AT1G71450

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013884
Physical Location & Seq
Forward (+)
26927012 .. 26928056
1045 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G71450.1

Sequence Viewer

Length: 552 bp
ATGGCTGGTCTTAGGAATTCCGGTAACAGCGACAAAGCGCAAAACGATGGCAAAGGTGTACCATCTGCCTACAGAGGAGTCCGGAAGAGAAAATGGGGGAAATGGGTGTCTGAAATCCGTGAACCGGGGACCAAGAACCGTATCTGGCTAGGCAGTTTCGAGACTCCTGAAATGGCTGCAACCGCATACGACGTGGCAGCATTTCATTTCAGAGGGAGAGAAGCTCGTCTCAACTTCCCTGAGCTCGCCAGCAGCCTTCCACGTCCTGCAGACTCTAGCTCAGACAGCATTCGCATGGCAGTTCATGAGGCAACACTCTGCCGCACCACCGAAGGAACAGAGTCAGCCATGCAAGTGGACAGCTCAAGCTCCTCCAATGTAGCTCCAACAATGGTCAGACTCTCGCCCAGGGAAATTCAAGCGATCAACGAGTCAACTTTGGGATCTCCTACTACAATGATGCATTCAACATACGACCCTATGGAGTTTGCTAATGATGTGGAGATGAATGCTTGGGAAACATACCAGAGTGACTTTCTTTGGGACCCTTAA

Protein Analysis

183

Amino Acids

20.32

Weight (kDa)

5.44

Isoelectric Point (pI)

47.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 23 - 72 9.7e-13 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013884)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71450
fragaria_vesca FvH4_5g33220
malus_domestica MD08G1213600.v1.1 MD15G1396900.v1.1
prunus_persica Prupe.1G545700_v2.0.a1
pyrus_communis pycom08g18340
rosa_chinensis RchiOBHm_Chr7g0231631
rosa_laevigata RLG00000001404
rosa_multiflora Rmu_sc0003063.1_g000032 Rmu_sc0004618.1_g000053
rosa_roxburghii Rroxscaffold_3G00229000
rosa_rugosa Rorug07G0267800
rosa_samantha Rh7AG422300 Rh7BG396700 Rh7CG442600 Rh7DG414700
rosa_wichuraiana Rw7G034820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 81
AciI CCGC 2 cut(s) 183, 322
AclWI GGATC 1 cut(s) 451
AcsI RAATTY 2 cut(s) 16, 414
AfaI GTAC 1 cut(s) 60
AfiI CCNNNNNNNGG 1 cut(s) 124
AgsI TTSAA 2 cut(s) 419, 468
AjiI CACGTC 2 cut(s) 193, 263
AjnI CCWGG 1 cut(s) 407
AluBI AGCT 6 cut(s) 224, 244, 279, 363, 369, 383
AluI AGCT 6 cut(s) 224, 244, 279, 363, 369, 383
Alw21I GWGCWC 1 cut(s) 246
Alw26I GTCTC 2 cut(s) 155, 233
AlwI GGATC 1 cut(s) 451
Aor13HI TCCGGA 1 cut(s) 81
ApeKI GCWGC 3 cut(s) 176, 197, 252
ApoI RAATTY 2 cut(s) 16, 414
AspLEI GCGC 1 cut(s) 40
AspS9I GGNCC 2 cut(s) 129, 544
AsuC2I CCSGG 1 cut(s) 126
AvaII GGWCC 2 cut(s) 129, 544
BanII GRGCYC 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 3 cut(s) 163, 209, 264
BccI CCATC 2 cut(s) 41, 70
BciT130I CCWGG 1 cut(s) 409
BcnI CCSGG 1 cut(s) 126
BcoDI GTCTC 2 cut(s) 155, 233
BfaI CTAG 2 cut(s) 149, 276
BfmI CTRYAG 2 cut(s) 70, 267
BisI GCNGC 4 cut(s) 177, 198, 253, 322
BlsI GCNGC 4 cut(s) 178, 199, 254, 323
Bme1390I CCNGG 2 cut(s) 126, 409
Bme18I GGWCC 2 cut(s) 129, 544
BmgBI CACGTC 2 cut(s) 193, 263
BmgT120I GGNCC 2 cut(s) 129, 544
BmiI GGNNCC 3 cut(s) 130, 545, 546
BmrFI CCNGG 2 cut(s) 126, 409
BmsI GCATC 1 cut(s) 450
BplI GAGNNNNNCTC 2 cut(s) 208, 240
Bpu10I CCTNAGC 1 cut(s) 240
BpuEI CTTGAG 1 cut(s) 349
BpuMI CCSGG 1 cut(s) 126
BsaJI CCNNGG 3 cut(s) 125, 407, 408
BsaWI WCCGGW 2 cut(s) 20, 81
Bsc4I CCNNNNNNNGG 1 cut(s) 124
BseAI TCCGGA 1 cut(s) 81
BseBI CCWGG 1 cut(s) 409
BseDI CCNNGG 3 cut(s) 125, 407, 408
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMII CTCAG 2 cut(s) 231, 294
BseRI GAGGAG 2 cut(s) 90, 361
BseXI GCAGC 3 cut(s) 163, 209, 264
BsiHKAI GWGCWC 1 cut(s) 246
BsiSI CCGG 3 cut(s) 21, 82, 125
BslFI GGGAC 1 cut(s) 142
BslI CCNNNNNNNGG 1 cut(s) 124
BsmAI GTCTC 2 cut(s) 155, 233
BsmBI CGTCTC 1 cut(s) 233
BsmFI GGGAC 1 cut(s) 142
BsmI GAATGC 3 cut(s) 288, 463, 514
Bsp1286I GDGCHC 1 cut(s) 246
Bsp13I TCCGGA 1 cut(s) 81
Bsp143I GATC 2 cut(s) 423, 443
BspACI CCGC 2 cut(s) 183, 322
BspCNI CTCAG 2 cut(s) 232, 293
BspEI TCCGGA 1 cut(s) 81
BspHI TCATGA 1 cut(s) 304
BspLI GGNNCC 3 cut(s) 130, 545, 546
BspMAI CTGCAG 1 cut(s) 271
BspPI GGATC 1 cut(s) 451
BssECI CCNNGG 3 cut(s) 125, 407, 408
BssMI GATC 2 cut(s) 423, 443
Bst2UI CCWGG 1 cut(s) 409
Bst4CI ACNGT 1 cut(s) 140
Bst6I CTCTTC 1 cut(s) 80
BstC8I GCNNGC 2 cut(s) 246, 250
BstDEI CTNAG 3 cut(s) 11, 240, 280
BstHHI GCGC 1 cut(s) 40
BstKTI GATC 2 cut(s) 426, 446
BstMAI GTCTC 2 cut(s) 155, 233
BstMBI GATC 2 cut(s) 423, 443
BstMWI GCNNNNNNNGC 2 cut(s) 182, 285
BstNI CCWGG 1 cut(s) 409
BstSCI CCNGG 2 cut(s) 124, 407
BstSFI CTRYAG 2 cut(s) 70, 267
BstV1I GCAGC 3 cut(s) 163, 209, 264
BstX2I RGATCY 1 cut(s) 443
BstXI CCANNNNNNTGG 1 cut(s) 355
BstYI RGATCY 1 cut(s) 443
BtrI CACGTC 2 cut(s) 193, 263
Cac8I GCNNGC 2 cut(s) 246, 250
CciI TCATGA 1 cut(s) 304
CfoI GCGC 1 cut(s) 40
Cfr13I GGNCC 2 cut(s) 129, 544
Csp6I GTAC 1 cut(s) 59
CviAII CATG 3 cut(s) 295, 305, 349
CviQI GTAC 1 cut(s) 59
DdeI CTNAG 3 cut(s) 11, 240, 280
DpnI GATC 2 cut(s) 425, 445
DpnII GATC 2 cut(s) 423, 443
Eam1104I CTCTTC 1 cut(s) 80
EarI CTCTTC 1 cut(s) 80
Ecl136II GAGCTC 1 cut(s) 244
Eco24I GRGCYC 1 cut(s) 246
Eco47I GGWCC 2 cut(s) 129, 544
Eco53kI GAGCTC 1 cut(s) 244
EcoICRI GAGCTC 1 cut(s) 244
EcoO109I RGGNCCY 1 cut(s) 544
EcoRI GAATTC 1 cut(s) 16
EcoRII CCWGG 1 cut(s) 407
EcoT22I ATGCAT 1 cut(s) 465
EcoT38I GRGCYC 1 cut(s) 246
Esp3I CGTCTC 1 cut(s) 233
FaeI CATG 3 cut(s) 298, 308, 352
FaiI YATR 7 cut(s) 187, 296, 306, 350, 472, 482, 523
FaqI GGGAC 1 cut(s) 142
FatI CATG 3 cut(s) 294, 304, 348
Fnu4HI GCNGC 4 cut(s) 177, 198, 253, 322
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 4 cut(s) 177, 198, 253, 322
FspBI CTAG 2 cut(s) 149, 276
GlaI GCGC 1 cut(s) 39
GluI GCNGC 4 cut(s) 177, 198, 253, 322
HapII CCGG 3 cut(s) 21, 82, 125
HhaI GCGC 1 cut(s) 40
Hin1II CATG 3 cut(s) 298, 308, 352
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HincII GTYRAC 1 cut(s) 435
HindII GTYRAC 1 cut(s) 435
HinfI GANTC 6 cut(s) 78, 163, 272, 341, 399, 431
HpaII CCGG 3 cut(s) 21, 82, 125
Hpy166II GTNNAC 4 cut(s) 59, 122, 358, 435
Hpy188I TCNGA 4 cut(s) 112, 212, 283, 398
Hpy188III TCNNGA 4 cut(s) 82, 160, 167, 305
Hpy8I GTNNAC 4 cut(s) 59, 122, 358, 435
Hpy99I CGWCG 1 cut(s) 194
HpyAV CCTTC 2 cut(s) 266, 326
HpyCH4III ACNGT 1 cut(s) 140
HpyCH4IV ACGT 2 cut(s) 192, 262
HpyCH4V TGCA 4 cut(s) 179, 269, 352, 463
HpyF10VI GCNNNNNNNGC 2 cut(s) 182, 285
HpyF3I CTNAG 3 cut(s) 11, 240, 280
HpySE526I ACGT 2 cut(s) 192, 262
Hsp92II CATG 3 cut(s) 298, 308, 352
HspAI GCGC 1 cut(s) 38
KflI GGGWCCC 1 cut(s) 544
Kpn2I TCCGGA 1 cut(s) 81
Kzo9I GATC 2 cut(s) 423, 443
LmnI GCTCC 2 cut(s) 374, 388
Lsp1109I GCAGC 3 cut(s) 163, 209, 264
LweI GCATC 1 cut(s) 450
MaeI CTAG 2 cut(s) 149, 276
MaeII ACGT 2 cut(s) 192, 262
MaeIII GTNAC 2 cut(s) 23, 530
MalI GATC 2 cut(s) 425, 445
MboI GATC 2 cut(s) 423, 443
MboII GAAGA 1 cut(s) 97
MflI RGATCY 1 cut(s) 443
MhlI GDGCHC 1 cut(s) 246
MluCI AATT 2 cut(s) 16, 414
MlyI GAGTC 6 cut(s) 87, 157, 266, 350, 393, 440
MmeI TCCRAC 1 cut(s) 410
MnlI CCTC 4 cut(s) 68, 206, 301, 382
Mph1103I ATGCAT 1 cut(s) 465
MroI TCCGGA 1 cut(s) 81
MseI TTAA 1 cut(s) 550
MslI CAYNNNNRTG 2 cut(s) 293, 353
MspI CCGG 3 cut(s) 21, 82, 125
MspR9I CCNGG 2 cut(s) 126, 409
Mva1269I GAATGC 3 cut(s) 288, 463, 514
MvaI CCWGG 1 cut(s) 409
MwoI GCNNNNNNNGC 2 cut(s) 182, 285
NciI CCSGG 1 cut(s) 126
NdeII GATC 2 cut(s) 423, 443
NlaIII CATG 3 cut(s) 298, 308, 352
NlaIV GGNNCC 3 cut(s) 130, 545, 546
NmuCI GTSAC 1 cut(s) 530
NsiI ATGCAT 1 cut(s) 465
PagI TCATGA 1 cut(s) 304
PasI CCCWGGG 1 cut(s) 408
PctI GAATGC 3 cut(s) 288, 463, 514
PkrI GCNGC 4 cut(s) 178, 199, 254, 323
PleI GAGTC 6 cut(s) 86, 157, 266, 349, 393, 439
PpsI GAGTC 6 cut(s) 86, 157, 266, 349, 393, 439
PpuMI RGGWCCY 1 cut(s) 544
Psp124BI GAGCTC 1 cut(s) 246
Psp5II RGGWCCY 1 cut(s) 544
Psp6I CCWGG 1 cut(s) 407
PspGI CCWGG 1 cut(s) 407
PspN4I GGNNCC 3 cut(s) 130, 545, 546
PspPI GGNCC 2 cut(s) 129, 544
PspPPI RGGWCCY 1 cut(s) 544
PstI CTGCAG 1 cut(s) 271
PsuI RGATCY 1 cut(s) 443
RsaI GTAC 1 cut(s) 60
RsaNI GTAC 1 cut(s) 59
RseI CAYNNNNRTG 2 cut(s) 293, 353
SacI GAGCTC 1 cut(s) 246
SaqAI TTAA 1 cut(s) 550
SatI GCNGC 4 cut(s) 177, 198, 253, 322
Sau3AI GATC 2 cut(s) 423, 443
Sau96I GGNCC 2 cut(s) 129, 544
SchI GAGTC 6 cut(s) 87, 157, 266, 350, 393, 440
ScrFI CCNGG 2 cut(s) 126, 409
SduI GDGCHC 1 cut(s) 246
SetI ASST 9 cut(s) 58, 195, 226, 246, 265, 281, 365, 371, 385
SfaNI GCATC 1 cut(s) 450
SfcI CTRYAG 2 cut(s) 70, 267
SinI GGWCC 2 cut(s) 129, 544
SmiMI CAYNNNNRTG 2 cut(s) 293, 353
SmlI CTYRAG 1 cut(s) 364
SmoI CTYRAG 1 cut(s) 364
Sse9I AATT 2 cut(s) 16, 414
SsiI CCGC 2 cut(s) 183, 322
SspMI CTAG 2 cut(s) 149, 276
SstI GAGCTC 1 cut(s) 246
StyD4I CCNGG 2 cut(s) 124, 407
TaaI ACNGT 1 cut(s) 140
TaiI ACGT 2 cut(s) 195, 265
TaqI TCGA 1 cut(s) 159
TasI AATT 2 cut(s) 16, 414
TauI GCSGC 1 cut(s) 324
Tru1I TTAA 1 cut(s) 550
Tru9I TTAA 1 cut(s) 550
TseFI GTSAC 1 cut(s) 530
TseI GCWGC 3 cut(s) 176, 197, 252
Tsp45I GTSAC 1 cut(s) 530
TspDTI ATGAA 3 cut(s) 194, 293, 521
TspGWI ACGGA 1 cut(s) 107
VpaK11BI GGWCC 2 cut(s) 129, 544
XapI RAATTY 2 cut(s) 16, 414
XspI CTAG 2 cut(s) 149, 276
Zsp2I ATGCAT 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.