Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013884

Physical Location & Seq

Genomic Coordinates Reverse (-)

44581442 .. 44582361

Gene Structure 920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G545700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGGAGAACCCAGTTCTAGCAATGCCTATGGAGCTGCCACTTCCTCCTATAGAGGAGTTCGAAAGAGAAAATGGGGCAAATGGGTGTCCGAAATTCGTGAGCCCGGGACCAAAACCCGAATCTGGCTAGGCAGCTTCGAAACCCCGGAGATGGCAGCAGCCGCCTATGATGTTGCTGCATTACATTTCCGTGGACGGGAGGCGAGGCTCAACTTCCCCGAACTGGTGAACAGCCTGCCTCGCCCCGCGAGCTCGAATGCGGAGGACATTCGCATGGCAGCACATGAAGCAGCCTTGAGGTTGAGAAGTAGCCCCGCCGCTGAAGCTCATGAGGCTGGGAGCTCCAGCTCGAACGTGGGCCCCGTCACGGTGAGGCTGTCGCCGAGTCAAATTCAAGCCATTAACGAGTCACCCTTGGACTCGCCCAAGATGTGGATGCAAATGTCTGAGTCTATGATGTTCTCTGGTGGCTTTGAGGATCAGTGGGAGGATATGCAAAATGATTCTCTTTGGGATCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

174

Amino Acids

19.08

Weight (kDa)

5.44

Isoelectric Point (pI)

62.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71450
fragaria_vesca	FvH4_5g33220
malus_domestica	MD08G1213600.v1.1 MD15G1396900.v1.1
prunus_persica	Prupe.1G545700_v2.0.a1
pyrus_communis	pycom08g18340
rosa_chinensis	RchiOBHm_Chr7g0231631
rosa_laevigata	RLG00000001404
rosa_multiflora	Rmu_sc0003063.1_g000032 Rmu_sc0004618.1_g000053
rosa_roxburghii	Rroxscaffold_3G00229000
rosa_rugosa	Rorug07G0267800
rosa_samantha	Rh7AG422300 Rh7BG396700 Rh7CG442600 Rh7DG414700
rosa_wichuraiana	Rw7G034820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	432
AccII	CGCG	1 cut(s)	248
AciI	CCGC	5 cut(s)	162, 246, 260, 315, 318
AclWI	GGATC	2 cut(s)	486, 509
AcsI	RAATTY	2 cut(s)	93, 390
AcuI	CTGAAG	1 cut(s)	342
AfiI	CCNNNNNNNGG	6 cut(s)	123, 151, 196, 223, 367, 432
AgsI	TTSAA	1 cut(s)	395
AluBI	AGCT	6 cut(s)	35, 135, 252, 326, 342, 348
AluI	AGCT	6 cut(s)	35, 135, 252, 326, 342, 348
Alw21I	GWGCWC	2 cut(s)	254, 344
AlwI	GGATC	2 cut(s)	486, 509
Ama87I	CYCGRG	1 cut(s)	104
AoxI	GGCC	1 cut(s)	358
ApaI	GGGCCC	1 cut(s)	362
ApeKI	GCWGC	7 cut(s)	35, 132, 155, 158, 176, 278, 290
ApoI	RAATTY	2 cut(s)	93, 390
AspS9I	GGNCC	3 cut(s)	108, 358, 359
AsuC2I	CCSGG	3 cut(s)	105, 106, 146
AsuHPI	GGTGA	3 cut(s)	238, 382, 402
AsuII	TTCGAA	2 cut(s)	61, 138
AvaI	CYCGRG	1 cut(s)	104
AvaII	GGWCC	1 cut(s)	108
BaeGI	GKGCMC	1 cut(s)	362
BamHI	GGATCC	1 cut(s)	514
BanII	GRGCYC	4 cut(s)	105, 254, 344, 362
Bbv12I	GWGCWC	2 cut(s)	254, 344
BbvI	GCAGC	7 cut(s)	22, 144, 163, 167, 170, 290, 302
BccI	CCATC	1 cut(s)	145
BcnI	CCSGG	3 cut(s)	105, 106, 146
BfaI	CTAG	2 cut(s)	18, 128
BfmI	CTRYAG	1 cut(s)	49
BisI	GCNGC	9 cut(s)	36, 133, 156, 159, 162, 177, 279, 291, 318
BlsI	GCNGC	9 cut(s)	37, 134, 157, 160, 163, 178, 280, 292, 319
Bme1390I	CCNGG	3 cut(s)	105, 106, 146
Bme18I	GGWCC	1 cut(s)	108
BmeT110I	CYCGRG	1 cut(s)	104
BmgT120I	GGNCC	3 cut(s)	108, 358, 359
BmiI	GGNNCC	4 cut(s)	109, 360, 361, 516
BmrFI	CCNGG	3 cut(s)	105, 106, 146
BmrI	ACTGGG	1 cut(s)	6
BmsI	GCATC	1 cut(s)	426
BmuI	ACTGGG	1 cut(s)	6
BpmI	CTGGAG	1 cut(s)	328
Bpu14I	TTCGAA	2 cut(s)	61, 138
BpuEI	CTTGAG	1 cut(s)	316
BpuMI	CCSGG	3 cut(s)	105, 106, 146
BsaJI	CCNNGG	4 cut(s)	104, 144, 190, 414
Bsc4I	CCNNNNNNNGG	6 cut(s)	123, 151, 196, 223, 367, 432
Bse1I	ACTGG	2 cut(s)	12, 228
Bse3DI	GCAATG	1 cut(s)	28
BseDI	CCNNGG	4 cut(s)	104, 144, 190, 414
BseGI	GGATG	1 cut(s)	441
BseLI	CCNNNNNNNGG	6 cut(s)	123, 151, 196, 223, 367, 432
BseMI	GCAATG	1 cut(s)	28
BseMII	CTCAG	1 cut(s)	438
BseNI	ACTGG	2 cut(s)	12, 228
BseRI	GAGGAG	1 cut(s)	69
BseSI	GKGCMC	1 cut(s)	362
BseXI	GCAGC	7 cut(s)	22, 144, 163, 167, 170, 290, 302
BseYI	CCCAGC	1 cut(s)	335
Bsh1236I	CGCG	1 cut(s)	248
BshFI	GGCC	1 cut(s)	360
BsiHKAI	GWGCWC	2 cut(s)	254, 344
BsiHKCI	CYCGRG	1 cut(s)	104
BsiSI	CCGG	2 cut(s)	105, 146
BslFI	GGGAC	1 cut(s)	121
BslI	CCNNNNNNNGG	6 cut(s)	123, 151, 196, 223, 367, 432
BsmFI	GGGAC	1 cut(s)	121
BsmI	GAATGC	1 cut(s)	262
BsnI	GGCC	1 cut(s)	360
BsoBI	CYCGRG	1 cut(s)	104
Bsp119I	TTCGAA	2 cut(s)	61, 138
Bsp120I	GGGCCC	1 cut(s)	358
Bsp1286I	GDGCHC	4 cut(s)	105, 254, 344, 362
Bsp143I	GATC	2 cut(s)	478, 514
BspACI	CCGC	5 cut(s)	162, 246, 260, 315, 318
BspANI	GGCC	1 cut(s)	360
BspCNI	CTCAG	1 cut(s)	439
BspFNI	CGCG	1 cut(s)	248
BspHI	TCATGA	1 cut(s)	328
BspLI	GGNNCC	4 cut(s)	109, 360, 361, 516
BspPI	GGATC	2 cut(s)	486, 509
BspT104I	TTCGAA	2 cut(s)	61, 138
BsrDI	GCAATG	1 cut(s)	28
BsrI	ACTGG	2 cut(s)	12, 228
BssECI	CCNNGG	4 cut(s)	104, 144, 190, 414
BssMI	GATC	2 cut(s)	478, 514
BssT1I	CCWWGG	1 cut(s)	414
Bst4CI	ACNGT	1 cut(s)	370
BstBI	TTCGAA	2 cut(s)	61, 138
BstC8I	GCNNGC	2 cut(s)	236, 250
BstDEI	CTNAG	2 cut(s)	447, 519
BstDSI	CCRYGG	1 cut(s)	190
BstF5I	GGATG	1 cut(s)	441
BstFNI	CGCG	1 cut(s)	248
BstKTI	GATC	2 cut(s)	481, 517
BstMBI	GATC	2 cut(s)	478, 514
BstMWI	GCNNNNNNNGC	7 cut(s)	32, 161, 240, 249, 287, 323, 332
BstSCI	CCNGG	3 cut(s)	103, 104, 144
BstSFI	CTRYAG	1 cut(s)	49
BstSLI	GKGCMC	1 cut(s)	362
BstUI	CGCG	1 cut(s)	248
BstV1I	GCAGC	7 cut(s)	22, 144, 163, 167, 170, 290, 302
BstX2I	RGATCY	1 cut(s)	514
BstYI	RGATCY	1 cut(s)	514
BsuRI	GGCC	1 cut(s)	360
BtgI	CCRYGG	1 cut(s)	190
BtsCI	GGATG	1 cut(s)	441
BtsIMutI	CAGTG	1 cut(s)	488
Cac8I	GCNNGC	2 cut(s)	236, 250
CciI	TCATGA	1 cut(s)	328
Cfr13I	GGNCC	3 cut(s)	108, 358, 359
Cfr9I	CCCGGG	1 cut(s)	104
CviAII	CATG	3 cut(s)	274, 284, 329
DdeI	CTNAG	2 cut(s)	447, 519
DpnI	GATC	2 cut(s)	480, 516
DpnII	GATC	2 cut(s)	478, 514
Ecl136II	GAGCTC	2 cut(s)	252, 342
Eco130I	CCWWGG	1 cut(s)	414
Eco24I	GRGCYC	4 cut(s)	105, 254, 344, 362
Eco47I	GGWCC	1 cut(s)	108
Eco53kI	GAGCTC	2 cut(s)	252, 342
Eco57I	CTGAAG	1 cut(s)	342
Eco88I	CYCGRG	1 cut(s)	104
EcoICRI	GAGCTC	2 cut(s)	252, 342
EcoO109I	RGGNCCY	1 cut(s)	359
EcoT14I	CCWWGG	1 cut(s)	414
EcoT38I	GRGCYC	4 cut(s)	105, 254, 344, 362
ErhI	CCWWGG	1 cut(s)	414
FaeI	CATG	3 cut(s)	277, 287, 332
FaiI	YATR	8 cut(s)	30, 51, 168, 275, 285, 330, 455, 494
FaqI	GGGAC	1 cut(s)	121
FatI	CATG	3 cut(s)	273, 283, 328
FauI	CCCGC	2 cut(s)	253, 322
Fnu4HI	GCNGC	9 cut(s)	36, 133, 156, 159, 162, 177, 279, 291, 318
FokI	GGATG	1 cut(s)	448
FriOI	GRGCYC	4 cut(s)	105, 254, 344, 362
Fsp4HI	GCNGC	9 cut(s)	36, 133, 156, 159, 162, 177, 279, 291, 318
FspBI	CTAG	2 cut(s)	18, 128
GluI	GCNGC	9 cut(s)	36, 133, 156, 159, 162, 177, 279, 291, 318
GsaI	CCCAGC	1 cut(s)	339
GsuI	CTGGAG	1 cut(s)	328
HaeIII	GGCC	1 cut(s)	360
HapII	CCGG	2 cut(s)	105, 146
Hin1II	CATG	3 cut(s)	277, 287, 332
HinfI	GANTC	6 cut(s)	120, 385, 407, 419, 449, 503
HpaII	CCGG	2 cut(s)	105, 146
HphI	GGTGA	3 cut(s)	238, 382, 402
Hpy166II	GTNNAC	2 cut(s)	194, 229
Hpy188I	TCNGA	2 cut(s)	91, 448
Hpy188III	TCNNGA	2 cut(s)	98, 329
Hpy8I	GTNNAC	2 cut(s)	194, 229
HpyCH4III	ACNGT	1 cut(s)	370
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	3 cut(s)	179, 439, 496
HpyF10VI	GCNNNNNNNGC	7 cut(s)	32, 161, 240, 249, 287, 323, 332
HpyF3I	CTNAG	2 cut(s)	447, 519
HpySE526I	ACGT	1 cut(s)	354
Hsp92II	CATG	3 cut(s)	277, 287, 332
Kzo9I	GATC	2 cut(s)	478, 514
LmnI	GCTCC	3 cut(s)	32, 339, 347
LpnPI	CCDG	9 cut(s)	25, 109, 118, 159, 209, 248, 321, 358, 450
Lsp1109I	GCAGC	7 cut(s)	22, 144, 163, 167, 170, 290, 302
LweI	GCATC	1 cut(s)	426
MaeI	CTAG	2 cut(s)	18, 128
MaeII	ACGT	1 cut(s)	354
MaeIII	GTNAC	2 cut(s)	364, 408
MalI	GATC	2 cut(s)	480, 516
MboI	GATC	2 cut(s)	478, 514
MflI	RGATCY	1 cut(s)	514
MhlI	GDGCHC	4 cut(s)	105, 254, 344, 362
MluCI	AATT	2 cut(s)	93, 390
MlyI	GAGTC	4 cut(s)	394, 413, 416, 458
MseI	TTAA	1 cut(s)	402
MslI	CAYNNNNRTG	2 cut(s)	189, 272
MspA1I	CMGCKG	1 cut(s)	320
MspI	CCGG	2 cut(s)	105, 146
MspR9I	CCNGG	3 cut(s)	105, 106, 146
Mva1269I	GAATGC	1 cut(s)	262
MvnI	CGCG	1 cut(s)	248
MwoI	GCNNNNNNNGC	7 cut(s)	32, 161, 240, 249, 287, 323, 332
NciI	CCSGG	3 cut(s)	105, 106, 146
NdeII	GATC	2 cut(s)	478, 514
NlaIII	CATG	3 cut(s)	277, 287, 332
NlaIV	GGNNCC	4 cut(s)	109, 360, 361, 516
NmeAIII	GCCGAG	1 cut(s)	408
NmuCI	GTSAC	2 cut(s)	364, 408
NspV	TTCGAA	2 cut(s)	61, 138
PagI	TCATGA	1 cut(s)	328
PcsI	WCGNNNNNNNCGW	1 cut(s)	360
PctI	GAATGC	1 cut(s)	262
PfeI	GAWTC	2 cut(s)	120, 503
PflMI	CCANNNNNTGG	1 cut(s)	432
PkrI	GCNGC	9 cut(s)	37, 134, 157, 160, 163, 178, 280, 292, 319
PleI	GAGTC	4 cut(s)	393, 413, 415, 457
PpsI	GAGTC	4 cut(s)	393, 413, 415, 457
Psp124BI	GAGCTC	2 cut(s)	254, 344
PspFI	CCCAGC	1 cut(s)	335
PspN4I	GGNNCC	4 cut(s)	109, 360, 361, 516
PspOMI	GGGCCC	1 cut(s)	358
PspPI	GGNCC	3 cut(s)	108, 358, 359
PsuI	RGATCY	1 cut(s)	514
RseI	CAYNNNNRTG	2 cut(s)	189, 272
SacI	GAGCTC	2 cut(s)	254, 344
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	9 cut(s)	36, 133, 156, 159, 162, 177, 279, 291, 318
Sau3AI	GATC	2 cut(s)	478, 514
Sau96I	GGNCC	3 cut(s)	108, 358, 359
SchI	GAGTC	4 cut(s)	394, 413, 416, 458
ScrFI	CCNGG	3 cut(s)	105, 106, 146
SduI	GDGCHC	4 cut(s)	105, 254, 344, 362
SetI	ASST	8 cut(s)	37, 137, 254, 302, 328, 344, 350, 357
SfaNI	GCATC	1 cut(s)	426
SfcI	CTRYAG	1 cut(s)	49
SfuI	TTCGAA	2 cut(s)	61, 138
SinI	GGWCC	1 cut(s)	108
SmaI	CCCGGG	1 cut(s)	106
SmiMI	CAYNNNNRTG	2 cut(s)	189, 272
SmlI	CTYRAG	1 cut(s)	295
SmoI	CTYRAG	1 cut(s)	295
Sse9I	AATT	2 cut(s)	93, 390
SsiI	CCGC	5 cut(s)	162, 246, 260, 315, 318
SspMI	CTAG	2 cut(s)	18, 128
SstI	GAGCTC	2 cut(s)	254, 344
StyD4I	CCNGG	3 cut(s)	103, 104, 144
StyI	CCWWGG	1 cut(s)	414
TaaI	ACNGT	1 cut(s)	370
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	4 cut(s)	61, 138, 254, 350
TasI	AATT	2 cut(s)	93, 390
TauI	GCSGC	2 cut(s)	164, 320
TfiI	GAWTC	2 cut(s)	120, 503
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TscAI	CASTG	1 cut(s)	488
TseFI	GTSAC	2 cut(s)	364, 408
TseI	GCWGC	7 cut(s)	35, 132, 155, 158, 176, 278, 290
Tsp45I	GTSAC	2 cut(s)	364, 408
TspDTI	ATGAA	1 cut(s)	300
TspGWI	ACGGA	1 cut(s)	179
TspMI	CCCGGG	1 cut(s)	104
TspRI	CASTG	1 cut(s)	488
Van91I	CCANNNNNTGG	1 cut(s)	432
VpaK11BI	GGWCC	1 cut(s)	108
XapI	RAATTY	2 cut(s)	93, 390
XcmI	CCANNNNNNNNNTGG	1 cut(s)	352
XmaI	CCCGGG	1 cut(s)	104
XspI	CTAG	2 cut(s)	18, 128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.