cut(s) 790
BsuRI GGCC 3 cut(s) 269, 571, 743
BtgZI GCGATG 2 cut(s) 127, 615
BtsCI GGATG 4 cut(s) 358, 630, 682, 768
BtsI GCAGTG 1 cut(s) 635
BtsIMutI CAGTG 2 cut(s) 635, 974
Cac8I GCNNGC 5 cut(s) 218, 366, 594, 598, 775
CaiI CAGNNNCTG 1 cut(s) 973
CfoI GCGC 2 cut(s) 247, 370
Cfr13I GGNCC 2 cut(s) 569, 741
CseI GACGC 2 cut(s) 205, 820
Csp6I GTAC 2 cut(s) 424, 712
CviAII CATG 4 cut(s) 248, 374, 830, 880
CviQI GTAC 2 cut(s) 424, 712
DdeI CTNAG 2 cut(s) 414, 758
DpnI GATC 3 cut(s) 5, 17, 729
DpnII GATC 3 cut(s) 3, 15, 727
Eam1104I CTCTTC 4 cut(s) 92, 309, 504, 836
EarI CTCTTC 4 cut(s) 92, 309, 504, 836
Eco147I AGGCCT 1 cut(s) 269
Eco32I GATATC 1 cut(s) 958
Eco57I CTGAAG 1 cut(s) 73
EcoRI GAATTC 1 cut(s) 822
EcoRII CCWGG 1 cut(s) 737
EcoRV GATATC 1 cut(s) 958
Esp3I CGTCTC 1 cut(s) 803
FaeI CATG 4 cut(s) 251, 377, 833, 883
FaqI GGGAC 2 cut(s) 28, 137
FatI CATG 4 cut(s) 247, 373, 829, 879
FauI CCCGC 1 cut(s) 537
FauNDI CATATG 1 cut(s) 580
FblI GTMKAC 3 cut(s) 318, 734, 789
Fnu4HI GCNGC 4 cut(s) 59, 62, 288, 389
FokI GGATG 4 cut(s) 365, 637, 689, 775
Fsp4HI GCNGC 4 cut(s) 59, 62, 288, 389
FspAI RTGCGCAY 1 cut(s) 246
FspBI CTAG 2 cut(s) 554, 644
FspI TGCGCA 1 cut(s) 246
GlaI GCGC 2 cut(s) 246, 369
GluI GCNGC 4 cut(s) 59, 62, 288, 389
GsuI CTGGAG 1 cut(s) 995
HaeIII GGCC 3 cut(s) 269, 571, 743
HapII CCGG 1 cut(s) 541
HgaI GACGC 2 cut(s) 205, 820
HhaI GCGC 2 cut(s) 247, 370
Hin1II CATG 4 cut(s) 251, 377, 833, 883
Hin6I GCGC 2 cut(s) 245, 368
HinP1I GCGC 2 cut(s) 245, 368
HincII GTYRAC 1 cut(s) 396
HindII GTYRAC 1 cut(s) 396
HinfI GANTC 4 cut(s) 121, 257, 550, 875
HpaI GTTAAC 1 cut(s) 396
HpaII CCGG 1 cut(s) 541
HphI GGTGA 3 cut(s) 182, 266, 559
Hpy166II GTNNAC 5 cut(s) 319, 396, 735, 790, 858
Hpy188I TCNGA 6 cut(s) 54, 77, 92, 697, 962, 997
Hpy188III TCNNGA 3 cut(s) 350, 554, 974
Hpy8I GTNNAC 5 cut(s) 319, 396, 735, 790, 858
HpyAV CCTTC 2 cut(s) 27, 280
HpyCH4III ACNGT 5 cut(s) 42, 706, 862, 969, 983
HpyCH4IV ACGT 1 cut(s) 336
HpyCH4V TGCA 9 cut(s) 290, 324, 388, 463, 473, 596, 628, 883, 952
HpyF10VI GCNNNNNNNGC 1 cut(s) 226
HpyF3I CTNAG 2 cut(s) 414, 758
HpySE526I ACGT 1 cut(s) 336
Hsp92II CATG 4 cut(s) 251, 377, 833, 883
HspAI GCGC 2 cut(s) 245, 368
KspAI GTTAAC 1 cut(s) 396
Kzo9I GATC 3 cut(s) 3, 15, 727
LguI GCTCTTC 1 cut(s) 309
LmnI GCTCC 3 cut(s) 77, 375, 976
Lsp1109I GCAGC 4 cut(s) 70, 73, 274, 400
LweI GCATC 3 cut(s) 472, 615, 898
MaeI CTAG 2 cut(s) 554, 644
MaeII ACGT 1 cut(s) 336
MaeIII GTNAC 3 cut(s) 254, 700, 916
MalI GATC 3 cut(s) 5, 17, 729
MboI GATC 3 cut(s) 3, 15, 727
MboII GAAGA 8 cut(s) 79, 130, 157, 160, 163, 296, 521, 853
MfeI CAATTG 1 cut(s) 504
MhlI GDGCHC 1 cut(s) 981
MluCI AATT 5 cut(s) 504, 525, 637, 664, 822
MlyI GAGTC 1 cut(s) 251
MroXI GAANNNNTTC 1 cut(s) 495
MseI TTAA 5 cut(s) 203, 395, 428, 530, 618
MslI CAYNNNNRTG 2 cut(s) 252, 719
MspA1I CMGCKG 2 cut(s) 64, 391
MspCI CTTAAG 1 cut(s) 427
MspI CCGG 1 cut(s) 541
MspR9I CCNGG 1 cut(s) 739
MunI CAATTG 1 cut(s) 504
MvaI CCWGG 1 cut(s) 739
MwoI GCNNNNNNNGC 1 cut(s) 226
NdeI CATATG 1 cut(s) 580
NdeII GATC 3 cut(s) 3, 15, 727
NlaIII CATG 4 cut(s) 251, 377, 833, 883
NlaIV GGNNCC 1 cut(s) 79
NmuCI GTSAC 2 cut(s) 254, 700
NsbI TGCGCA 1 cut(s) 246
PceI AGGCCT 1 cut(s) 269
PciSI GCTCTTC 1 cut(s) 309
PdmI GAANNNNTTC 1 cut(s) 495
PfeI GAWTC 3 cut(s) 121, 550, 875
PkrI GCNGC 4 cut(s) 60, 63, 289, 390
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
Psp6I CCWGG 1 cut(s) 737
PspGI CCWGG 1 cut(s) 737
PspN4I GGNNCC 1 cut(s) 79
PspPI GGNCC 2 cut(s) 569, 741
PstNI CAGNNNCTG 1 cut(s) 973
RsaI GTAC 2 cut(s) 425, 713
RsaNI GTAC 2 cut(s) 424, 712
RseI CAYNNNNRTG 2 cut(s) 252, 719
SapI GCTCTTC 1 cut(s) 309
SaqAI TTAA 5 cut(s) 203, 395, 428, 530, 618
SatI GCNGC 4 cut(s) 59, 62, 288, 389
Sau3AI GATC 3 cut(s) 3, 15, 727
Sau96I GGNCC 2 cut(s) 569, 741
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 739
SduI GDGCHC 1 cut(s) 981
SetI ASST 7 cut(s) 180, 339, 420, 525, 567, 772, 946
SfaNI GCATC 3 cut(s) 472, 615, 898
SmiMI CAYNNNNRTG 2 cut(s) 252, 719
SmlI CTYRAG 3 cut(s) 259, 312, 427
SmoI CTYRAG 3 cut(s) 259, 312, 427
Sse9I AATT 5 cut(s) 504, 525, 637, 664, 822
SseBI AGGCCT 1 cut(s) 269
SsiI CCGC 3 cut(s) 64, 391, 544
SspMI CTAG 2 cut(s) 554, 644
StuI AGGCCT 1 cut(s) 269
StyD4I CCNGG 1 cut(s) 737
TaaI ACNGT 5 cut(s) 42, 706, 862, 969, 983
TaiI ACGT 1 cut(s) 339
TasI AATT 5 cut(s) 504, 525, 637, 664, 822
TfiI GAWTC 3 cut(s) 121, 550, 875
Tru1I TTAA 5 cut(s) 203, 395, 428, 530, 618
Tru9I TTAA 5 cut(s) 203, 395, 428, 530, 618
TscAI CASTG 2 cut(s) 635, 974
TseFI GTSAC 2 cut(s) 254, 700
TseI GCWGC 4 cut(s) 58, 61, 287, 388
Tsp45I GTSAC 2 cut(s) 254, 700
TspDTI ATGAA 6 cut(s) 130, 296, 449, 504, 597, 779
TspGWI ACGGA 1 cut(s) 720
TspRI CASTG 2 cut(s) 635, 974
Vha464I CTTAAG 1 cut(s) 427
XapI RAATTY 1 cut(s) 822
XbaI TCTAGA 1 cut(s) 553
XmiI GTMKAC 3 cut(s) 318, 734, 789
XmnI GAANNNNTTC 1 cut(s) 495
XspI CTAG 2 cut(s) 554, 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.