Rroxscaffold_3G00229000

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0013884
Physical Location & Seq
Reverse (-)
13533340 .. 13534967
1628 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00229000.1

Sequence Viewer

Length: 591 bp
ATGGGAGAGCCCAATTCCAGCAGCAGCACTGTCTACGGTGCTGCAACTTCTGCCTACAGAGGTGTCCGCAAGCGAAAATGGGGCAAGTGGGTGTCTGAAATCCGCGAGCCGGGGAAGAAAACCCGAATTTGGTTAGGGAGCTTCGAGACACCCGAGATGGCTGCCGCGGCATACGACGTGGCAGCATTGCATTTCCGAGGACGTGAGGCCAGGCTCAACTTCCCGGAACTTGTCAACTACCTGCCACGCCCTGCCAGCTCGAGCCCCGACGACATACGCATGGCTGCGCATGAAGCGGCTTTAAGGCTGAGGAGTAATGATGGTGACACTACTAATTCTTTGGGGGCAGCAGGTCATTGTGACGTTGGGAGCTCTAGCTCGAGCGGGGTGGCTCCGGTGACGGTGAGGCTGTCACCGAGTCAAATTCAGGCAATTAACGAGTCTCCCTTGGACTCGCCCAAGATGTGGATGCAAATGTCTGAGGCTCTTATGTTTGAGGAATCCATGATGTTCTCTAATGACTTCGACGATGAGGGCATGAATAGTAATCAATGGGAGAATATTCAACAAGATTCTCTGTGGGATCCTTAG

Protein Analysis

196

Amino Acids

21.62

Weight (kDa)

5.0

Isoelectric Point (pI)

57.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 18 - 67 1.9e-13 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013884)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71450
fragaria_vesca FvH4_5g33220
malus_domestica MD08G1213600.v1.1 MD15G1396900.v1.1
prunus_persica Prupe.1G545700_v2.0.a1
pyrus_communis pycom08g18340
rosa_chinensis RchiOBHm_Chr7g0231631
rosa_laevigata RLG00000001404
rosa_multiflora Rmu_sc0003063.1_g000032 Rmu_sc0004618.1_g000053
rosa_roxburghii Rroxscaffold_3G00229000
rosa_rugosa Rorug07G0267800
rosa_samantha Rh7AG422300 Rh7BG396700 Rh7CG442600 Rh7DG414700
rosa_wichuraiana Rw7G034820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 288
Acc36I ACCTGC 2 cut(s) 249, 341
AccB7I CCANNNNNTGG 1 cut(s) 465
AccBSI CCGCTC 1 cut(s) 384
AccI GTMKAC 1 cut(s) 33
AccII CGCG 2 cut(s) 105, 167
AciI CCGC 6 cut(s) 67, 103, 165, 167, 296, 384
AclWI GGATC 1 cut(s) 578
AcsI RAATTY 2 cut(s) 126, 423
AfiI CCNNNNNNNGG 3 cut(s) 109, 129, 465
AgsI TTSAA 1 cut(s) 566
AjiI CACGTC 2 cut(s) 178, 203
AjnI CCWGG 1 cut(s) 209
AluBI AGCT 4 cut(s) 141, 258, 372, 378
AluI AGCT 4 cut(s) 141, 258, 372, 378
Alw21I GWGCWC 1 cut(s) 374
Alw26I GTCTC 2 cut(s) 140, 447
AlwI GGATC 1 cut(s) 578
Ama87I CYCGRG 3 cut(s) 152, 259, 379
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 7 cut(s) 21, 24, 41, 161, 182, 284, 347
ApoI RAATTY 2 cut(s) 126, 423
AspLEI GCGC 1 cut(s) 289
AsuC2I CCSGG 2 cut(s) 111, 224
AsuHPI GGTGA 4 cut(s) 335, 405, 409, 415
AvaI CYCGRG 3 cut(s) 152, 259, 379
BamHI GGATCC 1 cut(s) 583
BanII GRGCYC 3 cut(s) 12, 266, 374
Bbv12I GWGCWC 1 cut(s) 374
BbvCI CCTCAGC 1 cut(s) 308
BbvI GCAGC 7 cut(s) 28, 33, 36, 148, 194, 271, 359
BccI CCATC 2 cut(s) 151, 314
BcgI CGANNNNNNTGC 2 cut(s) 143, 177
BciT130I CCWGG 1 cut(s) 211
BcnI CCSGG 2 cut(s) 111, 224
BcoDI GTCTC 2 cut(s) 140, 447
BfaI CTAG 1 cut(s) 375
BfmI CTRYAG 1 cut(s) 55
BfuAI ACCTGC 2 cut(s) 249, 341
Bme1390I CCNGG 3 cut(s) 111, 211, 224
BmeT110I CYCGRG 3 cut(s) 152, 259, 379
BmgBI CACGTC 2 cut(s) 178, 203
BmiI GGNNCC 2 cut(s) 393, 585
BmrFI CCNGG 3 cut(s) 111, 211, 224
BmsI GCATC 1 cut(s) 459
Bpu10I CCTNAGC 1 cut(s) 308
BpuMI CCSGG 2 cut(s) 111, 224
BsaJI CCNNGG 4 cut(s) 110, 165, 196, 447
BsaWI WCCGGW 1 cut(s) 394
Bsc4I CCNNNNNNNGG 3 cut(s) 109, 129, 465
Bse3DI GCAATG 1 cut(s) 185
BseBI CCWGG 1 cut(s) 211
BseDI CCNNGG 4 cut(s) 110, 165, 196, 447
BseGI GGATG 1 cut(s) 474
BseLI CCNNNNNNNGG 3 cut(s) 109, 129, 465
BseMI GCAATG 1 cut(s) 185
BseMII CTCAG 2 cut(s) 299, 471
BseRI GAGGAG 1 cut(s) 325
BseXI GCAGC 7 cut(s) 28, 33, 36, 148, 194, 271, 359
Bsh1236I CGCG 2 cut(s) 105, 167
BshFI GGCC 1 cut(s) 209
BsiHKAI GWGCWC 1 cut(s) 374
BsiHKCI CYCGRG 3 cut(s) 152, 259, 379
BsiSI CCGG 3 cut(s) 110, 224, 395
BslI CCNNNNNNNGG 3 cut(s) 109, 129, 465
BsmAI GTCTC 2 cut(s) 140, 447
BsnI GGCC 1 cut(s) 209
BsoBI CYCGRG 3 cut(s) 152, 259, 379
Bsp1286I GDGCHC 3 cut(s) 12, 266, 374
Bsp143I GATC 1 cut(s) 583
BspACI CCGC 6 cut(s) 67, 103, 165, 167, 296, 384
BspANI GGCC 1 cut(s) 209
BspCNI CTCAG 2 cut(s) 300, 472
BspFNI CGCG 2 cut(s) 105, 167
BspLI GGNNCC 2 cut(s) 393, 585
BspMI ACCTGC 2 cut(s) 249, 341
BspPI GGATC 1 cut(s) 578
BsrBI CCGCTC 1 cut(s) 384
BsrDI GCAATG 1 cut(s) 185
BssECI CCNNGG 4 cut(s) 110, 165, 196, 447
BssMI GATC 1 cut(s) 583
BssT1I CCWWGG 1 cut(s) 447
Bst2UI CCWGG 1 cut(s) 211
Bst4CI ACNGT 3 cut(s) 31, 38, 403
BstAPI GCANNNNNTGC 1 cut(s) 50
BstC8I GCNNGC 3 cut(s) 71, 107, 256
BstDEI CTNAG 3 cut(s) 308, 480, 588
BstDSI CCRYGG 1 cut(s) 165
BstF5I GGATG 1 cut(s) 474
BstFNI CGCG 2 cut(s) 105, 167
BstHHI GCGC 1 cut(s) 289
BstKTI GATC 1 cut(s) 586
BstMAI GTCTC 2 cut(s) 140, 447
BstMBI GATC 1 cut(s) 583
BstMWI GCNNNNNNNGC 4 cut(s) 50, 167, 255, 293
BstNI CCWGG 1 cut(s) 211
BstSCI CCNGG 3 cut(s) 109, 209, 222
BstSFI CTRYAG 1 cut(s) 55
BstUI CGCG 2 cut(s) 105, 167
BstV1I GCAGC 7 cut(s) 28, 33, 36, 148, 194, 271, 359
BstX2I RGATCY 1 cut(s) 583
BstYI RGATCY 1 cut(s) 583
BsuRI GGCC 1 cut(s) 209
BtgI CCRYGG 1 cut(s) 165
BtrI CACGTC 2 cut(s) 178, 203
BtsCI GGATG 1 cut(s) 474
BtsIMutI CAGTG 1 cut(s) 27
BveI ACCTGC 2 cut(s) 249, 341
Cac8I GCNNGC 3 cut(s) 71, 107, 256
CfoI GCGC 1 cut(s) 289
Cfr42I CCGCGG 1 cut(s) 168
CviAII CATG 4 cut(s) 280, 290, 505, 538
DdeI CTNAG 3 cut(s) 308, 480, 588
DpnI GATC 1 cut(s) 585
DpnII GATC 1 cut(s) 583
Ecl136II GAGCTC 1 cut(s) 372
Eco130I CCWWGG 1 cut(s) 447
Eco24I GRGCYC 3 cut(s) 12, 266, 374
Eco53kI GAGCTC 1 cut(s) 372
Eco88I CYCGRG 3 cut(s) 152, 259, 379
EcoICRI GAGCTC 1 cut(s) 372
EcoRII CCWGG 1 cut(s) 209
EcoT14I CCWWGG 1 cut(s) 447
EcoT38I GRGCYC 3 cut(s) 12, 266, 374
ErhI CCWWGG 1 cut(s) 447
FaeI CATG 4 cut(s) 283, 293, 508, 541
FaiI YATR 7 cut(s) 172, 275, 281, 291, 491, 506, 539
FatI CATG 4 cut(s) 279, 289, 504, 537
FauI CCCGC 1 cut(s) 377
FblI GTMKAC 1 cut(s) 33
FokI GGATG 1 cut(s) 481
FriOI GRGCYC 3 cut(s) 12, 266, 374
FspBI CTAG 1 cut(s) 375
FspI TGCGCA 1 cut(s) 288
GlaI GCGC 1 cut(s) 288
HaeIII GGCC 1 cut(s) 209
HapII CCGG 3 cut(s) 110, 224, 395
HhaI GCGC 1 cut(s) 289
Hin1II CATG 4 cut(s) 283, 293, 508, 541
Hin6I GCGC 1 cut(s) 287
HinP1I GCGC 1 cut(s) 287
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HinfI GANTC 5 cut(s) 418, 440, 452, 500, 572
HpaII CCGG 3 cut(s) 110, 224, 395
HphI GGTGA 4 cut(s) 335, 405, 409, 415
Hpy166II GTNNAC 2 cut(s) 34, 235
Hpy188I TCNGA 3 cut(s) 97, 197, 481
Hpy188III TCNNGA 1 cut(s) 145
Hpy8I GTNNAC 2 cut(s) 34, 235
Hpy99I CGWCG 3 cut(s) 179, 272, 530
HpyCH4III ACNGT 3 cut(s) 31, 38, 403
HpyCH4IV ACGT 3 cut(s) 177, 202, 363
HpyCH4V TGCA 3 cut(s) 44, 190, 472
HpyF10VI GCNNNNNNNGC 4 cut(s) 50, 167, 255, 293
HpyF3I CTNAG 3 cut(s) 308, 480, 588
HpySE526I ACGT 3 cut(s) 177, 202, 363
Hsp92II CATG 4 cut(s) 283, 293, 508, 541
HspAI GCGC 1 cut(s) 287
KspI CCGCGG 1 cut(s) 168
Kzo9I GATC 1 cut(s) 583
LmnI GCTCC 3 cut(s) 138, 369, 397
Lsp1109I GCAGC 7 cut(s) 28, 33, 36, 148, 194, 271, 359
LweI GCATC 1 cut(s) 459
MaeI CTAG 1 cut(s) 375
MaeII ACGT 3 cut(s) 177, 202, 363
MaeIII GTNAC 4 cut(s) 323, 359, 397, 411
MalI GATC 1 cut(s) 585
MbiI CCGCTC 1 cut(s) 384
MboI GATC 1 cut(s) 583
MboII GAAGA 1 cut(s) 127
MflI RGATCY 1 cut(s) 583
MhlI GDGCHC 3 cut(s) 12, 266, 374
MluCI AATT 5 cut(s) 13, 126, 334, 423, 432
MlyI GAGTC 3 cut(s) 427, 446, 449
MnlI CCTC 8 cut(s) 53, 191, 199, 303, 399, 475, 490, 526
MseI TTAA 2 cut(s) 302, 435
MslI CAYNNNNRTG 1 cut(s) 278
MspA1I CMGCKG 1 cut(s) 167
MspI CCGG 3 cut(s) 110, 224, 395
MspR9I CCNGG 3 cut(s) 111, 211, 224
MvaI CCWGG 1 cut(s) 211
MvnI CGCG 2 cut(s) 105, 167
MwoI GCNNNNNNNGC 4 cut(s) 50, 167, 255, 293
NciI CCSGG 2 cut(s) 111, 224
NdeII GATC 1 cut(s) 583
NlaIII CATG 4 cut(s) 283, 293, 508, 541
NlaIV GGNNCC 2 cut(s) 393, 585
NmuCI GTSAC 4 cut(s) 323, 359, 397, 411
NsbI TGCGCA 1 cut(s) 288
PaeR7I CTCGAG 2 cut(s) 259, 379
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PfeI GAWTC 2 cut(s) 500, 572
PflMI CCANNNNNTGG 1 cut(s) 465
PfoI TCCNGGA 1 cut(s) 222
PleI GAGTC 3 cut(s) 426, 446, 448
PpsI GAGTC 3 cut(s) 426, 446, 448
Psp124BI GAGCTC 1 cut(s) 374
Psp6I CCWGG 1 cut(s) 209
PspGI CCWGG 1 cut(s) 209
PspN4I GGNNCC 2 cut(s) 393, 585
PspXI VCTCGAGB 2 cut(s) 259, 379
PsuI RGATCY 1 cut(s) 583
RseI CAYNNNNRTG 1 cut(s) 278
SacI GAGCTC 1 cut(s) 374
SacII CCGCGG 1 cut(s) 168
SaqAI TTAA 2 cut(s) 302, 435
Sau3AI GATC 1 cut(s) 583
SchI GAGTC 3 cut(s) 427, 446, 449
ScrFI CCNGG 3 cut(s) 111, 211, 224
SduI GDGCHC 3 cut(s) 12, 266, 374
SfaNI GCATC 1 cut(s) 459
SfcI CTRYAG 1 cut(s) 55
Sfr274I CTCGAG 2 cut(s) 259, 379
Sfr303I CCGCGG 1 cut(s) 168
SgrBI CCGCGG 1 cut(s) 168
SlaI CTCGAG 2 cut(s) 259, 379
SmiMI CAYNNNNRTG 1 cut(s) 278
SmlI CTYRAG 2 cut(s) 259, 379
SmoI CTYRAG 2 cut(s) 259, 379
Sse9I AATT 5 cut(s) 13, 126, 334, 423, 432
SsiI CCGC 6 cut(s) 67, 103, 165, 167, 296, 384
SspI AATATT 1 cut(s) 562
SspMI CTAG 1 cut(s) 375
SstI GAGCTC 1 cut(s) 374
StyD4I CCNGG 3 cut(s) 109, 209, 222
StyI CCWWGG 1 cut(s) 447
TaaI ACNGT 3 cut(s) 31, 38, 403
TaiI ACGT 3 cut(s) 180, 205, 366
TaqI TCGA 4 cut(s) 144, 260, 380, 525
TasI AATT 5 cut(s) 13, 126, 334, 423, 432
TauI GCSGC 3 cut(s) 167, 170, 299
TfiI GAWTC 2 cut(s) 500, 572
Tru1I TTAA 2 cut(s) 302, 435
Tru9I TTAA 2 cut(s) 302, 435
TscAI CASTG 1 cut(s) 34
TseFI GTSAC 4 cut(s) 323, 359, 397, 411
TseI GCWGC 7 cut(s) 21, 24, 41, 161, 182, 284, 347
Tsp45I GTSAC 4 cut(s) 323, 359, 397, 411
TspDTI ATGAA 2 cut(s) 306, 554
TspRI CASTG 1 cut(s) 34
Van91I CCANNNNNTGG 1 cut(s) 465
XapI RAATTY 2 cut(s) 126, 423
XhoI CTCGAG 2 cut(s) 259, 379
XmiI GTMKAC 1 cut(s) 33
XspI CTAG 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.