FvH4_5g33220

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0013884
Physical Location & Seq
Forward (+)
24034746 .. 24036098
1353 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g33220.t1

Sequence Viewer

Length: 591 bp
ATGGGAGAGCCCAATTCCGGCAGCAGCATTGTCTGTGGTGCTGCGACTTCTGTCTACAGAGGCGTCCGCAAGCGAAAATGGGGCAAATGGGTGTCCGAAATCCGCGAGCCGGGGAAGAAAACCAGAATCTGGTTAGGGAGCTTCGAGACCCCCGAGATGGCTGCCGCGGCATACGACGTGGCGGCATTGCATTTCCGGGGACGTGAGGCCAGGCTCAACTTCCCCGAACTTGTCAGCTACCTGCCACGCCCTGCCAGCTCCAGCCCCGACGACATACGCATGGCTGCGCATGAAGCGGCTATAAGGCTGAGGAGTAACAATGGTGACACTAATAACTCTTTGGTGGCAGCAGGTCATTGTGAGGTTGGGAGTTCTAGCTCCAACGCGGTGGCTCCGGTGACGGTGAGGCTGTCGCCAATTCAAATTCAGGCGATTAACGAGTCCCCCTTGGACTCGCCCAAGATGTGGATGCAAATGTCTGAAGCTCTCATGTCTGAGGAATCCATGATGTTCTCTAATGACTTCGACGATGAGGGGATGAATAGTAATCAATGGGGGAATATGCAACAAGATTCTCTGTGGGATCCTTAG

Protein Analysis

197

Amino Acids

21.57

Weight (kDa)

5.26

Isoelectric Point (pI)

49.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 17 - 67 6.4e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013884)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71450
fragaria_vesca FvH4_5g33220
malus_domestica MD08G1213600.v1.1 MD15G1396900.v1.1
prunus_persica Prupe.1G545700_v2.0.a1
pyrus_communis pycom08g18340
rosa_chinensis RchiOBHm_Chr7g0231631
rosa_laevigata RLG00000001404
rosa_multiflora Rmu_sc0003063.1_g000032 Rmu_sc0004618.1_g000053
rosa_roxburghii Rroxscaffold_3G00229000
rosa_rugosa Rorug07G0267800
rosa_samantha Rh7AG422300 Rh7BG396700 Rh7CG442600 Rh7DG414700
rosa_wichuraiana Rw7G034820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 288
Acc36I ACCTGC 2 cut(s) 249, 341
AccB7I CCANNNNNTGG 2 cut(s) 129, 465
AccI GTMKAC 1 cut(s) 54
AccII CGCG 3 cut(s) 105, 167, 386
AciI CCGC 7 cut(s) 67, 103, 165, 167, 182, 296, 386
AclWI GGATC 1 cut(s) 578
AcsI RAATTY 1 cut(s) 423
AcuI CTGAAG 1 cut(s) 501
AcyI GRCGYC 1 cut(s) 63
AfiI CCNNNNNNNGG 5 cut(s) 17, 109, 129, 157, 465
AgsI TTSAA 1 cut(s) 422
AjiI CACGTC 2 cut(s) 178, 203
AjnI CCWGG 1 cut(s) 209
AluBI AGCT 5 cut(s) 141, 237, 258, 378, 485
AluI AGCT 5 cut(s) 141, 237, 258, 378, 485
Alw26I GTCTC 1 cut(s) 140
AlwI GGATC 1 cut(s) 578
AlwNI CAGNNNCTG 1 cut(s) 129
Ama87I CYCGRG 1 cut(s) 152
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 6 cut(s) 21, 24, 41, 161, 284, 347
ApoI RAATTY 1 cut(s) 423
AspLEI GCGC 1 cut(s) 289
AsuC2I CCSGG 2 cut(s) 111, 197
AsuHPI GGTGA 3 cut(s) 335, 409, 415
AvaI CYCGRG 1 cut(s) 152
BamHI GGATCC 1 cut(s) 583
BanII GRGCYC 1 cut(s) 12
BbvCI CCTCAGC 1 cut(s) 308
BbvI GCAGC 6 cut(s) 28, 33, 36, 148, 271, 359
BccI CCATC 1 cut(s) 151
BcgI CGANNNNNNTGC 2 cut(s) 143, 177
BciT130I CCWGG 1 cut(s) 211
BcnI CCSGG 2 cut(s) 111, 197
BcoDI GTCTC 1 cut(s) 140
BfaI CTAG 1 cut(s) 375
BfmI CTRYAG 1 cut(s) 55
BfuAI ACCTGC 2 cut(s) 249, 341
Bme1390I CCNGG 3 cut(s) 111, 197, 211
BmeT110I CYCGRG 1 cut(s) 152
BmgBI CACGTC 2 cut(s) 178, 203
BmiI GGNNCC 2 cut(s) 393, 585
BmrFI CCNGG 3 cut(s) 111, 197, 211
BmsI GCATC 1 cut(s) 459
BoxI GACNNNNGTC 1 cut(s) 50
BpmI CTGGAG 1 cut(s) 244
Bpu10I CCTNAGC 1 cut(s) 308
BpuMI CCSGG 2 cut(s) 111, 197
BsaHI GRCGYC 1 cut(s) 63
BsaI GGTCTC 1 cut(s) 140
BsaJI CCNNGG 4 cut(s) 110, 165, 196, 447
BsaWI WCCGGW 1 cut(s) 394
Bsc4I CCNNNNNNNGG 5 cut(s) 17, 109, 129, 157, 465
Bse3DI GCAATG 1 cut(s) 185
BseBI CCWGG 1 cut(s) 211
BseDI CCNNGG 4 cut(s) 110, 165, 196, 447
BseGI GGATG 2 cut(s) 474, 543
BseLI CCNNNNNNNGG 5 cut(s) 17, 109, 129, 157, 465
BseMI GCAATG 1 cut(s) 185
BseMII CTCAG 2 cut(s) 299, 486
BseRI GAGGAG 1 cut(s) 325
BseXI GCAGC 6 cut(s) 28, 33, 36, 148, 271, 359
Bsh1236I CGCG 3 cut(s) 105, 167, 386
BshFI GGCC 1 cut(s) 209
BsiHKCI CYCGRG 1 cut(s) 152
BsiSI CCGG 4 cut(s) 18, 110, 196, 395
BslFI GGGAC 2 cut(s) 213, 427
BslI CCNNNNNNNGG 5 cut(s) 17, 109, 129, 157, 465
BsmAI GTCTC 1 cut(s) 140
BsmFI GGGAC 2 cut(s) 213, 427
BsnI GGCC 1 cut(s) 209
Bso31I GGTCTC 1 cut(s) 140
BsoBI CYCGRG 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 12
Bsp143I GATC 1 cut(s) 583
BspACI CCGC 7 cut(s) 67, 103, 165, 167, 182, 296, 386
BspANI GGCC 1 cut(s) 209
BspCNI CTCAG 2 cut(s) 300, 487
BspFNI CGCG 3 cut(s) 105, 167, 386
BspLI GGNNCC 2 cut(s) 393, 585
BspMI ACCTGC 2 cut(s) 249, 341
BspPI GGATC 1 cut(s) 578
BspTNI GGTCTC 1 cut(s) 140
BsrDI GCAATG 1 cut(s) 185
BssECI CCNNGG 4 cut(s) 110, 165, 196, 447
BssMI GATC 1 cut(s) 583
BssNI GRCGYC 1 cut(s) 63
BssT1I CCWWGG 1 cut(s) 447
Bst2UI CCWGG 1 cut(s) 211
Bst4CI ACNGT 1 cut(s) 403
BstACI GRCGYC 1 cut(s) 63
BstC8I GCNNGC 3 cut(s) 71, 107, 256
BstDEI CTNAG 3 cut(s) 308, 495, 588
BstDSI CCRYGG 1 cut(s) 165
BstF5I GGATG 2 cut(s) 474, 543
BstFNI CGCG 3 cut(s) 105, 167, 386
BstHHI GCGC 1 cut(s) 289
BstKTI GATC 1 cut(s) 586
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 1 cut(s) 583
BstMWI GCNNNNNNNGC 3 cut(s) 167, 255, 293
BstNI CCWGG 1 cut(s) 211
BstPAI GACNNNNGTC 1 cut(s) 50
BstSCI CCNGG 3 cut(s) 109, 195, 209
BstSFI CTRYAG 1 cut(s) 55
BstUI CGCG 3 cut(s) 105, 167, 386
BstV1I GCAGC 6 cut(s) 28, 33, 36, 148, 271, 359
BstX2I RGATCY 1 cut(s) 583
BstXI CCANNNNNNTGG 1 cut(s) 388
BstYI RGATCY 1 cut(s) 583
BsuRI GGCC 1 cut(s) 209
BtgI CCRYGG 1 cut(s) 165
BtrI CACGTC 2 cut(s) 178, 203
BtsCI GGATG 2 cut(s) 474, 543
BveI ACCTGC 2 cut(s) 249, 341
Cac8I GCNNGC 3 cut(s) 71, 107, 256
CaiI CAGNNNCTG 1 cut(s) 129
CfoI GCGC 1 cut(s) 289
Cfr42I CCGCGG 1 cut(s) 168
CseI GACGC 1 cut(s) 52
CviAII CATG 4 cut(s) 280, 290, 490, 505
DdeI CTNAG 3 cut(s) 308, 495, 588
DpnI GATC 1 cut(s) 585
DpnII GATC 1 cut(s) 583
Eco130I CCWWGG 1 cut(s) 447
Eco24I GRGCYC 1 cut(s) 12
Eco31I GGTCTC 1 cut(s) 140
Eco57I CTGAAG 1 cut(s) 501
Eco88I CYCGRG 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 209
EcoT14I CCWWGG 1 cut(s) 447
EcoT38I GRGCYC 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 447
FaeI CATG 4 cut(s) 283, 293, 493, 508
FaiI YATR 8 cut(s) 172, 275, 281, 291, 302, 491, 506, 563
FaqI GGGAC 2 cut(s) 213, 427
FatI CATG 4 cut(s) 279, 289, 489, 504
FblI GTMKAC 1 cut(s) 54
FokI GGATG 2 cut(s) 481, 550
FriOI GRGCYC 1 cut(s) 12
FspBI CTAG 1 cut(s) 375
FspI TGCGCA 1 cut(s) 288
GlaI GCGC 1 cut(s) 288
GsuI CTGGAG 1 cut(s) 244
HaeIII GGCC 1 cut(s) 209
HapII CCGG 4 cut(s) 18, 110, 196, 395
HgaI GACGC 1 cut(s) 52
HhaI GCGC 1 cut(s) 289
Hin1I GRCGYC 1 cut(s) 63
Hin1II CATG 4 cut(s) 283, 293, 493, 508
Hin6I GCGC 1 cut(s) 287
HinP1I GCGC 1 cut(s) 287
HinfI GANTC 5 cut(s) 126, 440, 452, 500, 572
HpaII CCGG 4 cut(s) 18, 110, 196, 395
HphI GGTGA 3 cut(s) 335, 409, 415
Hpy166II GTNNAC 1 cut(s) 55
Hpy188I TCNGA 3 cut(s) 97, 481, 496
Hpy188III TCNNGA 1 cut(s) 145
Hpy8I GTNNAC 1 cut(s) 55
Hpy99I CGWCG 3 cut(s) 179, 272, 530
HpyCH4III ACNGT 1 cut(s) 403
HpyCH4IV ACGT 2 cut(s) 177, 202
HpyCH4V TGCA 3 cut(s) 190, 472, 565
HpyF10VI GCNNNNNNNGC 3 cut(s) 167, 255, 293
HpyF3I CTNAG 3 cut(s) 308, 495, 588
HpySE526I ACGT 2 cut(s) 177, 202
Hsp92I GRCGYC 1 cut(s) 63
Hsp92II CATG 4 cut(s) 283, 293, 493, 508
HspAI GCGC 1 cut(s) 287
KspI CCGCGG 1 cut(s) 168
Kzo9I GATC 1 cut(s) 583
LmnI GCTCC 4 cut(s) 138, 263, 383, 397
Lsp1109I GCAGC 6 cut(s) 28, 33, 36, 148, 271, 359
LweI GCATC 1 cut(s) 459
MaeI CTAG 1 cut(s) 375
MaeII ACGT 2 cut(s) 177, 202
MaeIII GTNAC 3 cut(s) 314, 323, 397
MalI GATC 1 cut(s) 585
MboI GATC 1 cut(s) 583
MboII GAAGA 1 cut(s) 127
MflI RGATCY 1 cut(s) 583
MhlI GDGCHC 1 cut(s) 12
MluCI AATT 3 cut(s) 13, 417, 423
MlyI GAGTC 2 cut(s) 446, 449
MmeI TCCRAC 1 cut(s) 405
MnlI CCTC 7 cut(s) 53, 199, 303, 355, 399, 490, 526
MseI TTAA 1 cut(s) 435
MslI CAYNNNNRTG 1 cut(s) 278
MspA1I CMGCKG 1 cut(s) 167
MspI CCGG 4 cut(s) 18, 110, 196, 395
MspR9I CCNGG 3 cut(s) 111, 197, 211
MvaI CCWGG 1 cut(s) 211
MvnI CGCG 3 cut(s) 105, 167, 386
MwoI GCNNNNNNNGC 3 cut(s) 167, 255, 293
NciI CCSGG 2 cut(s) 111, 197
NdeII GATC 1 cut(s) 583
NlaIII CATG 4 cut(s) 283, 293, 493, 508
NlaIV GGNNCC 2 cut(s) 393, 585
NmuCI GTSAC 2 cut(s) 323, 397
NsbI TGCGCA 1 cut(s) 288
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PfeI GAWTC 3 cut(s) 126, 500, 572
PflMI CCANNNNNTGG 2 cut(s) 129, 465
PleI GAGTC 2 cut(s) 446, 448
PpsI GAGTC 2 cut(s) 446, 448
PshAI GACNNNNGTC 1 cut(s) 50
Psp6I CCWGG 1 cut(s) 209
PspGI CCWGG 1 cut(s) 209
PspN4I GGNNCC 2 cut(s) 393, 585
PstNI CAGNNNCTG 1 cut(s) 129
PsuI RGATCY 1 cut(s) 583
RseI CAYNNNNRTG 1 cut(s) 278
SacII CCGCGG 1 cut(s) 168
SaqAI TTAA 1 cut(s) 435
Sau3AI GATC 1 cut(s) 583
SchI GAGTC 2 cut(s) 446, 449
ScrFI CCNGG 3 cut(s) 111, 197, 211
SduI GDGCHC 1 cut(s) 12
SfaNI GCATC 1 cut(s) 459
SfcI CTRYAG 1 cut(s) 55
Sfr303I CCGCGG 1 cut(s) 168
SgrBI CCGCGG 1 cut(s) 168
SmiMI CAYNNNNRTG 1 cut(s) 278
Sse9I AATT 3 cut(s) 13, 417, 423
SsiI CCGC 7 cut(s) 67, 103, 165, 167, 182, 296, 386
SspMI CTAG 1 cut(s) 375
StyD4I CCNGG 3 cut(s) 109, 195, 209
StyI CCWWGG 1 cut(s) 447
TaaI ACNGT 1 cut(s) 403
TaiI ACGT 2 cut(s) 180, 205
TaqI TCGA 2 cut(s) 144, 525
TasI AATT 3 cut(s) 13, 417, 423
TauI GCSGC 4 cut(s) 167, 170, 185, 299
TfiI GAWTC 3 cut(s) 126, 500, 572
Tru1I TTAA 1 cut(s) 435
Tru9I TTAA 1 cut(s) 435
TseFI GTSAC 2 cut(s) 323, 397
TseI GCWGC 6 cut(s) 21, 24, 41, 161, 284, 347
Tsp45I GTSAC 2 cut(s) 323, 397
TspDTI ATGAA 2 cut(s) 306, 554
Van91I CCANNNNNTGG 2 cut(s) 129, 465
XapI RAATTY 1 cut(s) 423
XmiI GTMKAC 1 cut(s) 54
XspI CTAG 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.