Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0013884

Physical Location & Seq

Genomic Coordinates Reverse (-)

27671573 .. 27672106

Gene Structure 534 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1213600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGGAGATCCCGCCAATTCTAGCAATGCCTACGGCCCTGCCTCTTCGACCTACAGAGGCGTCCGCAAGAGAAAATGGGGCAAATGGGTGTCGGAAATCCGTGAGCCCGGAACCAAAACCAGAATTTGGTTAGGCAGCTTCGAGACACCAGAGATGGCCGCCGCCGCATATGATGTGGCCGCGTTACATTTCAGGGGTCGCGACGCAAGGCTCAACTTCCCTGAACTTGTCAGTAACTTGCCTCGCCCCGCCAGCTCAACCCCCGATGACATACGCACGGCGGCACAGGAAGCAGCCTTGATGCTGAGAGGTAGTGGTGCTGGTGCGGTTGAAGGTCATGATCAGGTTGAGGGCTCCAGCTCAAACGTCGGGCCGGTGACAGTGAGGCTCTCGCCGTCTCAAATCCAAGCGATCAACGAGTCACCCTTGGACTCGCCCAAAATGTGGATGCAAATGGCAGAGCCTACGATGTTCTCTGATGACTTTGAGAATCAGTGGGAGGATATGCCAAATGACTCTCTTTGGGATCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

178

Amino Acids

19.41

Weight (kDa)

4.85

Isoelectric Point (pI)

46.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	18 - 66	2.6e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71450
fragaria_vesca	FvH4_5g33220
malus_domestica	MD08G1213600.v1.1 MD15G1396900.v1.1
prunus_persica	Prupe.1G545700_v2.0.a1
pyrus_communis	pycom08g18340
rosa_chinensis	RchiOBHm_Chr7g0231631
rosa_laevigata	RLG00000001404
rosa_multiflora	Rmu_sc0003063.1_g000032 Rmu_sc0004618.1_g000053
rosa_roxburghii	Rroxscaffold_3G00229000
rosa_rugosa	Rorug07G0267800
rosa_samantha	Rh7AG422300 Rh7BG396700 Rh7CG442600 Rh7DG414700
rosa_wichuraiana	Rw7G034820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	126, 444
AccII	CGCG	2 cut(s)	182, 201
AciI	CCGC	9 cut(s)	12, 64, 159, 162, 165, 180, 249, 281, 326
AclWI	GGATC	2 cut(s)	2, 521
AcoI	YGGCCR	2 cut(s)	156, 177
AcsI	RAATTY	1 cut(s)	123
AcyI	GRCGYC	1 cut(s)	60
AfiI	CCNNNNNNNGG	2 cut(s)	126, 444
AgsI	TTSAA	1 cut(s)	332
AluBI	AGCT	3 cut(s)	138, 255, 360
AluI	AGCT	3 cut(s)	138, 255, 360
Alw26I	GTCTC	2 cut(s)	137, 402
AlwI	GGATC	2 cut(s)	2, 521
AoxI	GGCC	4 cut(s)	34, 156, 177, 371
ApeKI	GCWGC	2 cut(s)	135, 293
ApoI	RAATTY	1 cut(s)	123
AspS9I	GGNCC	2 cut(s)	35, 371
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	2 cut(s)	388, 414
BamHI	GGATCC	1 cut(s)	526
BanII	GRGCYC	2 cut(s)	108, 356
BbvI	GCAGC	2 cut(s)	147, 305
BccI	CCATC	1 cut(s)	148
BceAI	ACGGC	3 cut(s)	49, 294, 379
BclI	TGATCA	1 cut(s)	340
BcnI	CCSGG	1 cut(s)	108
BcoDI	GTCTC	2 cut(s)	137, 402
BfaI	CTAG	1 cut(s)	21
BfmI	CTRYAG	1 cut(s)	52
BisI	GCNGC	7 cut(s)	136, 159, 162, 165, 180, 282, 294
BlsI	GCNGC	7 cut(s)	137, 160, 163, 166, 181, 283, 295
Bme1390I	CCNGG	1 cut(s)	108
BmgT120I	GGNCC	2 cut(s)	35, 371
BmiI	GGNNCC	3 cut(s)	112, 355, 528
BmrFI	CCNGG	1 cut(s)	108
BmsI	GCATC	2 cut(s)	291, 438
BpmI	CTGGAG	1 cut(s)	340
BpuMI	CCSGG	1 cut(s)	108
BsaHI	GRCGYC	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	426
Bsc4I	CCNNNNNNNGG	2 cut(s)	126, 444
Bse118I	RCCGGY	1 cut(s)	373
Bse3DI	GCAATG	1 cut(s)	31
BseDI	CCNNGG	1 cut(s)	426
BseGI	GGATG	1 cut(s)	453
BseLI	CCNNNNNNNGG	2 cut(s)	126, 444
BseMI	GCAATG	1 cut(s)	31
BseMII	CTCAG	1 cut(s)	296
BseXI	GCAGC	2 cut(s)	147, 305
Bsh1236I	CGCG	2 cut(s)	182, 201
BshFI	GGCC	4 cut(s)	36, 158, 179, 373
BsiSI	CCGG	2 cut(s)	108, 374
BslI	CCNNNNNNNGG	2 cut(s)	126, 444
BsmAI	GTCTC	2 cut(s)	137, 402
BsmBI	CGTCTC	1 cut(s)	402
BsnI	GGCC	4 cut(s)	36, 158, 179, 373
Bsp1286I	GDGCHC	2 cut(s)	108, 356
Bsp143I	GATC	4 cut(s)	7, 340, 411, 526
Bsp68I	TCGCGA	1 cut(s)	201
BspACI	CCGC	9 cut(s)	12, 64, 159, 162, 165, 180, 249, 281, 326
BspANI	GGCC	4 cut(s)	36, 158, 179, 373
BspCNI	CTCAG	1 cut(s)	297
BspFNI	CGCG	2 cut(s)	182, 201
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	3 cut(s)	112, 355, 528
BspPI	GGATC	2 cut(s)	2, 521
BsrDI	GCAATG	1 cut(s)	31
BsrFI	RCCGGY	1 cut(s)	373
BssAI	RCCGGY	1 cut(s)	373
BssECI	CCNNGG	1 cut(s)	426
BssMI	GATC	4 cut(s)	7, 340, 411, 526
BssNI	GRCGYC	1 cut(s)	60
BssT1I	CCWWGG	1 cut(s)	426
Bst4CI	ACNGT	1 cut(s)	382
Bst6I	CTCTTC	1 cut(s)	49
BstACI	GRCGYC	1 cut(s)	60
BstC8I	GCNNGC	1 cut(s)	253
BstDEI	CTNAG	1 cut(s)	305
BstF5I	GGATG	1 cut(s)	453
BstFNI	CGCG	2 cut(s)	182, 201
BstKTI	GATC	4 cut(s)	10, 343, 414, 529
BstMAI	GTCTC	2 cut(s)	137, 402
BstMBI	GATC	4 cut(s)	7, 340, 411, 526
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 252, 290
BstSCI	CCNGG	1 cut(s)	106
BstSFI	CTRYAG	1 cut(s)	52
BstUI	CGCG	2 cut(s)	182, 201
BstV1I	GCAGC	2 cut(s)	147, 305
BstX2I	RGATCY	2 cut(s)	7, 526
BstYI	RGATCY	2 cut(s)	7, 526
BsuRI	GGCC	4 cut(s)	36, 158, 179, 373
BtsCI	GGATG	1 cut(s)	453
BtsIMutI	CAGTG	2 cut(s)	387, 500
BtuMI	TCGCGA	1 cut(s)	201
Cac8I	GCNNGC	1 cut(s)	253
CciI	TCATGA	1 cut(s)	337
Cfr10I	RCCGGY	1 cut(s)	373
Cfr13I	GGNCC	2 cut(s)	35, 371
CseI	GACGC	2 cut(s)	49, 212
CviAII	CATG	1 cut(s)	338
DdeI	CTNAG	1 cut(s)	305
DpnI	GATC	4 cut(s)	9, 342, 413, 528
DpnII	GATC	4 cut(s)	7, 340, 411, 526
EaeI	YGGCCR	2 cut(s)	156, 177
Eam1104I	CTCTTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	49
Eco130I	CCWWGG	1 cut(s)	426
Eco24I	GRGCYC	2 cut(s)	108, 356
EcoT14I	CCWWGG	1 cut(s)	426
EcoT38I	GRGCYC	2 cut(s)	108, 356
ErhI	CCWWGG	1 cut(s)	426
Esp3I	CGTCTC	1 cut(s)	402
FaeI	CATG	1 cut(s)	341
FaiI	YATR	5 cut(s)	169, 171, 272, 339, 506
FatI	CATG	1 cut(s)	337
FauI	CCCGC	2 cut(s)	19, 256
FauNDI	CATATG	1 cut(s)	169
FbaI	TGATCA	1 cut(s)	340
Fnu4HI	GCNGC	7 cut(s)	136, 159, 162, 165, 180, 282, 294
FokI	GGATG	1 cut(s)	460
FriOI	GRGCYC	2 cut(s)	108, 356
Fsp4HI	GCNGC	7 cut(s)	136, 159, 162, 165, 180, 282, 294
FspBI	CTAG	1 cut(s)	21
GluI	GCNGC	7 cut(s)	136, 159, 162, 165, 180, 282, 294
GsuI	CTGGAG	1 cut(s)	340
HaeIII	GGCC	4 cut(s)	36, 158, 179, 373
HapII	CCGG	2 cut(s)	108, 374
HgaI	GACGC	2 cut(s)	49, 212
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	1 cut(s)	341
HinfI	GANTC	4 cut(s)	419, 431, 490, 515
HpaII	CCGG	2 cut(s)	108, 374
HphI	GGTGA	2 cut(s)	388, 414
Hpy188I	TCNGA	2 cut(s)	94, 478
Hpy188III	TCNNGA	3 cut(s)	142, 200, 338
Hpy99I	CGWCG	2 cut(s)	206, 371
HpyAV	CCTTC	1 cut(s)	326
HpyCH4III	ACNGT	1 cut(s)	382
HpyCH4IV	ACGT	1 cut(s)	366
HpyCH4V	TGCA	1 cut(s)	451
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 252, 290
HpyF3I	CTNAG	1 cut(s)	305
HpySE526I	ACGT	1 cut(s)	366
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	1 cut(s)	341
Ksp22I	TGATCA	1 cut(s)	340
Kzo9I	GATC	4 cut(s)	7, 340, 411, 526
LmnI	GCTCC	1 cut(s)	359
Lsp1109I	GCAGC	2 cut(s)	147, 305
LweI	GCATC	2 cut(s)	291, 438
MaeI	CTAG	1 cut(s)	21
MaeII	ACGT	1 cut(s)	366
MaeIII	GTNAC	4 cut(s)	183, 233, 376, 420
MalI	GATC	4 cut(s)	9, 342, 413, 528
MboI	GATC	4 cut(s)	7, 340, 411, 526
MboII	GAAGA	1 cut(s)	36
MflI	RGATCY	2 cut(s)	7, 526
MhlI	GDGCHC	2 cut(s)	108, 356
MluCI	AATT	2 cut(s)	16, 123
MlyI	GAGTC	3 cut(s)	425, 428, 509
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	7 cut(s)	50, 52, 252, 302, 343, 378, 493
MseI	TTAA	1 cut(s)	532
MspI	CCGG	2 cut(s)	108, 374
MspR9I	CCNGG	1 cut(s)	108
MvnI	CGCG	2 cut(s)	182, 201
MwoI	GCNNNNNNNGC	3 cut(s)	164, 252, 290
NciI	CCSGG	1 cut(s)	108
NdeI	CATATG	1 cut(s)	169
NdeII	GATC	4 cut(s)	7, 340, 411, 526
NlaIII	CATG	1 cut(s)	341
NlaIV	GGNNCC	3 cut(s)	112, 355, 528
NmuCI	GTSAC	2 cut(s)	376, 420
NruI	TCGCGA	1 cut(s)	201
PagI	TCATGA	1 cut(s)	337
PfeI	GAWTC	1 cut(s)	490
PflMI	CCANNNNNTGG	2 cut(s)	126, 444
PkrI	GCNGC	7 cut(s)	137, 160, 163, 166, 181, 283, 295
PleI	GAGTC	3 cut(s)	425, 427, 509
PpsI	GAGTC	3 cut(s)	425, 427, 509
PspN4I	GGNNCC	3 cut(s)	112, 355, 528
PspPI	GGNCC	2 cut(s)	35, 371
PsuI	RGATCY	2 cut(s)	7, 526
RruI	TCGCGA	1 cut(s)	201
SaqAI	TTAA	1 cut(s)	532
SatI	GCNGC	7 cut(s)	136, 159, 162, 165, 180, 282, 294
Sau3AI	GATC	4 cut(s)	7, 340, 411, 526
Sau96I	GGNCC	2 cut(s)	35, 371
SchI	GAGTC	3 cut(s)	425, 428, 509
ScrFI	CCNGG	1 cut(s)	108
SduI	GDGCHC	2 cut(s)	108, 356
SetI	ASST	8 cut(s)	53, 140, 257, 313, 337, 348, 362, 369
SfaNI	GCATC	2 cut(s)	291, 438
SfcI	CTRYAG	1 cut(s)	52
Sse9I	AATT	2 cut(s)	16, 123
SsiI	CCGC	9 cut(s)	12, 64, 159, 162, 165, 180, 249, 281, 326
SspMI	CTAG	1 cut(s)	21
StyD4I	CCNGG	1 cut(s)	106
StyI	CCWWGG	1 cut(s)	426
TaaI	ACNGT	1 cut(s)	382
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	2 cut(s)	47, 141
TasI	AATT	2 cut(s)	16, 123
TauI	GCSGC	5 cut(s)	161, 164, 167, 182, 284
TfiI	GAWTC	1 cut(s)	490
Tru1I	TTAA	1 cut(s)	532
Tru9I	TTAA	1 cut(s)	532
TscAI	CASTG	2 cut(s)	387, 500
TseFI	GTSAC	2 cut(s)	376, 420
TseI	GCWGC	2 cut(s)	135, 293
Tsp45I	GTSAC	2 cut(s)	376, 420
TspGWI	ACGGA	1 cut(s)	89
TspRI	CASTG	2 cut(s)	387, 500
Van91I	CCANNNNNTGG	2 cut(s)	126, 444
XapI	RAATTY	1 cut(s)	123
XspI	CTAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.