AT1G71780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014414
Physical Location & Seq
Reverse (-)
26994977 .. 26996673
1697 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G71780.1

Sequence Viewer

Length: 594 bp
ATGTCATCGATGACGGAGAAGGAGAAGGAGAGAGATCCACCACCACCACATCAAGAGATTGAAGAGACTACTCCGTTGCTCGAAAATTCTCAACCGGAAAGTGAATTGAGATCGACGACCGCGGCGGCGAAGGTTCCTGAGGTGGAGATTCATCTGTATAAGTGTGGAAAAGGTCCGATCGATGTGTTCAAGTCAAATCTCGGCGGTTATGAGCAGGATCAGCTCGAGGTTCGATCTATTCTTGAGAAATATGGCTTGAAAGCAATCTTCGCTTTCAACGTTGAGAAAGGTCGTGCTGTTCCGATCAGATTTCACCCTAGGAATGGTCGGTCTGTGTTGCCTTATAGGGATGGTGCCGTCATTTACATCGACGGTGAACCTCAGGATTCCCTGCTCAAACCCATCACCAGAATCATTCTCGGAGTTGTGATTGTTACGCTCTTAATAACATTTCTATTGAAAGACCCTCCAGCTTGGATCAAGAACAACATCTCCATTGGGACCTTTCCTCCATGGGTGCTCGCATGCATAGTTATAGTTTTCACTCGAGCTAGAAAGAGAACCAGGGACTTCTTCAAGAAGTATGGCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

22.4

Weight (kDa)

9.02

Isoelectric Point (pI)

48.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014414)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71780
fragaria_vesca FvH4_2g12791
malus_domestica MD05G1036200.v1.1 MD10G1038300.v1.1
prunus_persica Prupe.8G044500_v2.0.a1 Prupe.8G044500_v2.0.a1
pyrus_communis pycom10g02630
rosa_chinensis RchiOBHm_Chr6g0273681
rosa_laevigata RLG00000013600
rosa_multiflora Rmu_sc0021426.1_g000002
rosa_roxburghii Rroxscaffold_7G00195130
rosa_rugosa Rorug06G0077200
rosa_samantha Rh6AG191500 Rh6BG195600 Rh6CG195100 Rh6DG186900
rosa_wichuraiana Rw6G016760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 353
AccII CGCG 1 cut(s) 122
AciI CCGC 4 cut(s) 120, 122, 125, 204
AclI AACGTT 1 cut(s) 279
AclWI GGATC 3 cut(s) 29, 225, 485
AcsI RAATTY 1 cut(s) 85
AfiI CCNNNNNNNGG 1 cut(s) 323
AgsI TTSAA 6 cut(s) 62, 190, 259, 277, 460, 577
AjnI CCWGG 1 cut(s) 563
AloI GAACNNNNNNTCC 2 cut(s) 476, 508
AluBI AGCT 3 cut(s) 223, 473, 551
AluI AGCT 3 cut(s) 223, 473, 551
Alw21I GWGCWC 1 cut(s) 522
Alw26I GTCTC 1 cut(s) 59
AlwI GGATC 3 cut(s) 29, 225, 485
Ama87I CYCGRG 2 cut(s) 224, 546
ApoI RAATTY 1 cut(s) 85
AspA2I CCTAGG 1 cut(s) 317
AspS9I GGNCC 2 cut(s) 173, 501
AsuHPI GGTGA 3 cut(s) 305, 386, 397
AvaI CYCGRG 2 cut(s) 224, 546
AvaII GGWCC 2 cut(s) 173, 501
AvrII CCTAGG 1 cut(s) 317
AxyI CCTNAGG 2 cut(s) 138, 381
BanI GGYRCC 1 cut(s) 353
Bbv12I GWGCWC 1 cut(s) 522
BccI CCATC 2 cut(s) 344, 410
BceAI ACGGC 1 cut(s) 341
BciT130I CCWGG 1 cut(s) 565
BcoDI GTCTC 1 cut(s) 59
BfaI CTAG 2 cut(s) 318, 552
BisI GCNGC 2 cut(s) 123, 126
BlnI CCTAGG 1 cut(s) 317
BlsI GCNGC 2 cut(s) 124, 127
Bme1390I CCNGG 1 cut(s) 565
Bme18I GGWCC 2 cut(s) 173, 501
BmeT110I CYCGRG 2 cut(s) 224, 546
BmgT120I GGNCC 2 cut(s) 173, 501
BmiI GGNNCC 3 cut(s) 135, 355, 502
BmrFI CCNGG 1 cut(s) 565
BpmI CTGGAG 1 cut(s) 453
BpuEI CTTGAG 1 cut(s) 263
Bsa29I ATCGAT 2 cut(s) 8, 180
BsaJI CCNNGG 4 cut(s) 120, 317, 512, 564
BsaWI WCCGGW 1 cut(s) 94
BsaXI ACNNNNNCTCC 4 cut(s) 476, 493, 506, 523
Bsc4I CCNNNNNNNGG 1 cut(s) 323
Bse21I CCTNAGG 2 cut(s) 138, 381
BseBI CCWGG 1 cut(s) 565
BseCI ATCGAT 2 cut(s) 8, 180
BseDI CCNNGG 4 cut(s) 120, 317, 512, 564
BseGI GGATG 1 cut(s) 355
BseLI CCNNNNNNNGG 1 cut(s) 323
BseMII CTCAG 2 cut(s) 129, 395
Bsh1236I CGCG 1 cut(s) 122
Bsh1285I CGRYCG 2 cut(s) 120, 180
BshNI GGYRCC 1 cut(s) 353
BshVI ATCGAT 2 cut(s) 8, 180
BsiEI CGRYCG 2 cut(s) 120, 180
BsiHKAI GWGCWC 1 cut(s) 522
BsiHKCI CYCGRG 2 cut(s) 224, 546
BsiSI CCGG 1 cut(s) 95
BslFI GGGAC 2 cut(s) 514, 581
BslI CCNNNNNNNGG 1 cut(s) 323
BsmAI GTCTC 1 cut(s) 59
BsmFI GGGAC 2 cut(s) 514, 581
BsoBI CYCGRG 2 cut(s) 224, 546
Bsp1286I GDGCHC 1 cut(s) 522
Bsp143I GATC 7 cut(s) 34, 110, 177, 217, 233, 303, 477
Bsp19I CCATGG 1 cut(s) 512
BspACI CCGC 4 cut(s) 120, 122, 125, 204
BspCNI CTCAG 2 cut(s) 130, 394
BspDI ATCGAT 2 cut(s) 8, 180
BspFNI CGCG 1 cut(s) 122
BspLI GGNNCC 3 cut(s) 135, 355, 502
BspPI GGATC 3 cut(s) 29, 225, 485
BspT107I GGYRCC 1 cut(s) 353
BssECI CCNNGG 4 cut(s) 120, 317, 512, 564
BssMI GATC 7 cut(s) 34, 110, 177, 217, 233, 303, 477
BssT1I CCWWGG 2 cut(s) 317, 512
Bst2UI CCWGG 1 cut(s) 565
Bst4CI ACNGT 1 cut(s) 374
Bst6I CTCTTC 1 cut(s) 57
BstC8I GCNNGC 2 cut(s) 522, 526
BstDEI CTNAG 2 cut(s) 138, 381
BstDSI CCRYGG 2 cut(s) 120, 512
BstF5I GGATG 1 cut(s) 355
BstFNI CGCG 1 cut(s) 122
BstKTI GATC 7 cut(s) 37, 113, 180, 220, 236, 306, 480
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 7 cut(s) 34, 110, 177, 217, 233, 303, 477
BstMCI CGRYCG 2 cut(s) 120, 180
BstMWI GCNNNNNNNGC 2 cut(s) 220, 269
BstNI CCWGG 1 cut(s) 565
BstNSI RCATGY 1 cut(s) 528
BstSCI CCNGG 1 cut(s) 563
BstUI CGCG 1 cut(s) 122
BstX2I RGATCY 1 cut(s) 34
BstYI RGATCY 1 cut(s) 34
Bsu15I ATCGAT 2 cut(s) 8, 180
Bsu36I CCTNAGG 2 cut(s) 138, 381
BsuTUI ATCGAT 2 cut(s) 8, 180
BtgI CCRYGG 2 cut(s) 120, 512
BtsCI GGATG 1 cut(s) 355
Cac8I GCNNGC 2 cut(s) 522, 526
Cfr13I GGNCC 2 cut(s) 173, 501
Cfr42I CCGCGG 1 cut(s) 123
ClaI ATCGAT 2 cut(s) 8, 180
CviAII CATG 2 cut(s) 513, 525
CviJI RGCY 5 cut(s) 223, 255, 473, 551, 588
CviKI_1 RGCY 5 cut(s) 223, 255, 473, 551, 588
DdeI CTNAG 2 cut(s) 138, 381
DpnI GATC 7 cut(s) 36, 112, 179, 219, 235, 305, 479
DpnII GATC 7 cut(s) 34, 110, 177, 217, 233, 303, 477
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
Eco130I CCWWGG 2 cut(s) 317, 512
Eco47I GGWCC 2 cut(s) 173, 501
Eco81I CCTNAGG 2 cut(s) 138, 381
Eco88I CYCGRG 2 cut(s) 224, 546
EcoO109I RGGNCCY 1 cut(s) 501
EcoRII CCWGG 1 cut(s) 563
EcoT14I CCWWGG 2 cut(s) 317, 512
EcoT22I ATGCAT 1 cut(s) 530
ErhI CCWWGG 2 cut(s) 317, 512
FaeI CATG 2 cut(s) 516, 528
FaiI YATR 9 cut(s) 159, 210, 252, 345, 514, 526, 530, 536, 585
FaqI GGGAC 2 cut(s) 514, 581
FatI CATG 2 cut(s) 512, 524
Fnu4HI GCNGC 2 cut(s) 123, 126
FokI GGATG 1 cut(s) 362
Fsp4HI GCNGC 2 cut(s) 123, 126
FspBI CTAG 2 cut(s) 318, 552
GluI GCNGC 2 cut(s) 123, 126
GsuI CTGGAG 1 cut(s) 453
HapII CCGG 1 cut(s) 95
Hin1II CATG 2 cut(s) 516, 528
HinfI GANTC 3 cut(s) 148, 386, 411
HpaII CCGG 1 cut(s) 95
HphI GGTGA 3 cut(s) 305, 386, 397
Hpy166II GTNNAC 1 cut(s) 377
Hpy188I TCNGA 4 cut(s) 177, 303, 308, 422
Hpy188III TCNNGA 6 cut(s) 53, 137, 242, 383, 481, 577
Hpy8I GTNNAC 1 cut(s) 377
Hpy99I CGWCG 2 cut(s) 118, 374
HpyAV CCTTC 3 cut(s) 13, 19, 124
HpyCH4III ACNGT 1 cut(s) 374
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 1 cut(s) 528
HpyF10VI GCNNNNNNNGC 2 cut(s) 220, 269
HpyF3I CTNAG 2 cut(s) 138, 381
HpySE526I ACGT 1 cut(s) 279
Hsp92II CATG 2 cut(s) 516, 528
KspI CCGCGG 1 cut(s) 123
Kzo9I GATC 7 cut(s) 34, 110, 177, 217, 233, 303, 477
MaeI CTAG 2 cut(s) 318, 552
MaeII ACGT 1 cut(s) 279
MaeIII GTNAC 1 cut(s) 433
MalI GATC 7 cut(s) 36, 112, 179, 219, 235, 305, 479
MboI GATC 7 cut(s) 34, 110, 177, 217, 233, 303, 477
MboII GAAGA 3 cut(s) 74, 259, 565
MflI RGATCY 1 cut(s) 34
MhlI GDGCHC 1 cut(s) 522
MluCI AATT 2 cut(s) 85, 104
MnlI CCTC 5 cut(s) 133, 220, 390, 477, 519
Mph1103I ATGCAT 1 cut(s) 530
MseI TTAA 1 cut(s) 443
MspA1I CMGCKG 1 cut(s) 122
MspI CCGG 1 cut(s) 95
MspR9I CCNGG 1 cut(s) 565
MvaI CCWGG 1 cut(s) 565
MvnI CGCG 1 cut(s) 122
MwoI GCNNNNNNNGC 2 cut(s) 220, 269
NcoI CCATGG 1 cut(s) 512
NdeII GATC 7 cut(s) 34, 110, 177, 217, 233, 303, 477
NlaIII CATG 2 cut(s) 516, 528
NlaIV GGNNCC 3 cut(s) 135, 355, 502
NmeAIII GCCGAG 1 cut(s) 180
NsiI ATGCAT 1 cut(s) 530
NspI RCATGY 1 cut(s) 528
PaeI GCATGC 1 cut(s) 528
PaeR7I CTCGAG 2 cut(s) 224, 546
PcsI WCGNNNNNNNCGW 1 cut(s) 276
PfeI GAWTC 3 cut(s) 148, 386, 411
PkrI GCNGC 2 cut(s) 124, 127
Ple19I CGATCG 1 cut(s) 180
PpuMI RGGWCCY 1 cut(s) 501
Psp1406I AACGTT 1 cut(s) 279
Psp5II RGGWCCY 1 cut(s) 501
Psp6I CCWGG 1 cut(s) 563
PspGI CCWGG 1 cut(s) 563
PspN4I GGNNCC 3 cut(s) 135, 355, 502
PspPI GGNCC 2 cut(s) 173, 501
PspPPI RGGWCCY 1 cut(s) 501
PspXI VCTCGAGB 2 cut(s) 224, 546
PsuI RGATCY 1 cut(s) 34
PvuI CGATCG 1 cut(s) 180
SacII CCGCGG 1 cut(s) 123
SaqAI TTAA 1 cut(s) 443
SatI GCNGC 2 cut(s) 123, 126
Sau3AI GATC 7 cut(s) 34, 110, 177, 217, 233, 303, 477
Sau96I GGNCC 2 cut(s) 173, 501
ScrFI CCNGG 1 cut(s) 565
SduI GDGCHC 1 cut(s) 522
Sfr274I CTCGAG 2 cut(s) 224, 546
Sfr303I CCGCGG 1 cut(s) 123
SgrBI CCGCGG 1 cut(s) 123
SinI GGWCC 2 cut(s) 173, 501
SlaI CTCGAG 2 cut(s) 224, 546
SmlI CTYRAG 3 cut(s) 224, 242, 546
SmoI CTYRAG 3 cut(s) 224, 242, 546
SphI GCATGC 1 cut(s) 528
Sse9I AATT 2 cut(s) 85, 104
SsiI CCGC 4 cut(s) 120, 122, 125, 204
SspMI CTAG 2 cut(s) 318, 552
StyD4I CCNGG 1 cut(s) 563
StyI CCWWGG 2 cut(s) 317, 512
TaaI ACNGT 1 cut(s) 374
TaiI ACGT 1 cut(s) 282
TaqI TCGA 8 cut(s) 8, 81, 113, 180, 225, 232, 369, 547
TaqII GACCGA 1 cut(s) 318
TasI AATT 2 cut(s) 85, 104
TauI GCSGC 2 cut(s) 125, 128
TfiI GAWTC 3 cut(s) 148, 386, 411
Tru1I TTAA 1 cut(s) 443
Tru9I TTAA 1 cut(s) 443
TspDTI ATGAA 1 cut(s) 140
TspGWI ACGGA 2 cut(s) 29, 63
VpaK11BI GGWCC 2 cut(s) 173, 501
XapI RAATTY 1 cut(s) 85
XceI RCATGY 1 cut(s) 528
XhoI CTCGAG 2 cut(s) 224, 546
XmaJI CCTAGG 1 cut(s) 317
XspI CTAG 2 cut(s) 318, 552
Zsp2I ATGCAT 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.