FvH4_2g12791

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0014414
Physical Location & Seq
Forward (+)
11238794 .. 11240766
1973 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g12791.t1

Sequence Viewer

Length: 549 bp
ATGGACGAGGATAACAAAATGGGCGAAATCGAGGAGATGGGTCCAAACTCAAGCCCGGATTCGCACCCGAGAGTGAAGACGAAGGTTCCAGAAGTAGAGGTCAGGCTGTACCGTCAAGGCAAAGGTCCGATCGACTCGTTCAAGTCAAGCCTGGGAGGTTGGGACCAGAACCAGTTGGAGGTTCGAGACATTCTCGACAAGTACGGCCTCAAATCGCTCTACGCTTTCAATCCCCAGTCGGGTCGCGGCGTCCCCATCCGCTTTAACCCCCGCAATGGCCGCTCTATGCTCCCTTATCGAGATGGATCCGAGGTTCACATCGACGGCGAGCCCAAGGATTCCTTGCTCCAACCAGTGACAAAGATTTTGCTTGGGGTAGCAGTTATGACTATCCTGATAACCATTGTTATGAAGGACCCTCCAGAATTTGTCCAAAAGTTTAATTCTTTTGGCGGAAACTTTCCTCCTTGGATCCTTGCTCTTGTGGTAATAGTTTTTACACGAATGAGGAAGAGAACCAGGGATTTTATGAAAAAACTTGGTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

183

Amino Acids

20.72

Weight (kDa)

9.45

Isoelectric Point (pI)

46.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014414)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71780
fragaria_vesca FvH4_2g12791
malus_domestica MD05G1036200.v1.1 MD10G1038300.v1.1
prunus_persica Prupe.8G044500_v2.0.a1 Prupe.8G044500_v2.0.a1
pyrus_communis pycom10g02630
rosa_chinensis RchiOBHm_Chr6g0273681
rosa_laevigata RLG00000013600
rosa_multiflora Rmu_sc0021426.1_g000002
rosa_roxburghii Rroxscaffold_7G00195130
rosa_rugosa Rorug06G0077200
rosa_samantha Rh6AG191500 Rh6BG195600 Rh6CG195100 Rh6DG186900
rosa_wichuraiana Rw6G016760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 282
AccII CGCG 1 cut(s) 246
AciI CCGC 5 cut(s) 246, 259, 271, 280, 453
AclWI GGATC 4 cut(s) 300, 313, 466, 479
AcoI YGGCCR 1 cut(s) 277
AcsI RAATTY 1 cut(s) 425
AcyI GRCGYC 1 cut(s) 249
AfaI GTAC 2 cut(s) 110, 203
AfiI CCNNNNNNNGG 3 cut(s) 178, 239, 275
AgsI TTSAA 2 cut(s) 142, 229
AjnI CCWGG 2 cut(s) 150, 518
AloI GAACNNNNNNTCC 2 cut(s) 297, 329
Alw26I GTCTC 1 cut(s) 180
AlwI GGATC 4 cut(s) 300, 313, 466, 479
Ama87I CYCGRG 1 cut(s) 67
AoxI GGCC 2 cut(s) 205, 277
ApoI RAATTY 1 cut(s) 425
ArsI GACNNNNNNTTYG 2 cut(s) 349, 381
AspS9I GGNCC 4 cut(s) 41, 125, 163, 415
AsuC2I CCSGG 1 cut(s) 56
AvaI CYCGRG 1 cut(s) 67
AvaII GGWCC 4 cut(s) 41, 125, 163, 415
BamHI GGATCC 2 cut(s) 305, 471
BanII GRGCYC 1 cut(s) 333
BbsI GAAGAC 1 cut(s) 83
BccI CCATC 3 cut(s) 31, 263, 296
BceAI ACGGC 2 cut(s) 220, 340
BciT130I CCWGG 2 cut(s) 152, 520
BcnI CCSGG 1 cut(s) 56
BcoDI GTCTC 1 cut(s) 180
BisI GCNGC 2 cut(s) 247, 280
BlsI GCNGC 2 cut(s) 248, 281
Bme1390I CCNGG 3 cut(s) 56, 152, 520
Bme18I GGWCC 4 cut(s) 41, 125, 163, 415
BmeT110I CYCGRG 1 cut(s) 67
BmgT120I GGNCC 4 cut(s) 41, 125, 163, 415
BmiI GGNNCC 6 cut(s) 42, 87, 164, 307, 417, 473
BmrFI CCNGG 3 cut(s) 56, 152, 520
BmrI ACTGGG 1 cut(s) 229
BmuI ACTGGG 1 cut(s) 229
BpiI GAAGAC 1 cut(s) 83
BplI GAGNNNNNCTC 2 cut(s) 177, 209
BpmI CTGGAG 1 cut(s) 405
BpuEI CTTGAG 1 cut(s) 34
BpuMI CCSGG 1 cut(s) 56
BsaHI GRCGYC 1 cut(s) 249
BsaJI CCNNGG 5 cut(s) 151, 309, 333, 467, 519
Bsc4I CCNNNNNNNGG 3 cut(s) 178, 239, 275
Bse1I ACTGG 3 cut(s) 172, 235, 353
Bse3DI GCAATG 1 cut(s) 280
BseBI CCWGG 2 cut(s) 152, 520
BseDI CCNNGG 5 cut(s) 151, 309, 333, 467, 519
BseGI GGATG 1 cut(s) 255
BseLI CCNNNNNNNGG 3 cut(s) 178, 239, 275
BseMI GCAATG 1 cut(s) 280
BseNI ACTGG 3 cut(s) 172, 235, 353
BseRI GAGGAG 1 cut(s) 47
Bsh1236I CGCG 1 cut(s) 246
Bsh1285I CGRYCG 1 cut(s) 132
BshFI GGCC 2 cut(s) 207, 279
BsiEI CGRYCG 1 cut(s) 132
BsiHKCI CYCGRG 1 cut(s) 67
BsiSI CCGG 1 cut(s) 56
BslFI GGGAC 2 cut(s) 176, 236
BslI CCNNNNNNNGG 3 cut(s) 178, 239, 275
BsmAI GTCTC 1 cut(s) 180
BsmFI GGGAC 2 cut(s) 176, 236
BsnI GGCC 2 cut(s) 207, 279
BsoBI CYCGRG 1 cut(s) 67
Bsp1286I GDGCHC 1 cut(s) 333
Bsp143I GATC 3 cut(s) 129, 305, 471
BspACI CCGC 5 cut(s) 246, 259, 271, 280, 453
BspANI GGCC 2 cut(s) 207, 279
BspFNI CGCG 1 cut(s) 246
BspLI GGNNCC 6 cut(s) 42, 87, 164, 307, 417, 473
BspPI GGATC 4 cut(s) 300, 313, 466, 479
BsrBI CCGCTC 1 cut(s) 282
BsrDI GCAATG 1 cut(s) 280
BsrI ACTGG 3 cut(s) 172, 235, 353
BssECI CCNNGG 5 cut(s) 151, 309, 333, 467, 519
BssMI GATC 3 cut(s) 129, 305, 471
BssNI GRCGYC 1 cut(s) 249
BssT1I CCWWGG 2 cut(s) 333, 467
Bst2UI CCWGG 2 cut(s) 152, 520
Bst4CI ACNGT 1 cut(s) 113
Bst6I CTCTTC 1 cut(s) 506
BstACI GRCGYC 1 cut(s) 249
BstC8I GCNNGC 1 cut(s) 329
BstF5I GGATG 1 cut(s) 255
BstFNI CGCG 1 cut(s) 246
BstKTI GATC 3 cut(s) 132, 308, 474
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 3 cut(s) 129, 305, 471
BstMCI CGRYCG 1 cut(s) 132
BstMWI GCNNNNNNNGC 1 cut(s) 279
BstNI CCWGG 2 cut(s) 152, 520
BstSCI CCNGG 3 cut(s) 54, 150, 518
BstUI CGCG 1 cut(s) 246
BstV2I GAAGAC 1 cut(s) 83
BstX2I RGATCY 2 cut(s) 305, 471
BstYI RGATCY 2 cut(s) 305, 471
BsuRI GGCC 2 cut(s) 207, 279
BtsCI GGATG 1 cut(s) 255
BtsIMutI CAGTG 1 cut(s) 360
Cac8I GCNNGC 1 cut(s) 329
Cfr13I GGNCC 4 cut(s) 41, 125, 163, 415
CseI GACGC 1 cut(s) 238
Csp6I GTAC 2 cut(s) 109, 202
CviJI RGCY 6 cut(s) 54, 106, 150, 207, 279, 331
CviKI_1 RGCY 6 cut(s) 54, 106, 150, 207, 279, 331
CviQI GTAC 2 cut(s) 109, 202
DpnI GATC 3 cut(s) 131, 307, 473
DpnII GATC 3 cut(s) 129, 305, 471
EaeI YGGCCR 1 cut(s) 277
Eam1104I CTCTTC 1 cut(s) 506
EarI CTCTTC 1 cut(s) 506
EciI GGCGGA 1 cut(s) 468
Eco130I CCWWGG 2 cut(s) 333, 467
Eco24I GRGCYC 1 cut(s) 333
Eco47I GGWCC 4 cut(s) 41, 125, 163, 415
Eco88I CYCGRG 1 cut(s) 67
EcoO109I RGGNCCY 1 cut(s) 415
EcoRII CCWGG 2 cut(s) 150, 518
EcoT14I CCWWGG 2 cut(s) 333, 467
EcoT38I GRGCYC 1 cut(s) 333
ErhI CCWWGG 2 cut(s) 333, 467
FaiI YATR 4 cut(s) 287, 386, 410, 530
FalI AAGNNNNNCTT 2 cut(s) 326, 358
FaqI GGGAC 2 cut(s) 176, 236
FauI CCCGC 1 cut(s) 278
Fnu4HI GCNGC 2 cut(s) 247, 280
FokI GGATG 1 cut(s) 242
FriOI GRGCYC 1 cut(s) 333
Fsp4HI GCNGC 2 cut(s) 247, 280
GluI GCNGC 2 cut(s) 247, 280
GsuI CTGGAG 1 cut(s) 405
HaeIII GGCC 2 cut(s) 207, 279
HapII CCGG 1 cut(s) 56
HgaI GACGC 1 cut(s) 238
Hin1I GRCGYC 1 cut(s) 249
HinfI GANTC 3 cut(s) 59, 134, 338
HpaII CCGG 1 cut(s) 56
Hpy166II GTNNAC 1 cut(s) 316
Hpy188I TCNGA 2 cut(s) 129, 310
Hpy188III TCNNGA 6 cut(s) 89, 185, 194, 299, 394, 422
Hpy8I GTNNAC 1 cut(s) 316
Hpy99I CGWCG 1 cut(s) 326
HpyAV CCTTC 2 cut(s) 76, 406
HpyCH4III ACNGT 1 cut(s) 113
HpyF10VI GCNNNNNNNGC 1 cut(s) 279
Hsp92I GRCGYC 1 cut(s) 249
Kzo9I GATC 3 cut(s) 129, 305, 471
LmnI GCTCC 2 cut(s) 294, 351
MaeIII GTNAC 1 cut(s) 355
MalI GATC 3 cut(s) 131, 307, 473
MbiI CCGCTC 1 cut(s) 282
MboI GATC 3 cut(s) 129, 305, 471
MboII GAAGA 2 cut(s) 88, 523
MflI RGATCY 2 cut(s) 305, 471
MhlI GDGCHC 1 cut(s) 333
MluCI AATT 2 cut(s) 425, 442
MlyI GAGTC 1 cut(s) 128
MmeI TCCRAC 2 cut(s) 156, 373
MnlI CCTC 9 cut(s) 25, 91, 149, 172, 218, 304, 429, 474, 501
MseI TTAA 2 cut(s) 264, 441
MslI CAYNNNNRTG 1 cut(s) 407
MspI CCGG 1 cut(s) 56
MspR9I CCNGG 3 cut(s) 56, 152, 520
MvaI CCWGG 2 cut(s) 152, 520
MvnI CGCG 1 cut(s) 246
MwoI GCNNNNNNNGC 1 cut(s) 279
NciI CCSGG 1 cut(s) 56
NdeII GATC 3 cut(s) 129, 305, 471
NlaIV GGNNCC 6 cut(s) 42, 87, 164, 307, 417, 473
NmuCI GTSAC 1 cut(s) 355
PfeI GAWTC 2 cut(s) 59, 338
PkrI GCNGC 2 cut(s) 248, 281
Ple19I CGATCG 1 cut(s) 132
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
PpuMI RGGWCCY 1 cut(s) 415
Psp5II RGGWCCY 1 cut(s) 415
Psp6I CCWGG 2 cut(s) 150, 518
PspGI CCWGG 2 cut(s) 150, 518
PspN4I GGNNCC 6 cut(s) 42, 87, 164, 307, 417, 473
PspPI GGNCC 4 cut(s) 41, 125, 163, 415
PspPPI RGGWCCY 1 cut(s) 415
PsuI RGATCY 2 cut(s) 305, 471
PvuI CGATCG 1 cut(s) 132
RsaI GTAC 2 cut(s) 110, 203
RsaNI GTAC 2 cut(s) 109, 202
RseI CAYNNNNRTG 1 cut(s) 407
SaqAI TTAA 2 cut(s) 264, 441
SatI GCNGC 2 cut(s) 247, 280
Sau3AI GATC 3 cut(s) 129, 305, 471
Sau96I GGNCC 4 cut(s) 41, 125, 163, 415
SchI GAGTC 1 cut(s) 128
ScrFI CCNGG 3 cut(s) 56, 152, 520
SduI GDGCHC 1 cut(s) 333
SetI ASST 6 cut(s) 87, 102, 127, 160, 183, 315
SinI GGWCC 4 cut(s) 41, 125, 163, 415
SmiMI CAYNNNNRTG 1 cut(s) 407
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
Sse9I AATT 2 cut(s) 425, 442
SsiI CCGC 5 cut(s) 246, 259, 271, 280, 453
StyD4I CCNGG 3 cut(s) 54, 150, 518
StyI CCWWGG 2 cut(s) 333, 467
TaaI ACNGT 1 cut(s) 113
TaqI TCGA 6 cut(s) 30, 132, 184, 195, 298, 321
TasI AATT 2 cut(s) 425, 442
TauI GCSGC 2 cut(s) 249, 282
TfiI GAWTC 2 cut(s) 59, 338
Tru1I TTAA 2 cut(s) 264, 441
Tru9I TTAA 2 cut(s) 264, 441
TscAI CASTG 1 cut(s) 360
TseFI GTSAC 1 cut(s) 355
Tsp45I GTSAC 1 cut(s) 355
TspDTI ATGAA 2 cut(s) 425, 545
TspRI CASTG 1 cut(s) 360
VpaK11BI GGWCC 4 cut(s) 41, 125, 163, 415
XapI RAATTY 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.