Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0012249

Physical Location & Seq

Genomic Coordinates Reverse (-)

169229 .. 173433

Gene Structure 4205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g00140.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGTGGATGTTTCAGGTGAGTACGAGTCGTATGCCCAGAATGGCGATCTCAACGAGAGTTGGGAGGAGGCAAGCGTTGCTGCATCAGAGTCTTCAGAGACGGCAGCAGTGGAGATTTTCTTCAAAGAGAGTCTTGTTTCGCGCGATTCTCGTAAGCGTGGCCTTCATCGCTTTTGTCCCTCCCATTTTCTTCCTCTTCAGACTCAAACTCTTTCATCAGATGCAGTCGAGAAAGTGTGGTTGGCTAAATGAGCCTCCTCTTGTATGTGCGCACGGAGGTGACTCTAGTAAGGCCTTTCCTAACACGATGGCTGCATATCGTTTTGCTCTTCACTCTCAAGTCGACTGCATTGAGATTGATGTTTCTCGTTCTTTAGATGGAGTTTTGCTTGCGCTCCATGACAGGGATTTGCAGAGGATAACTGGAAACAATACTTCTAAGGTTGGGTACTTAAGTATGAAAGAGATAAAAGATCTTGGTTCCATGGATCATTCTGGAAAGGTCCCTGATAAAAATATTCTTACAATTGAAGAGGCTTTGGAGTTAGTTTCAGGTTCAGTTCGGCAGGTGATTCTAGATGTAAAGGTCGGGCCTCCCTCATTTGAAAAAGGGCTTGCTAAGGATGTACTTTCTGTTGTTAAGAGGGTGCAGTGTAAGAACTGCCTTGTATGGGCTAAAAGTGACAATTTAGCAAGGGATGTAATCAGACTCTCATCAGATGTCACGGTCGGGTACATTGTTATGATGGATCCGTTGACCGGGGCCAGAAGCAACTTACTGAGGATGACGGGTGCTGGTGTTGTTGGTGTGTACCACCCATTGATTGATGAGAAGCTTGTGAGAATTCTGCATGGGAGAAAGAAGAAAGTGTATGCGTGGACTGTCGATGATGTGGATTCCATGCAAGAAATGTTGTCTGAGCACATTGATGCCGTCGTAACGAGCAACCCAACTGTACTTCAAGGTATAATGCAAGATATCAAAAGAGAGTGTCTGGAGCACGGTTTTTCCTTATCAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDPD

Protein Analysis

341

Amino Acids

38.29

Weight (kDa)

9.45

Isoelectric Point (pI)

40.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71340
fragaria_vesca	FvH4_2g00320
malus_domestica	MD05G1006200.v1.1
prunus_persica	Prupe.8G003500_v2.0.a1 Prupe.8G003500_v2.0.a1 Prupe.8G003500_v2.0.a1 Prupe.8G003500_v2.0.a1 Prupe.8G003500_v2.0.a1 Prupe.8G003500_v2.0.a1
pyrus_communis	pycom05g00140
rosa_chinensis	RchiOBHm_Chr6g0249611
rosa_laevigata	RLG00000015558
rosa_roxburghii	Rroxscaffold_7G00217490
rosa_rugosa	Rorug05G0494100
rosa_samantha	Rh6AG003900 Rh6BG006300 Rh6CG002900 Rh6DG002700
rosa_wichuraiana	Rw6G000430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	556
Acc16I	TGCGCA	1 cut(s)	270
Acc36I	ACCTGC	1 cut(s)	556
AccI	GTMKAC	1 cut(s)	342
AccII	CGCG	2 cut(s)	141, 143
AclWI	GGATC	3 cut(s)	495, 743, 756
AcsI	RAATTY	1 cut(s)	843
AcuI	CTGAAG	2 cut(s)	77, 181
AfaI	GTAC	6 cut(s)	22, 449, 627, 734, 812, 957
AfiI	CCNNNNNNNGG	3 cut(s)	403, 670, 758
AflII	CTTAAG	1 cut(s)	451
AgsI	TTSAA	4 cut(s)	123, 530, 605, 962
AjuI	GAANNNNNNNTTGG	2 cut(s)	223, 255
AleI	CACNNNNGTG	1 cut(s)	276
AluBI	AGCT	1 cut(s)	835
AluI	AGCT	1 cut(s)	835
Alw21I	GWGCWC	2 cut(s)	924, 1002
Alw26I	GTCTC	1 cut(s)	91
AlwI	GGATC	3 cut(s)	495, 743, 756
AoxI	GGCC	4 cut(s)	159, 291, 590, 762
ApeKI	GCWGC	3 cut(s)	79, 103, 311
ApoI	RAATTY	1 cut(s)	843
AspLEI	GCGC	3 cut(s)	143, 271, 394
AspS9I	GGNCC	3 cut(s)	502, 590, 762
AsuC2I	CCSGG	1 cut(s)	760
AsuHPI	GGTGA	3 cut(s)	28, 290, 580
AvaII	GGWCC	1 cut(s)	502
BaeI	ACNNNNGTAYC	2 cut(s)	439, 472
BamHI	GGATCC	1 cut(s)	748
BbsI	GAAGAC	1 cut(s)	83
Bbv12I	GWGCWC	2 cut(s)	924, 1002
BbvI	GCAGC	3 cut(s)	66, 115, 298
BccI	CCATC	3 cut(s)	301, 371, 739
BceAI	ACGGC	2 cut(s)	116, 917
BcgI	CGANNNNNNTGC	2 cut(s)	13, 47
BcnI	CCSGG	1 cut(s)	760
BcoDI	GTCTC	1 cut(s)	91
BfaI	CTAG	2 cut(s)	285, 575
BfrI	CTTAAG	1 cut(s)	451
BfuAI	ACCTGC	1 cut(s)	556
BglII	AGATCT	1 cut(s)	472
BisI	GCNGC	3 cut(s)	80, 104, 312
BlsI	GCNGC	3 cut(s)	81, 105, 313
Bme1390I	CCNGG	1 cut(s)	760
Bme18I	GGWCC	1 cut(s)	502
BmgT120I	GGNCC	3 cut(s)	502, 590, 762
BmiI	GGNNCC	4 cut(s)	481, 504, 750, 763
BmrFI	CCNGG	1 cut(s)	760
BmsI	GCATC	3 cut(s)	91, 210, 919
BpiI	GAAGAC	1 cut(s)	83
BpmI	CTGGAG	1 cut(s)	1016
Bpu10I	CCTNAGC	1 cut(s)	618
BpuEI	CTTGAG	1 cut(s)	321
BpuMI	CCSGG	1 cut(s)	760
BsaJI	CCNNGG	2 cut(s)	483, 759
Bsc4I	CCNNNNNNNGG	3 cut(s)	403, 670, 758
Bse1I	ACTGG	1 cut(s)	427
BseDI	CCNNGG	2 cut(s)	483, 759
BseGI	GGATG	4 cut(s)	12, 628, 703, 789
BseLI	CCNNNNNNNGG	3 cut(s)	403, 670, 758
BseMII	CTCAG	2 cut(s)	770, 909
BseNI	ACTGG	1 cut(s)	427
BseRI	GAGGAG	2 cut(s)	79, 246
BseXI	GCAGC	3 cut(s)	66, 115, 298
BsgI	GTGCAG	1 cut(s)	668
Bsh1236I	CGCG	2 cut(s)	141, 143
Bsh1285I	CGRYCG	1 cut(s)	729
BshFI	GGCC	4 cut(s)	161, 293, 592, 764
BsiEI	CGRYCG	1 cut(s)	729
BsiHKAI	GWGCWC	2 cut(s)	924, 1002
BsiSI	CCGG	1 cut(s)	759
BslFI	GGGAC	2 cut(s)	161, 488
BslI	CCNNNNNNNGG	3 cut(s)	403, 670, 758
BsmAI	GTCTC	1 cut(s)	91
BsmBI	CGTCTC	1 cut(s)	91
BsmFI	GGGAC	2 cut(s)	161, 488
BsnI	GGCC	4 cut(s)	161, 293, 592, 764
Bsp1286I	GDGCHC	2 cut(s)	924, 1002
Bsp143I	GATC	4 cut(s)	45, 472, 487, 748
Bsp19I	CCATGG	1 cut(s)	483
BspANI	GGCC	4 cut(s)	161, 293, 592, 764
BspCNI	CTCAG	2 cut(s)	771, 910
BspFNI	CGCG	2 cut(s)	141, 143
BspLI	GGNNCC	4 cut(s)	481, 504, 750, 763
BspMI	ACCTGC	1 cut(s)	556
BspPI	GGATC	3 cut(s)	495, 743, 756
BspQI	GCTCTTC	1 cut(s)	333
BspTI	CTTAAG	1 cut(s)	451
BsrI	ACTGG	1 cut(s)	427
BssECI	CCNNGG	2 cut(s)	483, 759
BssMI	GATC	4 cut(s)	45, 472, 487, 748
BssT1I	CCWWGG	1 cut(s)	483
Bst4CI	ACNGT	4 cut(s)	727, 883, 955, 1004
Bst6I	CTCTTC	3 cut(s)	200, 333, 525
BstAFI	CTTAAG	1 cut(s)	451
BstAPI	GCANNNNNTGC	1 cut(s)	76
BstC8I	GCNNGC	3 cut(s)	72, 390, 615
BstDEI	CTNAG	4 cut(s)	438, 618, 779, 918
BstDSI	CCRYGG	1 cut(s)	483
BstF5I	GGATG	4 cut(s)	12, 628, 703, 789
BstFNI	CGCG	2 cut(s)	141, 143
BstHHI	GCGC	3 cut(s)	143, 271, 394
BstKTI	GATC	4 cut(s)	48, 475, 490, 751
BstMAI	GTCTC	1 cut(s)	91
BstMBI	GATC	4 cut(s)	45, 472, 487, 748
BstMCI	CGRYCG	1 cut(s)	729
BstMWI	GCNNNNNNNGC	3 cut(s)	76, 167, 250
BstSCI	CCNGG	1 cut(s)	758
BstUI	CGCG	2 cut(s)	141, 143
BstV1I	GCAGC	3 cut(s)	66, 115, 298
BstV2I	GAAGAC	1 cut(s)	83
BstX2I	RGATCY	2 cut(s)	472, 748
BstYI	RGATCY	2 cut(s)	472, 748
BsuRI	GGCC	4 cut(s)	161, 293, 592, 764
BtgI	CCRYGG	1 cut(s)	483
BtgZI	GCGATG	1 cut(s)	151
BtsCI	GGATG	4 cut(s)	12, 628, 703, 789
BtsI	GCAGTG	2 cut(s)	113, 656
BtsIMutI	CAGTG	2 cut(s)	113, 656
BveI	ACCTGC	1 cut(s)	556
Cac8I	GCNNGC	3 cut(s)	72, 390, 615
CfoI	GCGC	3 cut(s)	143, 271, 394
Cfr13I	GGNCC	3 cut(s)	502, 590, 762
Csp6I	GTAC	6 cut(s)	21, 448, 626, 733, 811, 956
CviAII	CATG	4 cut(s)	398, 484, 851, 901
CviQI	GTAC	6 cut(s)	21, 448, 626, 733, 811, 956
DdeI	CTNAG	4 cut(s)	438, 618, 779, 918
DpnI	GATC	4 cut(s)	47, 474, 489, 750
DpnII	GATC	4 cut(s)	45, 472, 487, 748
Eam1104I	CTCTTC	3 cut(s)	200, 333, 525
EarI	CTCTTC	3 cut(s)	200, 333, 525
Eco130I	CCWWGG	1 cut(s)	483
Eco147I	AGGCCT	1 cut(s)	293
Eco32I	GATATC	1 cut(s)	979
Eco47I	GGWCC	1 cut(s)	502
Eco57I	CTGAAG	2 cut(s)	77, 181
EcoO109I	RGGNCCY	1 cut(s)	502
EcoRI	GAATTC	1 cut(s)	843
EcoRV	GATATC	1 cut(s)	979
EcoT14I	CCWWGG	1 cut(s)	483
ErhI	CCWWGG	1 cut(s)	483
Esp3I	CGTCTC	1 cut(s)	91
FaeI	CATG	4 cut(s)	401, 487, 854, 904
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FaqI	GGGAC	2 cut(s)	161, 488
FatI	CATG	4 cut(s)	397, 483, 850, 900
FblI	GTMKAC	1 cut(s)	342
Fnu4HI	GCNGC	3 cut(s)	80, 104, 312
FokI	GGATG	4 cut(s)	19, 635, 710, 796
Fsp4HI	GCNGC	3 cut(s)	80, 104, 312
FspAI	RTGCGCAY	1 cut(s)	270
FspBI	CTAG	2 cut(s)	285, 575
FspI	TGCGCA	1 cut(s)	270
GlaI	GCGC	3 cut(s)	142, 270, 393
GluI	GCNGC	3 cut(s)	80, 104, 312
GsuI	CTGGAG	1 cut(s)	1016
HaeIII	GGCC	4 cut(s)	161, 293, 592, 764
HapII	CCGG	1 cut(s)	759
HhaI	GCGC	3 cut(s)	143, 271, 394
Hin1II	CATG	4 cut(s)	401, 487, 854, 904
Hin6I	GCGC	3 cut(s)	141, 269, 392
HinP1I	GCGC	3 cut(s)	141, 269, 392
HincII	GTYRAC	2 cut(s)	343, 756
HindII	GTYRAC	2 cut(s)	343, 756
HindIII	AAGCTT	1 cut(s)	833
HinfI	GANTC	9 cut(s)	25, 88, 129, 145, 201, 281, 571, 708, 896
HpaII	CCGG	1 cut(s)	759
HphI	GGTGA	3 cut(s)	28, 290, 580
Hpy166II	GTNNAC	4 cut(s)	343, 756, 811, 879
Hpy188I	TCNGA	8 cut(s)	87, 96, 200, 219, 707, 718, 919, 1018
Hpy188III	TCNNGA	4 cut(s)	228, 495, 575, 995
Hpy8I	GTNNAC	4 cut(s)	343, 756, 811, 879
Hpy99I	CGWCG	1 cut(s)	938
HpyAV	CCTTC	1 cut(s)	172
HpyCH4III	ACNGT	4 cut(s)	727, 883, 955, 1004
HpyCH4V	TGCA	9 cut(s)	82, 223, 314, 348, 412, 649, 850, 904, 973
HpyF10VI	GCNNNNNNNGC	3 cut(s)	76, 167, 250
HpyF3I	CTNAG	4 cut(s)	438, 618, 779, 918
Hsp92II	CATG	4 cut(s)	401, 487, 854, 904
HspAI	GCGC	3 cut(s)	141, 269, 392
Kzo9I	GATC	4 cut(s)	45, 472, 487, 748
LguI	GCTCTTC	1 cut(s)	333
LmnI	GCTCC	2 cut(s)	399, 997
Lsp1109I	GCAGC	3 cut(s)	66, 115, 298
LweI	GCATC	3 cut(s)	91, 210, 919
MaeI	CTAG	2 cut(s)	285, 575
MaeIII	GTNAC	4 cut(s)	278, 680, 721, 937
MalI	GATC	4 cut(s)	47, 474, 489, 750
MboI	GATC	4 cut(s)	45, 472, 487, 748
MboII	GAAGA	7 cut(s)	83, 111, 181, 187, 320, 542, 874
MfeI	CAATTG	1 cut(s)	525
MflI	RGATCY	2 cut(s)	472, 748
MhlI	GDGCHC	2 cut(s)	924, 1002
MluCI	AATT	3 cut(s)	525, 685, 843
MlyI	GAGTC	6 cut(s)	34, 97, 138, 195, 275, 702
MseI	TTAA	2 cut(s)	452, 639
MslI	CAYNNNNRTG	3 cut(s)	276, 740, 927
MspCI	CTTAAG	1 cut(s)	451
MspI	CCGG	1 cut(s)	759
MspR9I	CCNGG	1 cut(s)	760
MunI	CAATTG	1 cut(s)	525
MvnI	CGCG	2 cut(s)	141, 143
MwoI	GCNNNNNNNGC	3 cut(s)	76, 167, 250
NciI	CCSGG	1 cut(s)	760
NcoI	CCATGG	1 cut(s)	483
NdeII	GATC	4 cut(s)	45, 472, 487, 748
NlaIII	CATG	4 cut(s)	401, 487, 854, 904
NlaIV	GGNNCC	4 cut(s)	481, 504, 750, 763
NmuCI	GTSAC	3 cut(s)	278, 680, 721
NsbI	TGCGCA	1 cut(s)	270
OliI	CACNNNNGTG	1 cut(s)	276
PaqCI	CACCTGC	1 cut(s)	556
PceI	AGGCCT	1 cut(s)	293
PciSI	GCTCTTC	1 cut(s)	333
PfeI	GAWTC	3 cut(s)	145, 571, 896
PkrI	GCNGC	3 cut(s)	81, 105, 313
PleI	GAGTC	6 cut(s)	33, 96, 137, 195, 275, 702
PpsI	GAGTC	6 cut(s)	33, 96, 137, 195, 275, 702
PpuMI	RGGWCCY	1 cut(s)	502
Psp5II	RGGWCCY	1 cut(s)	502
PspN4I	GGNNCC	4 cut(s)	481, 504, 750, 763
PspPI	GGNCC	3 cut(s)	502, 590, 762
PspPPI	RGGWCCY	1 cut(s)	502
PsuI	RGATCY	2 cut(s)	472, 748
RsaI	GTAC	6 cut(s)	22, 449, 627, 734, 812, 957
RsaNI	GTAC	6 cut(s)	21, 448, 626, 733, 811, 956
RseI	CAYNNNNRTG	3 cut(s)	276, 740, 927
SalI	GTCGAC	1 cut(s)	341
SapI	GCTCTTC	1 cut(s)	333
SaqAI	TTAA	2 cut(s)	452, 639
SatI	GCNGC	3 cut(s)	80, 104, 312
Sau3AI	GATC	4 cut(s)	45, 472, 487, 748
Sau96I	GGNCC	3 cut(s)	502, 590, 762
SchI	GAGTC	6 cut(s)	34, 97, 138, 195, 275, 702
ScrFI	CCNGG	1 cut(s)	760
SduI	GDGCHC	2 cut(s)	924, 1002
SetI	ASST	9 cut(s)	18, 280, 444, 504, 556, 570, 588, 837, 967
SfaNI	GCATC	3 cut(s)	91, 210, 919
SinI	GGWCC	1 cut(s)	502
SmiMI	CAYNNNNRTG	3 cut(s)	276, 740, 927
SmlI	CTYRAG	2 cut(s)	336, 451
SmoI	CTYRAG	2 cut(s)	336, 451
Sse9I	AATT	3 cut(s)	525, 685, 843
SseBI	AGGCCT	1 cut(s)	293
SspI	AATATT	1 cut(s)	517
SspMI	CTAG	2 cut(s)	285, 575
StuI	AGGCCT	1 cut(s)	293
StyD4I	CCNGG	1 cut(s)	758
StyI	CCWWGG	1 cut(s)	483
TaaI	ACNGT	4 cut(s)	727, 883, 955, 1004
TaqI	TCGA	3 cut(s)	227, 342, 885
TasI	AATT	3 cut(s)	525, 685, 843
TatI	WGTACW	2 cut(s)	625, 955
TfiI	GAWTC	3 cut(s)	145, 571, 896
Tru1I	TTAA	2 cut(s)	452, 639
Tru9I	TTAA	2 cut(s)	452, 639
TscAI	CASTG	2 cut(s)	113, 656
TseFI	GTSAC	3 cut(s)	278, 680, 721
TseI	GCWGC	3 cut(s)	79, 103, 311
Tsp45I	GTSAC	3 cut(s)	278, 680, 721
TspDTI	ATGAA	3 cut(s)	154, 203, 473
TspGWI	ACGGA	2 cut(s)	288, 741
TspRI	CASTG	2 cut(s)	113, 656
Vha464I	CTTAAG	1 cut(s)	451
VpaK11BI	GGWCC	1 cut(s)	502
XapI	RAATTY	1 cut(s)	843
XbaI	TCTAGA	1 cut(s)	574
XmiI	GTMKAC	1 cut(s)	342
XspI	CTAG	2 cut(s)	285, 575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.