MD15G1396900.v1.1

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0013884
Physical Location & Seq
Reverse (-)
49637955 .. 49638497
543 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1396900.v1.1.491

Sequence Viewer

Length: 543 bp
ATGGGGGATCCCGCCAATTCTAGCAATGCCTATGGCCCTGCCTCTTCGGTCTACAGAGGCGTGCGCAAGAGAAAATGGGGCAAATGGGTGTCGGAAATCCGCGAGCCTGGAACCAAAACCCGAATTTGGTTAGGCAGCTTCGAGACTCCAGAGATGGCGGCCGCAGCGTATGATGTGGCCGCGTTGCATTTCCGGGGTCGCGATGCGAGGCTCAACTTCCCTGAACTTGCCAATAACTTGCCTCGCCCTGCCAGTTCCACCTCTGATGACATACGCATGGCAGCACATGAAGCAGCCTTGATGCTGAGAGGTAGTAGTGGTGGTGGTGGTGGTGCGGTTGAAGGTCATGAGGTTGGGGGCTCCAGCTCAAACGTCGGGCAGGTCAGGGTGAGGCTGTCGCCGAGTCAAATCCAGGCAATTAACGAGTCTCCCTTGGACTCGCCCAAAATGTGGATGCAAATGGCAGAGCCTACGATGTTCTCTAATGACTTTTTTGAGAATCAGTGGGAGGATCTGCAGAATGACTCTCTTTGGGATCCTTAA

Protein Analysis

181

Amino Acids

19.69

Weight (kDa)

5.4

Isoelectric Point (pI)

48.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 16 - 66 9.5e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013884)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71450
fragaria_vesca FvH4_5g33220
malus_domestica MD08G1213600.v1.1 MD15G1396900.v1.1
prunus_persica Prupe.1G545700_v2.0.a1
pyrus_communis pycom08g18340
rosa_chinensis RchiOBHm_Chr7g0231631
rosa_laevigata RLG00000001404
rosa_multiflora Rmu_sc0003063.1_g000032 Rmu_sc0004618.1_g000053
rosa_roxburghii Rroxscaffold_3G00229000
rosa_rugosa Rorug07G0267800
rosa_samantha Rh7AG422300 Rh7BG396700 Rh7CG442600 Rh7DG414700
rosa_wichuraiana Rw7G034820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 65
Acc36I ACCTGC 1 cut(s) 370
AccB7I CCANNNNNTGG 1 cut(s) 450
AccI GTMKAC 1 cut(s) 51
AccII CGCG 3 cut(s) 102, 182, 201
AciI CCGC 6 cut(s) 12, 100, 158, 162, 180, 335
AclWI GGATC 4 cut(s) 2, 15, 519, 530
AcoI YGGCCR 2 cut(s) 159, 177
AcsI RAATTY 1 cut(s) 123
AfiI CCNNNNNNNGG 2 cut(s) 126, 450
AgsI TTSAA 1 cut(s) 341
AjnI CCWGG 2 cut(s) 106, 411
AluBI AGCT 2 cut(s) 138, 366
AluI AGCT 2 cut(s) 138, 366
Alw26I GTCTC 2 cut(s) 137, 432
AlwI GGATC 4 cut(s) 2, 15, 519, 530
AoxI GGCC 3 cut(s) 34, 159, 177
ApeKI GCWGC 4 cut(s) 135, 164, 281, 293
ApoI RAATTY 1 cut(s) 123
AspLEI GCGC 1 cut(s) 66
AspS9I GGNCC 1 cut(s) 35
AsuC2I CCSGG 1 cut(s) 194
AsuHPI GGTGA 1 cut(s) 400
BamHI GGATCC 2 cut(s) 7, 535
BanII GRGCYC 1 cut(s) 362
BbvI GCAGC 4 cut(s) 147, 176, 293, 305
BccI CCATC 1 cut(s) 148
BciT130I CCWGG 2 cut(s) 108, 413
BcnI CCSGG 1 cut(s) 194
BcoDI GTCTC 2 cut(s) 137, 432
BfaI CTAG 1 cut(s) 21
BfmI CTRYAG 2 cut(s) 52, 515
BfuAI ACCTGC 1 cut(s) 370
BisI GCNGC 7 cut(s) 136, 159, 162, 165, 180, 282, 294
BlsI GCNGC 7 cut(s) 137, 160, 163, 166, 181, 283, 295
Bme1390I CCNGG 3 cut(s) 108, 194, 413
BmgT120I GGNCC 1 cut(s) 35
BmiI GGNNCC 4 cut(s) 9, 112, 361, 537
BmrFI CCNGG 3 cut(s) 108, 194, 413
BmsI GCATC 3 cut(s) 193, 291, 444
BpmI CTGGAG 2 cut(s) 132, 346
BpuMI CCSGG 1 cut(s) 194
BsaJI CCNNGG 2 cut(s) 193, 432
Bsc4I CCNNNNNNNGG 2 cut(s) 126, 450
Bse1I ACTGG 1 cut(s) 252
Bse3DI GCAATG 1 cut(s) 31
BseBI CCWGG 2 cut(s) 108, 413
BseDI CCNNGG 2 cut(s) 193, 432
BseGI GGATG 1 cut(s) 459
BseLI CCNNNNNNNGG 2 cut(s) 126, 450
BseMI GCAATG 1 cut(s) 31
BseMII CTCAG 1 cut(s) 296
BseNI ACTGG 1 cut(s) 252
BseX3I CGGCCG 1 cut(s) 159
BseXI GCAGC 4 cut(s) 147, 176, 293, 305
Bsh1236I CGCG 3 cut(s) 102, 182, 201
Bsh1285I CGRYCG 1 cut(s) 162
BshFI GGCC 3 cut(s) 36, 161, 179
BsiEI CGRYCG 1 cut(s) 162
BsiSI CCGG 1 cut(s) 193
BslI CCNNNNNNNGG 2 cut(s) 126, 450
BsmAI GTCTC 2 cut(s) 137, 432
BsnI GGCC 3 cut(s) 36, 161, 179
Bsp1286I GDGCHC 1 cut(s) 362
Bsp143I GATC 3 cut(s) 7, 511, 535
Bsp68I TCGCGA 1 cut(s) 201
BspACI CCGC 6 cut(s) 12, 100, 158, 162, 180, 335
BspANI GGCC 3 cut(s) 36, 161, 179
BspCNI CTCAG 1 cut(s) 297
BspFNI CGCG 3 cut(s) 102, 182, 201
BspHI TCATGA 1 cut(s) 346
BspLI GGNNCC 4 cut(s) 9, 112, 361, 537
BspMAI CTGCAG 1 cut(s) 519
BspMI ACCTGC 1 cut(s) 370
BspPI GGATC 4 cut(s) 2, 15, 519, 530
BsrDI GCAATG 1 cut(s) 31
BsrI ACTGG 1 cut(s) 252
BssECI CCNNGG 2 cut(s) 193, 432
BssMI GATC 3 cut(s) 7, 511, 535
BssT1I CCWWGG 1 cut(s) 432
Bst2UI CCWGG 2 cut(s) 108, 413
Bst6I CTCTTC 1 cut(s) 49
BstC8I GCNNGC 2 cut(s) 62, 104
BstDEI CTNAG 1 cut(s) 305
BstF5I GGATG 1 cut(s) 459
BstFNI CGCG 3 cut(s) 102, 182, 201
BstHHI GCGC 1 cut(s) 66
BstKTI GATC 3 cut(s) 10, 514, 538
BstMAI GTCTC 2 cut(s) 137, 432
BstMBI GATC 3 cut(s) 7, 511, 535
BstMCI CGRYCG 1 cut(s) 162
BstMWI GCNNNNNNNGC 2 cut(s) 164, 290
BstNI CCWGG 2 cut(s) 108, 413
BstSCI CCNGG 3 cut(s) 106, 192, 411
BstSFI CTRYAG 2 cut(s) 52, 515
BstUI CGCG 3 cut(s) 102, 182, 201
BstV1I GCAGC 4 cut(s) 147, 176, 293, 305
BstX2I RGATCY 3 cut(s) 7, 511, 535
BstYI RGATCY 3 cut(s) 7, 511, 535
BstZI CGGCCG 1 cut(s) 159
BsuRI GGCC 3 cut(s) 36, 161, 179
BtgZI GCGATG 1 cut(s) 216
BtsCI GGATG 1 cut(s) 459
BtsIMutI CAGTG 1 cut(s) 509
BtuMI TCGCGA 1 cut(s) 201
BveI ACCTGC 1 cut(s) 370
Cac8I GCNNGC 2 cut(s) 62, 104
CciI TCATGA 1 cut(s) 346
CciNI GCGGCCGC 1 cut(s) 159
CfoI GCGC 1 cut(s) 66
Cfr13I GGNCC 1 cut(s) 35
CviAII CATG 3 cut(s) 277, 287, 347
DdeI CTNAG 1 cut(s) 305
DpnI GATC 3 cut(s) 9, 513, 537
DpnII GATC 3 cut(s) 7, 511, 535
EaeI YGGCCR 2 cut(s) 159, 177
EagI CGGCCG 1 cut(s) 159
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
EclXI CGGCCG 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 432
Eco24I GRGCYC 1 cut(s) 362
Eco52I CGGCCG 1 cut(s) 159
EcoRII CCWGG 2 cut(s) 106, 411
EcoT14I CCWWGG 1 cut(s) 432
EcoT38I GRGCYC 1 cut(s) 362
ErhI CCWWGG 1 cut(s) 432
FaeI CATG 3 cut(s) 280, 290, 350
FaiI YATR 6 cut(s) 33, 171, 272, 278, 288, 348
FatI CATG 3 cut(s) 276, 286, 346
FauI CCCGC 1 cut(s) 19
FblI GTMKAC 1 cut(s) 51
Fnu4HI GCNGC 7 cut(s) 136, 159, 162, 165, 180, 282, 294
FokI GGATG 1 cut(s) 466
FriOI GRGCYC 1 cut(s) 362
Fsp4HI GCNGC 7 cut(s) 136, 159, 162, 165, 180, 282, 294
FspBI CTAG 1 cut(s) 21
FspI TGCGCA 1 cut(s) 65
GlaI GCGC 1 cut(s) 65
GluI GCNGC 7 cut(s) 136, 159, 162, 165, 180, 282, 294
GsuI CTGGAG 2 cut(s) 132, 346
HaeIII GGCC 3 cut(s) 36, 161, 179
HapII CCGG 1 cut(s) 193
HhaI GCGC 1 cut(s) 66
Hin1II CATG 3 cut(s) 280, 290, 350
Hin6I GCGC 1 cut(s) 64
HinP1I GCGC 1 cut(s) 64
HinfI GANTC 6 cut(s) 145, 403, 425, 437, 499, 524
HpaII CCGG 1 cut(s) 193
HphI GGTGA 1 cut(s) 400
Hpy166II GTNNAC 1 cut(s) 52
Hpy188I TCNGA 2 cut(s) 94, 265
Hpy188III TCNNGA 4 cut(s) 142, 149, 200, 347
Hpy8I GTNNAC 1 cut(s) 52
Hpy99I CGWCG 1 cut(s) 377
HpyAV CCTTC 1 cut(s) 335
HpyCH4IV ACGT 1 cut(s) 372
HpyCH4V TGCA 3 cut(s) 187, 457, 517
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 290
HpyF3I CTNAG 1 cut(s) 305
HpySE526I ACGT 1 cut(s) 372
Hsp92II CATG 3 cut(s) 280, 290, 350
HspAI GCGC 1 cut(s) 64
Kzo9I GATC 3 cut(s) 7, 511, 535
LmnI GCTCC 1 cut(s) 365
Lsp1109I GCAGC 4 cut(s) 147, 176, 293, 305
LweI GCATC 3 cut(s) 193, 291, 444
MaeI CTAG 1 cut(s) 21
MaeII ACGT 1 cut(s) 372
MalI GATC 3 cut(s) 9, 513, 537
MboI GATC 3 cut(s) 7, 511, 535
MboII GAAGA 1 cut(s) 36
MflI RGATCY 3 cut(s) 7, 511, 535
MhlI GDGCHC 1 cut(s) 362
MluCI AATT 3 cut(s) 16, 123, 417
MlyI GAGTC 5 cut(s) 139, 412, 431, 434, 518
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 9 cut(s) 50, 52, 201, 252, 271, 302, 343, 384, 502
MseI TTAA 2 cut(s) 420, 541
MslI CAYNNNNRTG 1 cut(s) 275
MspI CCGG 1 cut(s) 193
MspR9I CCNGG 3 cut(s) 108, 194, 413
MvaI CCWGG 2 cut(s) 108, 413
MvnI CGCG 3 cut(s) 102, 182, 201
MwoI GCNNNNNNNGC 2 cut(s) 164, 290
NciI CCSGG 1 cut(s) 194
NdeII GATC 3 cut(s) 7, 511, 535
NlaIII CATG 3 cut(s) 280, 290, 350
NlaIV GGNNCC 4 cut(s) 9, 112, 361, 537
NmeAIII GCCGAG 1 cut(s) 426
NotI GCGGCCGC 1 cut(s) 159
NruI TCGCGA 1 cut(s) 201
NsbI TGCGCA 1 cut(s) 65
PagI TCATGA 1 cut(s) 346
PfeI GAWTC 1 cut(s) 499
PflMI CCANNNNNTGG 1 cut(s) 450
PkrI GCNGC 7 cut(s) 137, 160, 163, 166, 181, 283, 295
PleI GAGTC 5 cut(s) 139, 411, 431, 433, 518
PpsI GAGTC 5 cut(s) 139, 411, 431, 433, 518
Psp6I CCWGG 2 cut(s) 106, 411
PspGI CCWGG 2 cut(s) 106, 411
PspN4I GGNNCC 4 cut(s) 9, 112, 361, 537
PspPI GGNCC 1 cut(s) 35
PstI CTGCAG 1 cut(s) 519
PsuI RGATCY 3 cut(s) 7, 511, 535
RruI TCGCGA 1 cut(s) 201
RseI CAYNNNNRTG 1 cut(s) 275
SaqAI TTAA 2 cut(s) 420, 541
SatI GCNGC 7 cut(s) 136, 159, 162, 165, 180, 282, 294
Sau3AI GATC 3 cut(s) 7, 511, 535
Sau96I GGNCC 1 cut(s) 35
SchI GAGTC 5 cut(s) 139, 412, 431, 434, 518
ScrFI CCNGG 3 cut(s) 108, 194, 413
SduI GDGCHC 1 cut(s) 362
SetI ASST 8 cut(s) 140, 263, 313, 346, 354, 368, 375, 384
SfaNI GCATC 3 cut(s) 193, 291, 444
SfcI CTRYAG 2 cut(s) 52, 515
SmiMI CAYNNNNRTG 1 cut(s) 275
Sse9I AATT 3 cut(s) 16, 123, 417
SsiI CCGC 6 cut(s) 12, 100, 158, 162, 180, 335
SspMI CTAG 1 cut(s) 21
StyD4I CCNGG 3 cut(s) 106, 192, 411
StyI CCWWGG 1 cut(s) 432
TaiI ACGT 1 cut(s) 375
TaqI TCGA 1 cut(s) 141
TaqII GACCGA 1 cut(s) 37
TasI AATT 3 cut(s) 16, 123, 417
TauI GCSGC 3 cut(s) 161, 164, 182
TfiI GAWTC 1 cut(s) 499
Tru1I TTAA 2 cut(s) 420, 541
Tru9I TTAA 2 cut(s) 420, 541
TscAI CASTG 1 cut(s) 509
TseI GCWGC 4 cut(s) 135, 164, 281, 293
TspDTI ATGAA 1 cut(s) 303
TspRI CASTG 1 cut(s) 509
Van91I CCANNNNNTGG 1 cut(s) 450
XapI RAATTY 1 cut(s) 123
XmiI GTMKAC 1 cut(s) 51
XspI CTAG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.